Ggra2012.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2012.t1
Unique NameGgra2012.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length402
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000925_piloncontigtig00000925_pilon:140862..142067 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2012Ggra2012Gracilaria gracilis GNS1m malegenetig00000925_pilon 140862..142067 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2012.t1.start1Ggra2012.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000925_pilon 140862..140864 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2012.t1.CDS1Ggra2012.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000925_pilon 140862..142067 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2012.t1.exon1Ggra2012.t1.exon1Gracilaria gracilis GNS1m maleexontig00000925_pilon 140862..142067 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2012.t1.stop1Ggra2012.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000925_pilon 142065..142067 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2012.t1Ggra2012.t1Gracilaria gracilis GNS1m malepolypeptidetig00000925_pilon 140862..142067 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2012.t1 ID=Ggra2012.t1|Name=Ggra2012.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=402bp
MGEPQDDRPFVAANLYRTDVFHTALYDAPPPLPPPLTPSPSCSQPPPAPP
PPQPPPLPPSQPLAAPPQPLAAPRVDAVAGRERLSPLSEAVCAAEGSRAR
SAAATASVGARVSKRRRFRFKEQHDVAMLQTVLHTRAHVAPHGQALRLFE
DATALLFERGALADVTDGPLPTAKTVWDRFRHLVHTHRGRALGASAGRGQ
LFRERAALLDAIVSDVDREREQREEHQQRLQQQHFVIRQQCVQGALLSPS
ASGSASAKRAAIGLSGRVVRRKIMAHGALSTSEQVVSGVDGAEALNESNE
DVHAASSGAEGAALTQEALCESRGDVERLRLELELRRMEADEKERRRRFE
IEQRFVNIEERRTAVEVRRLQMEEDERKNARQERQLLTSLLTTLANGLLN
K*
back to top

spliced messenger RNA

>Ggra2012.t1 ID=Ggra2012.t1|Name=Ggra2012.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1206bp|location=Sequence derived from alignment at tig00000925_pilon:140862..142067+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGAACCGCAAGACGATCGCCCGTTCGTCGCCGCAAACCTGTACCG
CACCGACGTCTTCCACACCGCGCTGTACGACGcgccgccgccgctgccgc
cgccgctcaccccgtccccgtcctgctcgcagccgccgcccgccccgccg
ccgccgcagccgccgccgctgccgccctcgcagccgctcgccgcgccgcc
gcagccgctcgccgcgccgcgtgtcgacgccgtcgccggccgcgagcggc
tgtcgccgcTGAGCGAGGCCGTGTGCGCGGCGGAGGGGTCGCGCGCGCGC
TCGGCAGCGGCGACGGCGTCCGTGGGCGCGCGCGTGTCGAAGAGACGGCG
CTTCCGCTTCAAGGAGCAGCACGACGTGGCCATGTTACAGACGGTGCTTC
ACACGCGCGCGCACGTGGCGCCGCACGGGCAGGCACTGCGGCTGTTCGAA
GACGCCACGGCGCTTTTGTTCGAACGCGGCGCGCTGGCAGACGTGACGGA
CGGCCCGTTGCCCACGGCAAAGACCGTGTGGGATCGGTTCCGACACCTGG
TGCACACGCACCGCGGGCGTGCGCTGGGCGCCAGCGCCGGCAGGGGGCAG
CTGTTCAGGGAGCGAGCCGCGCTTTTGGACGCCATTGTGAGCGACGTGGA
TCGTGAGCGCGAGCAGAGGGAGGAGCATCAACAACGGCTGCAACAGCAGC
ACTTTGTGATTCGGCAGCAGTGCGTGCAGGGCGCGCTGCTGTCGCCGTCG
GCCAGCGGCTCGGCCTCGGCGAAGCGCGCCGCGATTGGGTTGAGTGGGCG
CGTGGTGAGGAGGAAGATAATGGCGCACGGTGCGCTGTCGACGTCGGAGC
AGGTGGTGTCGGGCGTGGACGGCGCGGAGGCGCTCAACGAGAGTAACGAG
GATGTGCACGCCGCGAGCAGCGGCGCGGAGGGCGCGGCGCTCACGCAGGA
GGCGCTGTGTGAGTCGCGCGGCGACGTGGAACGGCTGAGACTGGAGCTGG
AGCTGCGGCGCATGGAGGCGGATGAGAAGGAACGGCGACGACGCTTCGAG
ATCGAGCAGCGCTTCGTGAACATCGAGGAGCGCCGCACGGCCGTGGAGGT
GCGCCGCTTGCAGATGGAGGAGGATGAACGGAAGAACGCGCGGCAGGAGC
GCCAATTGTTGACGTCGCTGCTGACCACGCTGGCTAACGGACTGCTCAAC
AAGTGA
back to top

protein sequence of Ggra2012.t1

>Ggra2012.t1 ID=Ggra2012.t1|Name=Ggra2012.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=402bp
MGEPQDDRPFVAANLYRTDVFHTALYDAPPPLPPPLTPSPSCSQPPPAPP
PPQPPPLPPSQPLAAPPQPLAAPRVDAVAGRERLSPLSEAVCAAEGSRAR
SAAATASVGARVSKRRRFRFKEQHDVAMLQTVLHTRAHVAPHGQALRLFE
DATALLFERGALADVTDGPLPTAKTVWDRFRHLVHTHRGRALGASAGRGQ
LFRERAALLDAIVSDVDREREQREEHQQRLQQQHFVIRQQCVQGALLSPS
ASGSASAKRAAIGLSGRVVRRKIMAHGALSTSEQVVSGVDGAEALNESNE
DVHAASSGAEGAALTQEALCESRGDVERLRLELELRRMEADEKERRRRFE
IEQRFVNIEERRTAVEVRRLQMEEDERKNARQERQLLTSLLTTLANGLLN
K*
back to top

mRNA from alignment at tig00000925_pilon:140862..142067+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2012.t1 ID=Ggra2012.t1|Name=Ggra2012.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1206bp|location=Sequence derived from alignment at tig00000925_pilon:140862..142067+ (Gracilaria gracilis GNS1m male)
ATGGGCGAACCGCAAGACGATCGCCCGTTCGTCGCCGCAAACCTGTACCG
CACCGACGTCTTCCACACCGCGCTGTACGACGcgccgccgccgctgccgc
cgccgctcaccccgtccccgtcctgctcgcagccgccgcccgccccgccg
ccgccgcagccgccgccgctgccgccctcgcagccgctcgccgcgccgcc
gcagccgctcgccgcgccgcgtgtcgacgccgtcgccggccgcgagcggc
tgtcgccgcTGAGCGAGGCCGTGTGCGCGGCGGAGGGGTCGCGCGCGCGC
TCGGCAGCGGCGACGGCGTCCGTGGGCGCGCGCGTGTCGAAGAGACGGCG
CTTCCGCTTCAAGGAGCAGCACGACGTGGCCATGTTACAGACGGTGCTTC
ACACGCGCGCGCACGTGGCGCCGCACGGGCAGGCACTGCGGCTGTTCGAA
GACGCCACGGCGCTTTTGTTCGAACGCGGCGCGCTGGCAGACGTGACGGA
CGGCCCGTTGCCCACGGCAAAGACCGTGTGGGATCGGTTCCGACACCTGG
TGCACACGCACCGCGGGCGTGCGCTGGGCGCCAGCGCCGGCAGGGGGCAG
CTGTTCAGGGAGCGAGCCGCGCTTTTGGACGCCATTGTGAGCGACGTGGA
TCGTGAGCGCGAGCAGAGGGAGGAGCATCAACAACGGCTGCAACAGCAGC
ACTTTGTGATTCGGCAGCAGTGCGTGCAGGGCGCGCTGCTGTCGCCGTCG
GCCAGCGGCTCGGCCTCGGCGAAGCGCGCCGCGATTGGGTTGAGTGGGCG
CGTGGTGAGGAGGAAGATAATGGCGCACGGTGCGCTGTCGACGTCGGAGC
AGGTGGTGTCGGGCGTGGACGGCGCGGAGGCGCTCAACGAGAGTAACGAG
GATGTGCACGCCGCGAGCAGCGGCGCGGAGGGCGCGGCGCTCACGCAGGA
GGCGCTGTGTGAGTCGCGCGGCGACGTGGAACGGCTGAGACTGGAGCTGG
AGCTGCGGCGCATGGAGGCGGATGAGAAGGAACGGCGACGACGCTTCGAG
ATCGAGCAGCGCTTCGTGAACATCGAGGAGCGCCGCACGGCCGTGGAGGT
GCGCCGCTTGCAGATGGAGGAGGATGAACGGAAGAACGCGCGGCAGGAGC
GCCAATTGTTGACGTCGCTGCTGACCACGCTGGCTAACGGACTGCTCAAC
AAGTGA
back to top

Coding sequence (CDS) from alignment at tig00000925_pilon:140862..142067+

>Ggra2012.t1 ID=Ggra2012.t1|Name=Ggra2012.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1206bp|location=Sequence derived from alignment at tig00000925_pilon:140862..142067+ (Gracilaria gracilis GNS1m male)
ATGGGCGAACCGCAAGACGATCGCCCGTTCGTCGCCGCAAACCTGTACCG
CACCGACGTCTTCCACACCGCGCTGTACGACGcgccgccgccgctgccgc
cgccgctcaccccgtccccgtcctgctcgcagccgccgcccgccccgccg
ccgccgcagccgccgccgctgccgccctcgcagccgctcgccgcgccgcc
gcagccgctcgccgcgccgcgtgtcgacgccgtcgccggccgcgagcggc
tgtcgccgcTGAGCGAGGCCGTGTGCGCGGCGGAGGGGTCGCGCGCGCGC
TCGGCAGCGGCGACGGCGTCCGTGGGCGCGCGCGTGTCGAAGAGACGGCG
CTTCCGCTTCAAGGAGCAGCACGACGTGGCCATGTTACAGACGGTGCTTC
ACACGCGCGCGCACGTGGCGCCGCACGGGCAGGCACTGCGGCTGTTCGAA
GACGCCACGGCGCTTTTGTTCGAACGCGGCGCGCTGGCAGACGTGACGGA
CGGCCCGTTGCCCACGGCAAAGACCGTGTGGGATCGGTTCCGACACCTGG
TGCACACGCACCGCGGGCGTGCGCTGGGCGCCAGCGCCGGCAGGGGGCAG
CTGTTCAGGGAGCGAGCCGCGCTTTTGGACGCCATTGTGAGCGACGTGGA
TCGTGAGCGCGAGCAGAGGGAGGAGCATCAACAACGGCTGCAACAGCAGC
ACTTTGTGATTCGGCAGCAGTGCGTGCAGGGCGCGCTGCTGTCGCCGTCG
GCCAGCGGCTCGGCCTCGGCGAAGCGCGCCGCGATTGGGTTGAGTGGGCG
CGTGGTGAGGAGGAAGATAATGGCGCACGGTGCGCTGTCGACGTCGGAGC
AGGTGGTGTCGGGCGTGGACGGCGCGGAGGCGCTCAACGAGAGTAACGAG
GATGTGCACGCCGCGAGCAGCGGCGCGGAGGGCGCGGCGCTCACGCAGGA
GGCGCTGTGTGAGTCGCGCGGCGACGTGGAACGGCTGAGACTGGAGCTGG
AGCTGCGGCGCATGGAGGCGGATGAGAAGGAACGGCGACGACGCTTCGAG
ATCGAGCAGCGCTTCGTGAACATCGAGGAGCGCCGCACGGCCGTGGAGGT
GCGCCGCTTGCAGATGGAGGAGGATGAACGGAAGAACGCGCGGCAGGAGC
GCCAATTGTTGACGTCGCTGCTGACCACGCTGGCTAACGGACTGCTCAAC
AAGTGA
back to top