Ggra2003.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2003.t1
Unique NameGgra2003.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length452
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000925_piloncontigtig00000925_pilon:123387..124907 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5911.EAS07012
PFAMsMyb_DNA-binding
Max annot lvl5878|Ciliophora
KEGG koko:K09420
KEGG Pathwayko04151,ko05166,map04151,map05166
Evalue6.42e-40
EggNOG OGsCOG5147@1|root,KOG0048@2759|Eukaryota,3ZBQ4@5878|Ciliophora
DescriptionSANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
COG categoryK
BRITEko00000,ko00001,ko03000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2003Ggra2003Gracilaria gracilis GNS1m malegenetig00000925_pilon 123387..124907 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2003.t1Ggra2003.t1Gracilaria gracilis GNS1m malepolypeptidetig00000925_pilon 123387..124907 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2003.t1.start1Ggra2003.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000925_pilon 123387..123389 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2003.t1.CDS1Ggra2003.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000925_pilon 123387..123773 +
Ggra2003.t1.CDS2Ggra2003.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000925_pilon 123939..124907 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2003.t1.exon1Ggra2003.t1.exon1Gracilaria gracilis GNS1m maleexontig00000925_pilon 123387..123773 +
Ggra2003.t1.exon2Ggra2003.t1.exon2Gracilaria gracilis GNS1m maleexontig00000925_pilon 123939..124907 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2003.t1.intron1Ggra2003.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000925_pilon 123774..123938 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2003.t1.stop1Ggra2003.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000925_pilon 124905..124907 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2003.t1 ID=Ggra2003.t1|Name=Ggra2003.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=452bp
MGRSENDTYARGPWTKDEDSMLISLVNAHGPRNWTNLASRMPSRSGKQCR
ERWLNHLNPNIKKGAWTSDEDEKLVSLHKTIGNRWSEIAKHLPGRTDNAI
KNHWNSTIKRKIRPDGSGLISTPSCSSRRGSLRDNKRSGLQLWRSSQRHT
SDNAKARRSRTGAPKSDGHRSPRSTIHRISTPSRRKVHKSEDSSDKPEDK
KPSAVYETPAQNPRFPVIVLGSSLNVLSPQPLALKQEGTSLAGSESYSSV
TDPHSPSAGTSSQFYGYLDETANLSSTDTALVTNSSGTPNISNGFVPELE
PEQDFATNIPTSARRRLSTEVDERSDGRPSHKRQKSDTVCTVEDDPIPPF
LFESAIGDYGLETIPLADLGFAFSLADSDPISVNHSCLHSVGIGEDERMN
EMGLGPFDDVSEEIRDHADNEEFSNIYSSASLNYPSLIASINPIANPDYG
F*
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spliced messenger RNA

>Ggra2003.t1 ID=Ggra2003.t1|Name=Ggra2003.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1356bp|location=Sequence derived from alignment at tig00000925_pilon:123387..124907+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTCGCTCTGAGAACGATACCTACGCTAGAGGTCCGTGGACAAAAGA
TGAGGACTCGATGCTCATCTCGCTCGTCAATGCCCACGGTCCGCGAAACT
GGACTAATCTAGCTTCGCGAATGCCTAGTAGGTCAGGAAAGCAATGTCGT
GAACGTTGGCTTAATCACCTTAACCCTAATATTAAGAAAGGCGCGTGGAC
GTCAGATGAAGACGAAAAGCTTGTTTCTTTGCATAAAACTATTGGCAATC
GTTGGTCGGAGATTGCCAAACATCTCCCCGGTCGAACGGATAATGCGATT
AAGAATCATTGGAACTCGACTATAAAGCGAAAGATTCGCCCGGATGGTTC
CGGTTTGATATCTACACCGAGCTGTAGCAGTCGCCGTGGCAGCCTCCGAG
ATAACAAGAGAAGCGGTTTGCAGCTGTGGAGATCCAGTCAACGTCACACC
AGTGACAACGCTAAGGCTCGCAGAAGCAGAACCGGGGCGCCCAAATCCGA
TGGTCATCGCTCCCCGCGTTCGACTATCCATAGGATATCGACTCCCTCTC
GCAGAAAGGTTCACAAATCGGAAGATTCGTCCGATAAACCTGAAGACAAA
AAGCCCTCCGCCGTATATGAGACCCCAGCGCAAAATCCACGCTTCCCTGT
CATTGTTCTTGGTTCTTCCCTCAACGTTCTCTCACCCCAACCTCTCGCGC
TAAAGCAAGAAGGAACATCGCTCGCTGGAAGTGAAAGTTATTCGTCTGTC
ACAGACCCACACTCCCCATCTGCTGGAACTTCATCTCAGTTTTACGGCTA
TCTGGACGAGACTGCGAATCTATCTTCTACAGATACAGCACTTGTCACGA
ATTCTTCTGGGACGCCCAACATTTCGAATGGGTTTGTCCCTGAATTAGAA
CCAGAGCAAGATTTTGCAACAAATATTCCAACCAGTGCCCGCCGACGACT
CTCGACAGAAGTGGATGAGAGAAGTGATGGTCGTCCTTCCCACAAGCGTC
AGAAGAGTGATACTGTTTGTACAGTTGAAGACGATCCTATTCCTCCTTTT
CTCTTTGAAAGCGCGATAGGTGATTATGGCCTCGAAACAATACCGCTCGC
AGATCTGGGTTTCGCCTTTTCACTGGCTGACAGCGACCCTATCTCCGTTA
ACCATTCATGTTTGCATTCAGTCGGTATTGGTGAAGACGAGCGGATGAAC
GAAATGGGTCTAGGACCCTTCGACGATGTCTCTGAGGAAATACGGGATCA
TGCTGACAACGAAGAGTTTTCGAACATCTACAGCAGCGCGAGTTTGAACT
ATCCATCTCTGATAGCCTCAATCAACCCCATAGCTAATCCTGACTACGGA
TTCTAG
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protein sequence of Ggra2003.t1

>Ggra2003.t1 ID=Ggra2003.t1|Name=Ggra2003.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=452bp
MGRSENDTYARGPWTKDEDSMLISLVNAHGPRNWTNLASRMPSRSGKQCR
ERWLNHLNPNIKKGAWTSDEDEKLVSLHKTIGNRWSEIAKHLPGRTDNAI
KNHWNSTIKRKIRPDGSGLISTPSCSSRRGSLRDNKRSGLQLWRSSQRHT
SDNAKARRSRTGAPKSDGHRSPRSTIHRISTPSRRKVHKSEDSSDKPEDK
KPSAVYETPAQNPRFPVIVLGSSLNVLSPQPLALKQEGTSLAGSESYSSV
TDPHSPSAGTSSQFYGYLDETANLSSTDTALVTNSSGTPNISNGFVPELE
PEQDFATNIPTSARRRLSTEVDERSDGRPSHKRQKSDTVCTVEDDPIPPF
LFESAIGDYGLETIPLADLGFAFSLADSDPISVNHSCLHSVGIGEDERMN
EMGLGPFDDVSEEIRDHADNEEFSNIYSSASLNYPSLIASINPIANPDYG
F*
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mRNA from alignment at tig00000925_pilon:123387..124907+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2003.t1 ID=Ggra2003.t1|Name=Ggra2003.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1521bp|location=Sequence derived from alignment at tig00000925_pilon:123387..124907+ (Gracilaria gracilis GNS1m male)
ATGGGTCGCTCTGAGAACGATACCTACGCTAGAGGTCCGTGGACAAAAGA
TGAGGACTCGATGCTCATCTCGCTCGTCAATGCCCACGGTCCGCGAAACT
GGACTAATCTAGCTTCGCGAATGCCTAGTAGGTCAGGAAAGCAATGTCGT
GAACGTTGGCTTAATCACCTTAACCCTAATATTAAGAAAGGCGCGTGGAC
GTCAGATGAAGACGAAAAGCTTGTTTCTTTGCATAAAACTATTGGCAATC
GTTGGTCGGAGATTGCCAAACATCTCCCCGGTCGAACGGATAATGCGATT
AAGAATCATTGGAACTCGACTATAAAGCGAAAGATTCGCCCGGATGGTTC
CGGTTTGATATCTACACCGAGCTGTAGCAGTCGCCGTGTCCctgtgtctg
cttctgcatctgcgtccgcaagcactccccctgcttctgtctctgcttcc
gcccctgcctctgcttccgcacccgcttccgccacagtatctgcgtctgc
ctctgAGCGAACGTCGAGCTCATCCCAGTCTCTGTCTTCTCGGACGAGAC
AGGGCAGCCTCCGAGATAACAAGAGAAGCGGTTTGCAGCTGTGGAGATCC
AGTCAACGTCACACCAGTGACAACGCTAAGGCTCGCAGAAGCAGAACCGG
GGCGCCCAAATCCGATGGTCATCGCTCCCCGCGTTCGACTATCCATAGGA
TATCGACTCCCTCTCGCAGAAAGGTTCACAAATCGGAAGATTCGTCCGAT
AAACCTGAAGACAAAAAGCCCTCCGCCGTATATGAGACCCCAGCGCAAAA
TCCACGCTTCCCTGTCATTGTTCTTGGTTCTTCCCTCAACGTTCTCTCAC
CCCAACCTCTCGCGCTAAAGCAAGAAGGAACATCGCTCGCTGGAAGTGAA
AGTTATTCGTCTGTCACAGACCCACACTCCCCATCTGCTGGAACTTCATC
TCAGTTTTACGGCTATCTGGACGAGACTGCGAATCTATCTTCTACAGATA
CAGCACTTGTCACGAATTCTTCTGGGACGCCCAACATTTCGAATGGGTTT
GTCCCTGAATTAGAACCAGAGCAAGATTTTGCAACAAATATTCCAACCAG
TGCCCGCCGACGACTCTCGACAGAAGTGGATGAGAGAAGTGATGGTCGTC
CTTCCCACAAGCGTCAGAAGAGTGATACTGTTTGTACAGTTGAAGACGAT
CCTATTCCTCCTTTTCTCTTTGAAAGCGCGATAGGTGATTATGGCCTCGA
AACAATACCGCTCGCAGATCTGGGTTTCGCCTTTTCACTGGCTGACAGCG
ACCCTATCTCCGTTAACCATTCATGTTTGCATTCAGTCGGTATTGGTGAA
GACGAGCGGATGAACGAAATGGGTCTAGGACCCTTCGACGATGTCTCTGA
GGAAATACGGGATCATGCTGACAACGAAGAGTTTTCGAACATCTACAGCA
GCGCGAGTTTGAACTATCCATCTCTGATAGCCTCAATCAACCCCATAGCT
AATCCTGACTACGGATTCTAG
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Coding sequence (CDS) from alignment at tig00000925_pilon:123387..124907+

>Ggra2003.t1 ID=Ggra2003.t1|Name=Ggra2003.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1356bp|location=Sequence derived from alignment at tig00000925_pilon:123387..124907+ (Gracilaria gracilis GNS1m male)
ATGGGTCGCTCTGAGAACGATACCTACGCTAGAGGTCCGTGGACAAAAGA
TGAGGACTCGATGCTCATCTCGCTCGTCAATGCCCACGGTCCGCGAAACT
GGACTAATCTAGCTTCGCGAATGCCTAGTAGGTCAGGAAAGCAATGTCGT
GAACGTTGGCTTAATCACCTTAACCCTAATATTAAGAAAGGCGCGTGGAC
GTCAGATGAAGACGAAAAGCTTGTTTCTTTGCATAAAACTATTGGCAATC
GTTGGTCGGAGATTGCCAAACATCTCCCCGGTCGAACGGATAATGCGATT
AAGAATCATTGGAACTCGACTATAAAGCGAAAGATTCGCCCGGATGGTTC
CGGTTTGATATCTACACCGAGCTGTAGCAGTCGCCGTGGCAGCCTCCGAG
ATAACAAGAGAAGCGGTTTGCAGCTGTGGAGATCCAGTCAACGTCACACC
AGTGACAACGCTAAGGCTCGCAGAAGCAGAACCGGGGCGCCCAAATCCGA
TGGTCATCGCTCCCCGCGTTCGACTATCCATAGGATATCGACTCCCTCTC
GCAGAAAGGTTCACAAATCGGAAGATTCGTCCGATAAACCTGAAGACAAA
AAGCCCTCCGCCGTATATGAGACCCCAGCGCAAAATCCACGCTTCCCTGT
CATTGTTCTTGGTTCTTCCCTCAACGTTCTCTCACCCCAACCTCTCGCGC
TAAAGCAAGAAGGAACATCGCTCGCTGGAAGTGAAAGTTATTCGTCTGTC
ACAGACCCACACTCCCCATCTGCTGGAACTTCATCTCAGTTTTACGGCTA
TCTGGACGAGACTGCGAATCTATCTTCTACAGATACAGCACTTGTCACGA
ATTCTTCTGGGACGCCCAACATTTCGAATGGGTTTGTCCCTGAATTAGAA
CCAGAGCAAGATTTTGCAACAAATATTCCAACCAGTGCCCGCCGACGACT
CTCGACAGAAGTGGATGAGAGAAGTGATGGTCGTCCTTCCCACAAGCGTC
AGAAGAGTGATACTGTTTGTACAGTTGAAGACGATCCTATTCCTCCTTTT
CTCTTTGAAAGCGCGATAGGTGATTATGGCCTCGAAACAATACCGCTCGC
AGATCTGGGTTTCGCCTTTTCACTGGCTGACAGCGACCCTATCTCCGTTA
ACCATTCATGTTTGCATTCAGTCGGTATTGGTGAAGACGAGCGGATGAAC
GAAATGGGTCTAGGACCCTTCGACGATGTCTCTGAGGAAATACGGGATCA
TGCTGACAACGAAGAGTTTTCGAACATCTACAGCAGCGCGAGTTTGAACT
ATCCATCTCTGATAGCCTCAATCAACCCCATAGCTAATCCTGACTACGGA
TTCTAG
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