Ggra2017.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2017.t1
Unique NameGgra2017.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length206
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000226_piloncontigtig00000226_pilon:9173..9790 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2017Ggra2017Gracilaria gracilis GNS1m malegenetig00000226_pilon 9173..9790 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2017.t1.start1Ggra2017.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000226_pilon 9173..9175 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2017.t1.CDS1Ggra2017.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000226_pilon 9173..9790 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2017.t1.exon1Ggra2017.t1.exon1Gracilaria gracilis GNS1m maleexontig00000226_pilon 9173..9790 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2017.t1.stop1Ggra2017.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000226_pilon 9788..9790 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2017.t1Ggra2017.t1Gracilaria gracilis GNS1m malepolypeptidetig00000226_pilon 9173..9790 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2017.t1 ID=Ggra2017.t1|Name=Ggra2017.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=206bp
MPNNTVHRDLIQKSNLSPSRASRTNTDTQHYDNDTVVVLFEMMKKAGYRD
RRAQKKSLKDLFAEAVKLAAQGRGIKRTAKGWQKKFTINKEEYSVFVTKL
KACGRDGEDEDLYKRPEFFQQIHELENGKARYDPPAQYSTDDGTTCPDLP
DSSTRKRIKLSKEALLSEFIKKQEATNASLISELKKCNEERQKTRSVLER
LVEKF*
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spliced messenger RNA

>Ggra2017.t1 ID=Ggra2017.t1|Name=Ggra2017.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=618bp|location=Sequence derived from alignment at tig00000226_pilon:9173..9790+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCAAACAACACTGTACACAGAGACCTCATACAGAAATCTAATCTCTC
GCCCTCTCGTGCTAGCAGAACCAATACTGACACGCAGCATTACGACAATG
ACACGGTTGTAGTACTGTTCGAGATGATGAAGAAGGCCGGCTATAGAGAC
CGAAGAGCGCAAAAGAAGAGCCTCAAGGATTTATTCGCAGAGGCTGTCAA
ACTGGCTGCTCAGGGGCGCGGAATTAAAAGAACAGCCAAAGGTTGGCAGA
AAAAGTTTACCATAAATAAGGAGGAATACTCCGTCTTTGTCACAAAGCTG
AAGGCATGTGGGAGAGACGGCGAGGATGAAGATCTTTATAAAAGACCAGA
GTTCTTCCAACAGATACATGAACTCGAAAATGGAAAGGCCCGATACGATC
CTCCAGCGCAGTACTCCACAGACGATGGCACAACATGCCCGGACCTTCCC
GATTCAAGCACGCGAAAACGCATTAAGCTGTCGAAGGAAGCCCTGCTTTC
AGAGTTCATCAAAAAACAGGAGGCGACAAATGCGTCCTTGATATCTGAGT
TAAAGAAGTGCAACGAAGAGCGACAAAAAACCCGTTCTGTACTTGAACGC
CTTGTCGAAAAGTTCTAA
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protein sequence of Ggra2017.t1

>Ggra2017.t1 ID=Ggra2017.t1|Name=Ggra2017.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=206bp
MPNNTVHRDLIQKSNLSPSRASRTNTDTQHYDNDTVVVLFEMMKKAGYRD
RRAQKKSLKDLFAEAVKLAAQGRGIKRTAKGWQKKFTINKEEYSVFVTKL
KACGRDGEDEDLYKRPEFFQQIHELENGKARYDPPAQYSTDDGTTCPDLP
DSSTRKRIKLSKEALLSEFIKKQEATNASLISELKKCNEERQKTRSVLER
LVEKF*
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mRNA from alignment at tig00000226_pilon:9173..9790+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2017.t1 ID=Ggra2017.t1|Name=Ggra2017.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=618bp|location=Sequence derived from alignment at tig00000226_pilon:9173..9790+ (Gracilaria gracilis GNS1m male)
ATGCCAAACAACACTGTACACAGAGACCTCATACAGAAATCTAATCTCTC
GCCCTCTCGTGCTAGCAGAACCAATACTGACACGCAGCATTACGACAATG
ACACGGTTGTAGTACTGTTCGAGATGATGAAGAAGGCCGGCTATAGAGAC
CGAAGAGCGCAAAAGAAGAGCCTCAAGGATTTATTCGCAGAGGCTGTCAA
ACTGGCTGCTCAGGGGCGCGGAATTAAAAGAACAGCCAAAGGTTGGCAGA
AAAAGTTTACCATAAATAAGGAGGAATACTCCGTCTTTGTCACAAAGCTG
AAGGCATGTGGGAGAGACGGCGAGGATGAAGATCTTTATAAAAGACCAGA
GTTCTTCCAACAGATACATGAACTCGAAAATGGAAAGGCCCGATACGATC
CTCCAGCGCAGTACTCCACAGACGATGGCACAACATGCCCGGACCTTCCC
GATTCAAGCACGCGAAAACGCATTAAGCTGTCGAAGGAAGCCCTGCTTTC
AGAGTTCATCAAAAAACAGGAGGCGACAAATGCGTCCTTGATATCTGAGT
TAAAGAAGTGCAACGAAGAGCGACAAAAAACCCGTTCTGTACTTGAACGC
CTTGTCGAAAAGTTCTAA
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Coding sequence (CDS) from alignment at tig00000226_pilon:9173..9790+

>Ggra2017.t1 ID=Ggra2017.t1|Name=Ggra2017.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=618bp|location=Sequence derived from alignment at tig00000226_pilon:9173..9790+ (Gracilaria gracilis GNS1m male)
ATGCCAAACAACACTGTACACAGAGACCTCATACAGAAATCTAATCTCTC
GCCCTCTCGTGCTAGCAGAACCAATACTGACACGCAGCATTACGACAATG
ACACGGTTGTAGTACTGTTCGAGATGATGAAGAAGGCCGGCTATAGAGAC
CGAAGAGCGCAAAAGAAGAGCCTCAAGGATTTATTCGCAGAGGCTGTCAA
ACTGGCTGCTCAGGGGCGCGGAATTAAAAGAACAGCCAAAGGTTGGCAGA
AAAAGTTTACCATAAATAAGGAGGAATACTCCGTCTTTGTCACAAAGCTG
AAGGCATGTGGGAGAGACGGCGAGGATGAAGATCTTTATAAAAGACCAGA
GTTCTTCCAACAGATACATGAACTCGAAAATGGAAAGGCCCGATACGATC
CTCCAGCGCAGTACTCCACAGACGATGGCACAACATGCCCGGACCTTCCC
GATTCAAGCACGCGAAAACGCATTAAGCTGTCGAAGGAAGCCCTGCTTTC
AGAGTTCATCAAAAAACAGGAGGCGACAAATGCGTCCTTGATATCTGAGT
TAAAGAAGTGCAACGAAGAGCGACAAAAAACCCGTTCTGTACTTGAACGC
CTTGTCGAAAAGTTCTAA
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