Ggra201.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra201.t1
Unique NameGgra201.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length362
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000960_piloncontigtig00000960_pilon:91734..93264 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra201Ggra201Gracilaria gracilis GNS1m malegenetig00000960_pilon 91734..93264 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra201.t1Ggra201.t1Gracilaria gracilis GNS1m malepolypeptidetig00000960_pilon 91734..93264 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra201.t1.start1Ggra201.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000960_pilon 91734..91736 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra201.t1.CDS1Ggra201.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000960_pilon 91734..91867 +
Ggra201.t1.CDS2Ggra201.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000960_pilon 91954..92854 +
Ggra201.t1.CDS3Ggra201.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000960_pilon 93214..93264 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra201.t1.exon1Ggra201.t1.exon1Gracilaria gracilis GNS1m maleexontig00000960_pilon 91734..91867 +
Ggra201.t1.exon2Ggra201.t1.exon2Gracilaria gracilis GNS1m maleexontig00000960_pilon 91954..92854 +
Ggra201.t1.exon3Ggra201.t1.exon3Gracilaria gracilis GNS1m maleexontig00000960_pilon 93214..93264 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra201.t1.intron1Ggra201.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000960_pilon 91868..91953 +
Ggra201.t1.intron2Ggra201.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000960_pilon 92855..93213 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra201.t1.stop1Ggra201.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000960_pilon 93262..93264 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra201.t1 ID=Ggra201.t1|Name=Ggra201.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=362bp
MLPFGACMCGRWILIRPFAGNVPRSSRLKSSSKRISQPELRGPRWRKRSL
SFRSRKDDFSLSDFKPVGRRRLKWDNANDEYDSSLDGLRPGGKRRSSWDV
EDSERDDCSFGNVRSAMKRKLKWHNANDEDESSLMGLRPRGKRKSNRGVE
YSERQDSSFGNVSSVMKGKLKWDDAKDEDNGSLAFRRGRKRRYKWDVDQS
ERDNCSFASIEPRTKTKLNRDILHESEEDTSRPDKVRKRRKKMLSCDVVS
IRDESSSERRSAADKKCEASDIDGVHQGNDSSDEHPLDDRHGEVINLVSD
EDPDVVIDSSQRSIASVEMAWKMCIRQLENSKPDIFTGAEAKLQINAAEY
SGGIDGAPGYL*
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spliced messenger RNA

>Ggra201.t1 ID=Ggra201.t1|Name=Ggra201.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1086bp|location=Sequence derived from alignment at tig00000960_pilon:91734..93264+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTACCGTTTGGGGCCTGTATGTGCGGGAGATGGATACTTATTAGGCC
GTTTGCGGGCAACGTACCTCGCTCTAGCCGCCTCAAGTCTTCATCGAAGA
GGATCTCTCAACCGGAACTCCGAGGCCCCCGTTGgcgcaagaggagttta
agcTTCAGGTCTAGAAAGGACGACTTCAGCCTTTCAGACTTTAAGCCCGT
GGGAAGGAGGAGGTTGAAATGGGATAACGCCAACGATGAATACGACAGCT
CTCTTGACGGACTTCGACCCGGGGGAAAGAGGAGGTCTAGTTGGGACGTC
GAGGATTCAGAAAGGGATGACTGCTCTTTCGGTAACGTTAGATCCGCGAT
GAAGAGGAAGCTGAAGTGGCATAACGCCAACGATGAGGACGAAAGCTCTC
TTATGGGACTTCGACCCCGGGGAAAGAGGAAGTCTAATCGGGGTGTCGAG
TACTCAGAAAGGCAGGACTCTTCCTTTGGTAACGTTAGCTCCGTGATGAA
GGGGAAGTTGAAGTGGGATGACGCCAAAGATGAAGACAACGGCTCTCTTG
CATTTCGACGAGGGAGGAAGAGGAGGTATAAGTGGGACGTCGACCAGTCA
GAAAGGGACAACTGCTCCTTTGCTAGCATTGAACCCCGTACGAAGACGAA
GTTGAACCGGGATATCCTCCATGAGTCAGAAGAAGACACCTCCCGACCAG
ATAAGGTTCGAAAGAGGCGGAAGAAGATGTTGAGCTGTGACGTCGTAAGT
ATCAGAGATGAATCTTCAAGTGAGAGGAGATCTGCGGCGGATAAGAAATG
TGAGGCGAGCGACATCGATGGCGTGCACCAAGGCAATGATTCGTCTGATG
AGCATCCTCTTGACGACCGTCATGGTGAAGTTATAAATCTTGTGTCAGAT
GAAGATCCTGATGTGGTGATAGATTCATCTCAAAGATCGATTGCTTCGGT
AGAAATGGCATGGAAGATGTGCATTCGTCAACTAGAGAACTCGAAGCCAG
ACATCTTCACGGGAGCTGAAGCAAAACTGCAAATCAATGCAGCAGAATAT
TCAGGAGGTATCGATGGTGCTCCAGGCTATCTGTGA
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protein sequence of Ggra201.t1

>Ggra201.t1 ID=Ggra201.t1|Name=Ggra201.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=362bp
MLPFGACMCGRWILIRPFAGNVPRSSRLKSSSKRISQPELRGPRWRKRSL
SFRSRKDDFSLSDFKPVGRRRLKWDNANDEYDSSLDGLRPGGKRRSSWDV
EDSERDDCSFGNVRSAMKRKLKWHNANDEDESSLMGLRPRGKRKSNRGVE
YSERQDSSFGNVSSVMKGKLKWDDAKDEDNGSLAFRRGRKRRYKWDVDQS
ERDNCSFASIEPRTKTKLNRDILHESEEDTSRPDKVRKRRKKMLSCDVVS
IRDESSSERRSAADKKCEASDIDGVHQGNDSSDEHPLDDRHGEVINLVSD
EDPDVVIDSSQRSIASVEMAWKMCIRQLENSKPDIFTGAEAKLQINAAEY
SGGIDGAPGYL*
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mRNA from alignment at tig00000960_pilon:91734..93264+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra201.t1 ID=Ggra201.t1|Name=Ggra201.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1531bp|location=Sequence derived from alignment at tig00000960_pilon:91734..93264+ (Gracilaria gracilis GNS1m male)
ATGTTACCGTTTGGGGCCTGTATGTGCGGGAGATGGATACTTATTAGGCC
GTTTGCGGGCAACGTACCTCGCTCTAGCCGCCTCAAGTCTTCATCGAAGA
GGATCTCTCAACCGGAACTCCGAGGCCCCCGTTGGTAAGTTAgaacggca
atatgccttcaagaagtggaaagattggctcctatcgggacatcaggccc
cttgcaaaaccttctctcaggcgcaagaggagtttaagcTTCAGGTCTAG
AAAGGACGACTTCAGCCTTTCAGACTTTAAGCCCGTGGGAAGGAGGAGGT
TGAAATGGGATAACGCCAACGATGAATACGACAGCTCTCTTGACGGACTT
CGACCCGGGGGAAAGAGGAGGTCTAGTTGGGACGTCGAGGATTCAGAAAG
GGATGACTGCTCTTTCGGTAACGTTAGATCCGCGATGAAGAGGAAGCTGA
AGTGGCATAACGCCAACGATGAGGACGAAAGCTCTCTTATGGGACTTCGA
CCCCGGGGAAAGAGGAAGTCTAATCGGGGTGTCGAGTACTCAGAAAGGCA
GGACTCTTCCTTTGGTAACGTTAGCTCCGTGATGAAGGGGAAGTTGAAGT
GGGATGACGCCAAAGATGAAGACAACGGCTCTCTTGCATTTCGACGAGGG
AGGAAGAGGAGGTATAAGTGGGACGTCGACCAGTCAGAAAGGGACAACTG
CTCCTTTGCTAGCATTGAACCCCGTACGAAGACGAAGTTGAACCGGGATA
TCCTCCATGAGTCAGAAGAAGACACCTCCCGACCAGATAAGGTTCGAAAG
AGGCGGAAGAAGATGTTGAGCTGTGACGTCGTAAGTATCAGAGATGAATC
TTCAAGTGAGAGGAGATCTGCGGCGGATAAGAAATGTGAGGCGAGCGACA
TCGATGGCGTGCACCAAGGCAATGATTCGTCTGATGAGCATCCTCTTGAC
GACCGTCATGGTGAAGTTATAAATCTTGTGTCAGATGAAGATCCTGATGT
GGTGATAGATTCATCTCAAAGATCGATTGCTTCGGTAGAAATGGCATGGA
AGATGTGCATTCGTCAACTAGAGAACTCGAAGCCAGACATCTTCACGGGA
GCTGAAGCAAAACTGCAAATCGTCTCCAAAGCgcgacaggggacctccgt
ttacgagggaattagggtgacagaggacaactgcctcggcttacgagctg
tcctgacagcttttaaaaagtctgaggggcccaaagcacggtctgaaagg
gcggaaaaggagcttgtgactactgtttcacagtttctgcgttggtccgt
agcgagtacatattgttccaaactggatgtgtggaaagaagaaactctgt
tcCGAAGTGTGGCACATATGAAACTGGTGGAACGTTTCTTAAGGTACTTC
CAAAAGCGTTGTGAAGTTGTTACCGCGCGGAGGAAAGCGAGTCATCTAAT
GATCGTCTGCGATGCTGCCATTTCGAGTAGAATGCAGCAGAATATTCAGG
AGGTATCGATGGTGCTCCAGGCTATCTGTGA
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Coding sequence (CDS) from alignment at tig00000960_pilon:91734..93264+

>Ggra201.t1 ID=Ggra201.t1|Name=Ggra201.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1086bp|location=Sequence derived from alignment at tig00000960_pilon:91734..93264+ (Gracilaria gracilis GNS1m male)
ATGTTACCGTTTGGGGCCTGTATGTGCGGGAGATGGATACTTATTAGGCC
GTTTGCGGGCAACGTACCTCGCTCTAGCCGCCTCAAGTCTTCATCGAAGA
GGATCTCTCAACCGGAACTCCGAGGCCCCCGTTGgcgcaagaggagttta
agcTTCAGGTCTAGAAAGGACGACTTCAGCCTTTCAGACTTTAAGCCCGT
GGGAAGGAGGAGGTTGAAATGGGATAACGCCAACGATGAATACGACAGCT
CTCTTGACGGACTTCGACCCGGGGGAAAGAGGAGGTCTAGTTGGGACGTC
GAGGATTCAGAAAGGGATGACTGCTCTTTCGGTAACGTTAGATCCGCGAT
GAAGAGGAAGCTGAAGTGGCATAACGCCAACGATGAGGACGAAAGCTCTC
TTATGGGACTTCGACCCCGGGGAAAGAGGAAGTCTAATCGGGGTGTCGAG
TACTCAGAAAGGCAGGACTCTTCCTTTGGTAACGTTAGCTCCGTGATGAA
GGGGAAGTTGAAGTGGGATGACGCCAAAGATGAAGACAACGGCTCTCTTG
CATTTCGACGAGGGAGGAAGAGGAGGTATAAGTGGGACGTCGACCAGTCA
GAAAGGGACAACTGCTCCTTTGCTAGCATTGAACCCCGTACGAAGACGAA
GTTGAACCGGGATATCCTCCATGAGTCAGAAGAAGACACCTCCCGACCAG
ATAAGGTTCGAAAGAGGCGGAAGAAGATGTTGAGCTGTGACGTCGTAAGT
ATCAGAGATGAATCTTCAAGTGAGAGGAGATCTGCGGCGGATAAGAAATG
TGAGGCGAGCGACATCGATGGCGTGCACCAAGGCAATGATTCGTCTGATG
AGCATCCTCTTGACGACCGTCATGGTGAAGTTATAAATCTTGTGTCAGAT
GAAGATCCTGATGTGGTGATAGATTCATCTCAAAGATCGATTGCTTCGGT
AGAAATGGCATGGAAGATGTGCATTCGTCAACTAGAGAACTCGAAGCCAG
ACATCTTCACGGGAGCTGAAGCAAAACTGCAAATCAATGCAGCAGAATAT
TCAGGAGGTATCGATGGTGCTCCAGGCTATCTGTGA
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