Ggra2010.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2010.t1
Unique NameGgra2010.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length319
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000925_piloncontigtig00000925_pilon:138078..139034 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMG217CT
PFAMsadh_short
Max annot lvl2759|Eukaryota
KEGG rclassRC01008
KEGG koko:K00218
KEGG ReactionR03845,R06286
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
Evalue2.54e-119
EggNOG OGsCOG1028@1|root,KOG1208@2759|Eukaryota
EC1.3.1.33
Descriptionoxidation-reduction process
COG categoryIQ
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2010Ggra2010Gracilaria gracilis GNS1m malegenetig00000925_pilon 138078..139034 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2010.t1.stop1Ggra2010.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000925_pilon 138078..138080 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2010.t1.CDS1Ggra2010.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000925_pilon 138078..139034 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2010.t1.exon1Ggra2010.t1.exon1Gracilaria gracilis GNS1m maleexontig00000925_pilon 138078..139034 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2010.t1.start1Ggra2010.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000925_pilon 139032..139034 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2010.t1Ggra2010.t1Gracilaria gracilis GNS1m malepolypeptidetig00000925_pilon 138078..139034 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2010.t1 ID=Ggra2010.t1|Name=Ggra2010.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=319bp
MSFKPYTAIVTGASSSIGLHAAKELVARGDYHVVMAVRNVEKAQRAAAEL
RMPPDSYSVLQLDLAKLSSVRQFVAAFQSQFSSLNALVCNAATWHPKDKK
PRFTEDGYDETVQVNHLSHFLLANLLLPMLKRAQGRCVFLATQTHNPDTL
PGKIPPQADLGTLQGMSSGFKTMPGTIDGKAFEPTKAYKDSKACNILTMT
EMHRRFASSGVIFSAIYPGCIAQSDLFREKRGWFRWFFPLFQKYITKQLV
PVEEAGRRVALVASDGRFGDSGTYWQWRGSYLQGIDKTEPVQIDPTEKEA
GKAEMLWDLSAKLVNMGA*
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spliced messenger RNA

>Ggra2010.t1 ID=Ggra2010.t1|Name=Ggra2010.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=957bp|location=Sequence derived from alignment at tig00000925_pilon:138078..139034- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCTTCAAGCCGTACACCGCCATCGTCACGGGCGCCTCATCGTCGAT
CGGGCTGCACGCCGCCAAGGAGCTCGTTGCGCGCGGCGACTATCACGTCG
TCATGGCCGTGCGTAACGTCGAAAAGGCCCAACGTGCCGCAGCTGAGCTC
CGCATGCCGCCGGACTCTTACTCCGTGCTGCAGCTCGATCTGGCCAAGCT
GTCGTCCGTGCGCCAGTTCGTGGCCGCCTTCCAGTCGCAGTTCAGCTCGC
TCAATGCGCTGGTTTGCAATGCAGCTACCTGGCATCCTAAGGATAAGAAA
CCGAGGTTCACGGAGGATGGCTACGATGAGACCGTGCAGGTCAATCATTT
GTCGCACTTCTTGTTGGCCAACTTGCTGCTCCCCATGCTCAAGCGTGCCC
AGGGTCGCTGTGTCTTCCTAGCCACACAGACCCATAACCCGGACACGCTG
CCCGGCAAGATCCCGCCGCAGGCTGACTTGGGAACACTGCAGGGTATGAG
CAGTGGCTTCAAGACCATGCCTGGTACCATTGACGGCAAGGCTTTTGAGC
CCACAAAGGCCTACAAGGATAGCAAGGCCTGCAACATCCTCACCATGACC
GAGATGCACCGCCGATTCGCATCGTCCGGCGTCATCTTTTCGGCTATCTA
CCCCGGTTGCATTGCGCAATCGGATCTGTTCCGTGAGAAGCGTGGATGGT
TCAGATGGTTCTTCCCGCTCTTCCAGAAGTATATCACCAAGCAATTGGTG
CCGGTGGAGGAGGCTGGTAGGAGAGTGGCTCTTGTCGCCTCTGATGGACG
CTTTGGAGACTCGGGTACTTACTGGCAGTGGAGAGGCTCTTATCTGCAGG
GTATTGACAAGACCGAACCCGTGCAGATTGATCCCACGGAGAAGGAGGCT
GGTAAGGCCGAAATGCTTTGGGATCTCAGTGCCAAGCTCGTCAATATGGG
AGCTTGA
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protein sequence of Ggra2010.t1

>Ggra2010.t1 ID=Ggra2010.t1|Name=Ggra2010.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=319bp
MSFKPYTAIVTGASSSIGLHAAKELVARGDYHVVMAVRNVEKAQRAAAEL
RMPPDSYSVLQLDLAKLSSVRQFVAAFQSQFSSLNALVCNAATWHPKDKK
PRFTEDGYDETVQVNHLSHFLLANLLLPMLKRAQGRCVFLATQTHNPDTL
PGKIPPQADLGTLQGMSSGFKTMPGTIDGKAFEPTKAYKDSKACNILTMT
EMHRRFASSGVIFSAIYPGCIAQSDLFREKRGWFRWFFPLFQKYITKQLV
PVEEAGRRVALVASDGRFGDSGTYWQWRGSYLQGIDKTEPVQIDPTEKEA
GKAEMLWDLSAKLVNMGA*
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mRNA from alignment at tig00000925_pilon:138078..139034-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2010.t1 ID=Ggra2010.t1|Name=Ggra2010.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=957bp|location=Sequence derived from alignment at tig00000925_pilon:138078..139034- (Gracilaria gracilis GNS1m male)
ATGTCCTTCAAGCCGTACACCGCCATCGTCACGGGCGCCTCATCGTCGAT
CGGGCTGCACGCCGCCAAGGAGCTCGTTGCGCGCGGCGACTATCACGTCG
TCATGGCCGTGCGTAACGTCGAAAAGGCCCAACGTGCCGCAGCTGAGCTC
CGCATGCCGCCGGACTCTTACTCCGTGCTGCAGCTCGATCTGGCCAAGCT
GTCGTCCGTGCGCCAGTTCGTGGCCGCCTTCCAGTCGCAGTTCAGCTCGC
TCAATGCGCTGGTTTGCAATGCAGCTACCTGGCATCCTAAGGATAAGAAA
CCGAGGTTCACGGAGGATGGCTACGATGAGACCGTGCAGGTCAATCATTT
GTCGCACTTCTTGTTGGCCAACTTGCTGCTCCCCATGCTCAAGCGTGCCC
AGGGTCGCTGTGTCTTCCTAGCCACACAGACCCATAACCCGGACACGCTG
CCCGGCAAGATCCCGCCGCAGGCTGACTTGGGAACACTGCAGGGTATGAG
CAGTGGCTTCAAGACCATGCCTGGTACCATTGACGGCAAGGCTTTTGAGC
CCACAAAGGCCTACAAGGATAGCAAGGCCTGCAACATCCTCACCATGACC
GAGATGCACCGCCGATTCGCATCGTCCGGCGTCATCTTTTCGGCTATCTA
CCCCGGTTGCATTGCGCAATCGGATCTGTTCCGTGAGAAGCGTGGATGGT
TCAGATGGTTCTTCCCGCTCTTCCAGAAGTATATCACCAAGCAATTGGTG
CCGGTGGAGGAGGCTGGTAGGAGAGTGGCTCTTGTCGCCTCTGATGGACG
CTTTGGAGACTCGGGTACTTACTGGCAGTGGAGAGGCTCTTATCTGCAGG
GTATTGACAAGACCGAACCCGTGCAGATTGATCCCACGGAGAAGGAGGCT
GGTAAGGCCGAAATGCTTTGGGATCTCAGTGCCAAGCTCGTCAATATGGG
AGCTTGA
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Coding sequence (CDS) from alignment at tig00000925_pilon:138078..139034-

>Ggra2010.t1 ID=Ggra2010.t1|Name=Ggra2010.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=957bp|location=Sequence derived from alignment at tig00000925_pilon:138078..139034- (Gracilaria gracilis GNS1m male)
ATGTCCTTCAAGCCGTACACCGCCATCGTCACGGGCGCCTCATCGTCGAT
CGGGCTGCACGCCGCCAAGGAGCTCGTTGCGCGCGGCGACTATCACGTCG
TCATGGCCGTGCGTAACGTCGAAAAGGCCCAACGTGCCGCAGCTGAGCTC
CGCATGCCGCCGGACTCTTACTCCGTGCTGCAGCTCGATCTGGCCAAGCT
GTCGTCCGTGCGCCAGTTCGTGGCCGCCTTCCAGTCGCAGTTCAGCTCGC
TCAATGCGCTGGTTTGCAATGCAGCTACCTGGCATCCTAAGGATAAGAAA
CCGAGGTTCACGGAGGATGGCTACGATGAGACCGTGCAGGTCAATCATTT
GTCGCACTTCTTGTTGGCCAACTTGCTGCTCCCCATGCTCAAGCGTGCCC
AGGGTCGCTGTGTCTTCCTAGCCACACAGACCCATAACCCGGACACGCTG
CCCGGCAAGATCCCGCCGCAGGCTGACTTGGGAACACTGCAGGGTATGAG
CAGTGGCTTCAAGACCATGCCTGGTACCATTGACGGCAAGGCTTTTGAGC
CCACAAAGGCCTACAAGGATAGCAAGGCCTGCAACATCCTCACCATGACC
GAGATGCACCGCCGATTCGCATCGTCCGGCGTCATCTTTTCGGCTATCTA
CCCCGGTTGCATTGCGCAATCGGATCTGTTCCGTGAGAAGCGTGGATGGT
TCAGATGGTTCTTCCCGCTCTTCCAGAAGTATATCACCAAGCAATTGGTG
CCGGTGGAGGAGGCTGGTAGGAGAGTGGCTCTTGTCGCCTCTGATGGACG
CTTTGGAGACTCGGGTACTTACTGGCAGTGGAGAGGCTCTTATCTGCAGG
GTATTGACAAGACCGAACCCGTGCAGATTGATCCCACGGAGAAGGAGGCT
GGTAAGGCCGAAATGCTTTGGGATCTCAGTGCCAAGCTCGTCAATATGGG
AGCTTGA
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