Ggra2005.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2005.t1
Unique NameGgra2005.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length306
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000925_piloncontigtig00000925_pilon:129153..130070 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2005Ggra2005Gracilaria gracilis GNS1m malegenetig00000925_pilon 129153..130070 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2005.t1.stop1Ggra2005.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000925_pilon 129153..129155 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2005.t1.CDS1Ggra2005.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000925_pilon 129153..130070 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2005.t1.exon1Ggra2005.t1.exon1Gracilaria gracilis GNS1m maleexontig00000925_pilon 129153..130070 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2005.t1.start1Ggra2005.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000925_pilon 130068..130070 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2005.t1Ggra2005.t1Gracilaria gracilis GNS1m malepolypeptidetig00000925_pilon 129153..130070 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2005.t1 ID=Ggra2005.t1|Name=Ggra2005.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=306bp
MSTAYSTEEDVTLLQAVLQSGAHLRFRTDQEINPIKHCISKPIMNEVAEK
YRAIKREEGFRFPPRTNKGLSHRFRNIVYRYGVGSLAETGTEEVSLLRLR
LLNKIVRDRENRNEKKRKRSLEFKTENCEEEPKELPEGRPKKKVWVSLRS
KEKRQSDTEEPSDPRSDGLSPSEEVSPTKEISNTVGPESKLKVKKERELV
HETVVNSHGDERARCLQFIVKMLGQSEERRFRMEERTLAMEEALLGTKEV
SNKSETHSKEDFQYGELRLECMKTILAKREVELRGKELEMRQREKMLCMM
EKMLG*
back to top

spliced messenger RNA

>Ggra2005.t1 ID=Ggra2005.t1|Name=Ggra2005.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=918bp|location=Sequence derived from alignment at tig00000925_pilon:129153..130070- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCACAGCATATTCAACCGAGGAAGATGTCACGCTGCTGCAGGCTGT
CCTGCAGAGCGGGGCTCACCTACGTTTTAGGACGGATCAAGAGATTAATC
CTATAAAACATTGCATTTCGAAACCTATCATGAACGAAGTTGCTGAGAAG
TACCGTGCCATAAAACGGGAGGAGGGGTTTAGGTTTCCGCCAAGAACGAA
TAAGGGTCTGAGCCATCGTTTTCGTAACATAGTGTACCGATATGGAGTGG
GATCGCTGGCGGAAACTGGAACTGAGGAAGTTTCTTTGCTTCGCCTTCGT
TTGCTCAACAAAATTGTCAGAGACCGAGAAAATCGAAATGAAAAGAAACG
GAAGCGAAGTTTGGAGTTTAAGACAGAGAATTGCGAAGAGGAACCGAAGG
AGCTCCCCGAAGGTAGACCAAAGAAAAAGGTATGGGTTTCTTTGAGAAGC
AAGGAAAAGAGACAGAGCGATACAGAAGAACCGAGTGATCCGCGTTCCGA
TGGGTTGTCGCCATCAGAAGAAGTTTCTCCAACTAAAGAGATCAGTAATA
CGGTTGGTCCTGAATCAAAGCTGAAAGTCAAGAAAGAACGAGAGCTAGTG
CATGAAACAGTGGTGAACAGCCACGGTGATGAGAGAGCACGCTGTTTACA
ATTTATCGTGAAAATGTTAGGTCAGAGCGAAGAGAGACGGTTCAGAATGG
AGGAACGTACTTTGGCGATGGAAGAAGCATTGCTCGGTACCAAAGAAGTG
AGCAATAAGAGCGAAACGCACTCCAAAGAAGACTTCCAGTATGGGGAGCT
TCGCTTGGAATGCATGAAGACGATATTGGCAAAAAGAGAGGTGGAACTTC
GTGGAAAAGAGCTCGAAATGCGTCAGAGGGAAAAGATGCTGTGTATGATG
GAAAAGATGTTGGGGTGA
back to top

protein sequence of Ggra2005.t1

>Ggra2005.t1 ID=Ggra2005.t1|Name=Ggra2005.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=306bp
MSTAYSTEEDVTLLQAVLQSGAHLRFRTDQEINPIKHCISKPIMNEVAEK
YRAIKREEGFRFPPRTNKGLSHRFRNIVYRYGVGSLAETGTEEVSLLRLR
LLNKIVRDRENRNEKKRKRSLEFKTENCEEEPKELPEGRPKKKVWVSLRS
KEKRQSDTEEPSDPRSDGLSPSEEVSPTKEISNTVGPESKLKVKKERELV
HETVVNSHGDERARCLQFIVKMLGQSEERRFRMEERTLAMEEALLGTKEV
SNKSETHSKEDFQYGELRLECMKTILAKREVELRGKELEMRQREKMLCMM
EKMLG*
back to top

mRNA from alignment at tig00000925_pilon:129153..130070-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2005.t1 ID=Ggra2005.t1|Name=Ggra2005.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=918bp|location=Sequence derived from alignment at tig00000925_pilon:129153..130070- (Gracilaria gracilis GNS1m male)
ATGAGCACAGCATATTCAACCGAGGAAGATGTCACGCTGCTGCAGGCTGT
CCTGCAGAGCGGGGCTCACCTACGTTTTAGGACGGATCAAGAGATTAATC
CTATAAAACATTGCATTTCGAAACCTATCATGAACGAAGTTGCTGAGAAG
TACCGTGCCATAAAACGGGAGGAGGGGTTTAGGTTTCCGCCAAGAACGAA
TAAGGGTCTGAGCCATCGTTTTCGTAACATAGTGTACCGATATGGAGTGG
GATCGCTGGCGGAAACTGGAACTGAGGAAGTTTCTTTGCTTCGCCTTCGT
TTGCTCAACAAAATTGTCAGAGACCGAGAAAATCGAAATGAAAAGAAACG
GAAGCGAAGTTTGGAGTTTAAGACAGAGAATTGCGAAGAGGAACCGAAGG
AGCTCCCCGAAGGTAGACCAAAGAAAAAGGTATGGGTTTCTTTGAGAAGC
AAGGAAAAGAGACAGAGCGATACAGAAGAACCGAGTGATCCGCGTTCCGA
TGGGTTGTCGCCATCAGAAGAAGTTTCTCCAACTAAAGAGATCAGTAATA
CGGTTGGTCCTGAATCAAAGCTGAAAGTCAAGAAAGAACGAGAGCTAGTG
CATGAAACAGTGGTGAACAGCCACGGTGATGAGAGAGCACGCTGTTTACA
ATTTATCGTGAAAATGTTAGGTCAGAGCGAAGAGAGACGGTTCAGAATGG
AGGAACGTACTTTGGCGATGGAAGAAGCATTGCTCGGTACCAAAGAAGTG
AGCAATAAGAGCGAAACGCACTCCAAAGAAGACTTCCAGTATGGGGAGCT
TCGCTTGGAATGCATGAAGACGATATTGGCAAAAAGAGAGGTGGAACTTC
GTGGAAAAGAGCTCGAAATGCGTCAGAGGGAAAAGATGCTGTGTATGATG
GAAAAGATGTTGGGGTGA
back to top

Coding sequence (CDS) from alignment at tig00000925_pilon:129153..130070-

>Ggra2005.t1 ID=Ggra2005.t1|Name=Ggra2005.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=918bp|location=Sequence derived from alignment at tig00000925_pilon:129153..130070- (Gracilaria gracilis GNS1m male)
ATGAGCACAGCATATTCAACCGAGGAAGATGTCACGCTGCTGCAGGCTGT
CCTGCAGAGCGGGGCTCACCTACGTTTTAGGACGGATCAAGAGATTAATC
CTATAAAACATTGCATTTCGAAACCTATCATGAACGAAGTTGCTGAGAAG
TACCGTGCCATAAAACGGGAGGAGGGGTTTAGGTTTCCGCCAAGAACGAA
TAAGGGTCTGAGCCATCGTTTTCGTAACATAGTGTACCGATATGGAGTGG
GATCGCTGGCGGAAACTGGAACTGAGGAAGTTTCTTTGCTTCGCCTTCGT
TTGCTCAACAAAATTGTCAGAGACCGAGAAAATCGAAATGAAAAGAAACG
GAAGCGAAGTTTGGAGTTTAAGACAGAGAATTGCGAAGAGGAACCGAAGG
AGCTCCCCGAAGGTAGACCAAAGAAAAAGGTATGGGTTTCTTTGAGAAGC
AAGGAAAAGAGACAGAGCGATACAGAAGAACCGAGTGATCCGCGTTCCGA
TGGGTTGTCGCCATCAGAAGAAGTTTCTCCAACTAAAGAGATCAGTAATA
CGGTTGGTCCTGAATCAAAGCTGAAAGTCAAGAAAGAACGAGAGCTAGTG
CATGAAACAGTGGTGAACAGCCACGGTGATGAGAGAGCACGCTGTTTACA
ATTTATCGTGAAAATGTTAGGTCAGAGCGAAGAGAGACGGTTCAGAATGG
AGGAACGTACTTTGGCGATGGAAGAAGCATTGCTCGGTACCAAAGAAGTG
AGCAATAAGAGCGAAACGCACTCCAAAGAAGACTTCCAGTATGGGGAGCT
TCGCTTGGAATGCATGAAGACGATATTGGCAAAAAGAGAGGTGGAACTTC
GTGGAAAAGAGCTCGAAATGCGTCAGAGGGAAAAGATGCTGTGTATGATG
GAAAAGATGTTGGGGTGA
back to top