Ggra2014.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2014.t1
Unique NameGgra2014.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length276
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000925_piloncontigtig00000925_pilon:146369..147196 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2014Ggra2014Gracilaria gracilis GNS1m malegenetig00000925_pilon 146369..147196 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2014.t1.start1Ggra2014.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000925_pilon 146369..146371 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2014.t1.CDS1Ggra2014.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000925_pilon 146369..147196 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2014.t1.exon1Ggra2014.t1.exon1Gracilaria gracilis GNS1m maleexontig00000925_pilon 146369..147196 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2014.t1.stop1Ggra2014.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000925_pilon 147194..147196 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2014.t1Ggra2014.t1Gracilaria gracilis GNS1m malepolypeptidetig00000925_pilon 146369..147196 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2014.t1 ID=Ggra2014.t1|Name=Ggra2014.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=276bp
MQNSLRNTSHKLANFEETFAAFTPRNTDGNRAKTLLFNASSGDSTEAIPN
EDVEDSSLAGMLERLTPTSPYQNSVLSKPETRTCILVDEIDEECVSMKNI
PRGFTRGRSGTGVPEPIGGEQGHRARTRSISRFRGYGKEEEDKIIRRARA
RSASRGIRHSWNLMTNQEYSELSSTELAKRICPESFNIFRRVGPSDGEDG
AHNVNKEDAMEGMNTAGKETNWKVTGRKSKDDSDLKFVSETRRVESFNLN
ETESPEEQSDSNEFGMQCKSNSVIS*
back to top

spliced messenger RNA

>Ggra2014.t1 ID=Ggra2014.t1|Name=Ggra2014.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=828bp|location=Sequence derived from alignment at tig00000925_pilon:146369..147196+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAAACAGCCTGCGTAACACCAGCCATAAACTGGCCAACTTCGAAGA
GACGTTCGCGGCGTTCACCCCTCGCAACACAGATGGAAATCGAGCTAAAA
CGCTTCTTTTTAATGCTTCGTCCGGAGACTCGACCGAGGCTATCCCGAAC
GAAGATGTCGAAGATAGTTCACTCGCTGGAATGCTTGAAAGATTGACCCC
TACTTCACCTTATCAAAACTCAGTTTTGAGCAAGCCAGAAACAAGGACAT
GCATTTTGGTGGATGAAATTGACGAAGAATGCGTGTCTATGAAGAATATA
CCAAGAGGTTTTACTCGTGGCCGTTCGGGTACTGGTGTTCCTGAACCAAT
TGGTGGTGAGCAGGGCCATAGAGCGCGAACGAGATCCATTTCTCGTTTCC
GTGGATACGGAAAGGAAGAAGAGGACAAAATCATTCGAAGAGCTCGAGCG
AGGTCGGCTTCAAGGGGAATTCGGCATTCATGGAATTTGATGACCAACCA
AGAGTACTCCGAGTTGTCGAGCACAGAGTTAGCGAAGAGGATCTGCCCCG
AAAGTTTTAATATCTTCCGTCGTGTAGGACCAAGCGACGGAGAGGATGGC
GCTCACAACGTGAACAAAGAAGACGCAATGGAGGGTATGAACACCGCTGG
TAAGGAGACGAACTGGAAAGTTACGGGGCGTAAGTCTAAGGATGACTCTG
ACCTCAAGTTTGTAAGTGAAACACGAAGAGTCGAGAGCTTTAATCTTAAT
GAGACTGAGAGTCCTGAGGAACAAAGCGATTCAAACGAGTTTGGGATGCA
ATGTAAGTCAAATAGTGTTATTTCGTGA
back to top

protein sequence of Ggra2014.t1

>Ggra2014.t1 ID=Ggra2014.t1|Name=Ggra2014.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=276bp
MQNSLRNTSHKLANFEETFAAFTPRNTDGNRAKTLLFNASSGDSTEAIPN
EDVEDSSLAGMLERLTPTSPYQNSVLSKPETRTCILVDEIDEECVSMKNI
PRGFTRGRSGTGVPEPIGGEQGHRARTRSISRFRGYGKEEEDKIIRRARA
RSASRGIRHSWNLMTNQEYSELSSTELAKRICPESFNIFRRVGPSDGEDG
AHNVNKEDAMEGMNTAGKETNWKVTGRKSKDDSDLKFVSETRRVESFNLN
ETESPEEQSDSNEFGMQCKSNSVIS*
back to top

mRNA from alignment at tig00000925_pilon:146369..147196+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2014.t1 ID=Ggra2014.t1|Name=Ggra2014.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=828bp|location=Sequence derived from alignment at tig00000925_pilon:146369..147196+ (Gracilaria gracilis GNS1m male)
ATGCAAAACAGCCTGCGTAACACCAGCCATAAACTGGCCAACTTCGAAGA
GACGTTCGCGGCGTTCACCCCTCGCAACACAGATGGAAATCGAGCTAAAA
CGCTTCTTTTTAATGCTTCGTCCGGAGACTCGACCGAGGCTATCCCGAAC
GAAGATGTCGAAGATAGTTCACTCGCTGGAATGCTTGAAAGATTGACCCC
TACTTCACCTTATCAAAACTCAGTTTTGAGCAAGCCAGAAACAAGGACAT
GCATTTTGGTGGATGAAATTGACGAAGAATGCGTGTCTATGAAGAATATA
CCAAGAGGTTTTACTCGTGGCCGTTCGGGTACTGGTGTTCCTGAACCAAT
TGGTGGTGAGCAGGGCCATAGAGCGCGAACGAGATCCATTTCTCGTTTCC
GTGGATACGGAAAGGAAGAAGAGGACAAAATCATTCGAAGAGCTCGAGCG
AGGTCGGCTTCAAGGGGAATTCGGCATTCATGGAATTTGATGACCAACCA
AGAGTACTCCGAGTTGTCGAGCACAGAGTTAGCGAAGAGGATCTGCCCCG
AAAGTTTTAATATCTTCCGTCGTGTAGGACCAAGCGACGGAGAGGATGGC
GCTCACAACGTGAACAAAGAAGACGCAATGGAGGGTATGAACACCGCTGG
TAAGGAGACGAACTGGAAAGTTACGGGGCGTAAGTCTAAGGATGACTCTG
ACCTCAAGTTTGTAAGTGAAACACGAAGAGTCGAGAGCTTTAATCTTAAT
GAGACTGAGAGTCCTGAGGAACAAAGCGATTCAAACGAGTTTGGGATGCA
ATGTAAGTCAAATAGTGTTATTTCGTGA
back to top

Coding sequence (CDS) from alignment at tig00000925_pilon:146369..147196+

>Ggra2014.t1 ID=Ggra2014.t1|Name=Ggra2014.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=828bp|location=Sequence derived from alignment at tig00000925_pilon:146369..147196+ (Gracilaria gracilis GNS1m male)
ATGCAAAACAGCCTGCGTAACACCAGCCATAAACTGGCCAACTTCGAAGA
GACGTTCGCGGCGTTCACCCCTCGCAACACAGATGGAAATCGAGCTAAAA
CGCTTCTTTTTAATGCTTCGTCCGGAGACTCGACCGAGGCTATCCCGAAC
GAAGATGTCGAAGATAGTTCACTCGCTGGAATGCTTGAAAGATTGACCCC
TACTTCACCTTATCAAAACTCAGTTTTGAGCAAGCCAGAAACAAGGACAT
GCATTTTGGTGGATGAAATTGACGAAGAATGCGTGTCTATGAAGAATATA
CCAAGAGGTTTTACTCGTGGCCGTTCGGGTACTGGTGTTCCTGAACCAAT
TGGTGGTGAGCAGGGCCATAGAGCGCGAACGAGATCCATTTCTCGTTTCC
GTGGATACGGAAAGGAAGAAGAGGACAAAATCATTCGAAGAGCTCGAGCG
AGGTCGGCTTCAAGGGGAATTCGGCATTCATGGAATTTGATGACCAACCA
AGAGTACTCCGAGTTGTCGAGCACAGAGTTAGCGAAGAGGATCTGCCCCG
AAAGTTTTAATATCTTCCGTCGTGTAGGACCAAGCGACGGAGAGGATGGC
GCTCACAACGTGAACAAAGAAGACGCAATGGAGGGTATGAACACCGCTGG
TAAGGAGACGAACTGGAAAGTTACGGGGCGTAAGTCTAAGGATGACTCTG
ACCTCAAGTTTGTAAGTGAAACACGAAGAGTCGAGAGCTTTAATCTTAAT
GAGACTGAGAGTCCTGAGGAACAAAGCGATTCAAACGAGTTTGGGATGCA
ATGTAAGTCAAATAGTGTTATTTCGTGA
back to top