Ggra2000.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2000.t1
Unique NameGgra2000.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length360
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000925_piloncontigtig00000925_pilon:117508..118587 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707946.1
Preferred nameFBP1
PFAMsFBPase
Max annot lvl2759|Eukaryota
KEGG rclassRC00017
KEGG koko:K03841
KEGG ReactionR00762,R04780
KEGG Pathwayko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko04152,ko04910,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map04152,map04910
KEGG ModuleM00003,M00165,M00167,M00344
GOsGO:0000122,GO:0000166,GO:0000988,GO:0000989,GO:0001076,GO:0001191,GO:0001558,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005886,GO:0005975,GO:0005984,GO:0005985,GO:0005986,GO:0005996,GO:0006000,GO:0006002,GO:0006006,GO:0006094,GO:0006109,GO:0006110,GO:0006111,GO:0006140,GO:0006355,GO:0006357,GO:0006793,GO:0006796,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009311,GO:0009312,GO:0009719,GO:0009725,GO:0009889,GO:0009890,GO:0009892,GO:0009894,GO:0009895,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010243,GO:0010468,GO:0010556,GO:0010558,GO:0010563,GO:0010605,GO:0010629,GO:0010646,GO:0010648,GO:0010675,GO:0010677,GO:0010906,GO:0016020,GO:0016043,GO:0016051,GO:0016208,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0017076,GO:0019203,GO:0019219,GO:0019220,GO:0019222,GO:0019318,GO:0019319,GO:0019637,GO:0022607,GO:0023051,GO:0023057,GO:0030016,GO:0030017,GO:0030018,GO:0030054,GO:0030246,GO:0030308,GO:0030388,GO:0030554,GO:0030808,GO:0030809,GO:0030811,GO:0030812,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031329,GO:0031330,GO:0031674,GO:0031974,GO:0031981,GO:0032026,GO:0032553,GO:0032555,GO:0032559,GO:0032868,GO:0032869,GO:0032870,GO:0034637,GO:0035690,GO:0036094,GO:0040008,GO:0042132,GO:0042221,GO:0042325,GO:0042326,GO:0042493,GO:0042578,GO:0042802,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043255,GO:0043292,GO:0043434,GO:0043467,GO:0043470,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044262,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044449,GO:0044464,GO:0045820,GO:0045892,GO:0045912,GO:0045926,GO:0045934,GO:0045936,GO:0045980,GO:0046351,GO:0046364,GO:0046578,GO:0046580,GO:0046872,GO:0048029,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050308,GO:0050789,GO:0050794,GO:0050896,GO:0051056,GO:0051058,GO:0051128,GO:0051171,GO:0051172,GO:0051174,GO:0051193,GO:0051195,GO:0051196,GO:0051198,GO:0051252,GO:0051253,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0051716,GO:0060255,GO:0062012,GO:0062014,GO:0065003,GO:0065007,GO:0070013,GO:0070887,GO:0071241,GO:0071248,GO:0071286,GO:0071310,GO:0071375,GO:0071417,GO:0071495,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0097159,GO:0097367,GO:0099080,GO:0099081,GO:0099512,GO:0140110,GO:1900371,GO:1900372,GO:1900542,GO:1900543,GO:1901135,GO:1901265,GO:1901363,GO:1901576,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902531,GO:1902532,GO:1902679,GO:1903506,GO:1903507,GO:1903578,GO:1903579,GO:2000112,GO:2000113,GO:2001141,GO:2001169,GO:2001170
Evalue2.15e-176
EggNOG OGsCOG0158@1|root,KOG1458@2759|Eukaryota
EC3.1.3.11
Descriptionfructose 1,6-bisphosphate 1-phosphatase activity
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2000Ggra2000Gracilaria gracilis GNS1m malegenetig00000925_pilon 117508..118587 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2000.t1.stop1Ggra2000.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000925_pilon 117508..117510 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2000.t1.CDS1Ggra2000.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000925_pilon 117508..118587 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2000.t1.exon1Ggra2000.t1.exon1Gracilaria gracilis GNS1m maleexontig00000925_pilon 117508..118587 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2000.t1.start1Ggra2000.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000925_pilon 118585..118587 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2000.t1Ggra2000.t1Gracilaria gracilis GNS1m malepolypeptidetig00000925_pilon 117508..118587 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2000.t1 ID=Ggra2000.t1|Name=Ggra2000.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=360bp
MQQLIEEQLNSGLKPPSGLEGLDSVTLTRFVLQGQRKHHEASGDLTLLLA
AVQLACKVTETCVRRAGIAKLYGLAGSGNVQGEDQKKLDVIANDTFKVNI
NSSEKCGVMVSEEDDLAIVCQKSSIDGSTGKYAIAFDPLDGSSNIDANVS
IGTIFSIFKLDEPEAIVDAETAAQAIMQPGREMVAAGYAMYGSATNLVIS
VGNGVHGFTLDPSLGEFVLTHPDIKIPARGKIYSVNEGNAKNWDKPTSEF
VQSLKYPEEGKSSYSLRYIGSMVADVHRTLFYGGVFIYPADKKSPTGKLR
LLYEAAPMAFLMEQAGGKATTGKQAILDVVPSSIHQRVPVYMGSADDIAD
FEALAAKYL*
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spliced messenger RNA

>Ggra2000.t1 ID=Ggra2000.t1|Name=Ggra2000.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1080bp|location=Sequence derived from alignment at tig00000925_pilon:117508..118587- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCAATTGATTGAGGAACAACTGAACTCCGGGCTCAAGCCCCCGTC
CGGCTTGGAGGGGCTTGACTCCGTTACGCTCACGCGCTTCGTGTTGCAGG
GACAGCGAAAGCACCATGAAGCTTCCGGCGATCTTACGCTGCTACTGGCG
GCAGTCCAGCTTGCGTGCAAGGTCACTGAGACTTGTGTGCGCCGTGCTGG
GATCGCCAAGCTCTATGGTTTGGCCGGGTCCGGCAACGTGCAAGGTGAGG
ATCAGAAGAAGCTTGATGTTATCGCGAACGACACCTTCAAGGTCAACATC
AACAGCTCAGAGAAGTGCGGTGTGATGGTTTCCGAAGAGGATGACCTTGC
TATCGTCTGCCAGAAGAGCAGCATCGACGGTTCGACCGGGAAATACGCCA
TAGCTTTCGATCCGTTAGATGGAAGCTCTAACATCGACGCCAACGTGTCT
ATTGGTACTATTTTCAGCATCTTCAAGTTGGATGAACCAGAGGCTATTGT
AGATGCGGAGACCGCTGCGCAAGCCATTATGCAGCCCGGTCGTGAGATGG
TCGCCGCTGGCTATGCCATGTATGGATCGGCCACCAACCTTGTCATTTCC
GTCGGAAATGGCGTTCACGGTTTTACGCTTGACCCGTCTTTGGGCGAGTT
TGTGCTCACACATCCTGACATCAAAATCCCCGCGCGGGGAAAGATTTACT
CTGTGAATGAAGGAAATGCTAAGAACTGGGATAAACCCACCTCCGAATTC
GTCCAGAGTCTCAAATACCCTGAAGAAGGCAAGTCTAGCTATTCGCTGCG
ATACATCGGTTCTATGGTTGCAGACGTGCACCGCACCCTTTTCTATGGGG
GCGTGTTCATCTACCCTGCTGACAAGAAGTCGCCGACTGGAAAGCTTCGT
CTTCTGTATGAGGCTGCACCCATGGCATTCTTGATGGAGCAAGCTGGAGG
AAAGGCTACCACAGGCAAGCAAGCGATCCTGGATGTCGTACCCTCTTCCA
TTCATCAGAGAGTGCCTGTATACATGGGCTCCGCTGACGATATAGCTGAC
TTTGAGGCCTTGGCTGCTAAATACCTGTAA
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protein sequence of Ggra2000.t1

>Ggra2000.t1 ID=Ggra2000.t1|Name=Ggra2000.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=360bp
MQQLIEEQLNSGLKPPSGLEGLDSVTLTRFVLQGQRKHHEASGDLTLLLA
AVQLACKVTETCVRRAGIAKLYGLAGSGNVQGEDQKKLDVIANDTFKVNI
NSSEKCGVMVSEEDDLAIVCQKSSIDGSTGKYAIAFDPLDGSSNIDANVS
IGTIFSIFKLDEPEAIVDAETAAQAIMQPGREMVAAGYAMYGSATNLVIS
VGNGVHGFTLDPSLGEFVLTHPDIKIPARGKIYSVNEGNAKNWDKPTSEF
VQSLKYPEEGKSSYSLRYIGSMVADVHRTLFYGGVFIYPADKKSPTGKLR
LLYEAAPMAFLMEQAGGKATTGKQAILDVVPSSIHQRVPVYMGSADDIAD
FEALAAKYL*
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mRNA from alignment at tig00000925_pilon:117508..118587-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2000.t1 ID=Ggra2000.t1|Name=Ggra2000.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1080bp|location=Sequence derived from alignment at tig00000925_pilon:117508..118587- (Gracilaria gracilis GNS1m male)
ATGCAGCAATTGATTGAGGAACAACTGAACTCCGGGCTCAAGCCCCCGTC
CGGCTTGGAGGGGCTTGACTCCGTTACGCTCACGCGCTTCGTGTTGCAGG
GACAGCGAAAGCACCATGAAGCTTCCGGCGATCTTACGCTGCTACTGGCG
GCAGTCCAGCTTGCGTGCAAGGTCACTGAGACTTGTGTGCGCCGTGCTGG
GATCGCCAAGCTCTATGGTTTGGCCGGGTCCGGCAACGTGCAAGGTGAGG
ATCAGAAGAAGCTTGATGTTATCGCGAACGACACCTTCAAGGTCAACATC
AACAGCTCAGAGAAGTGCGGTGTGATGGTTTCCGAAGAGGATGACCTTGC
TATCGTCTGCCAGAAGAGCAGCATCGACGGTTCGACCGGGAAATACGCCA
TAGCTTTCGATCCGTTAGATGGAAGCTCTAACATCGACGCCAACGTGTCT
ATTGGTACTATTTTCAGCATCTTCAAGTTGGATGAACCAGAGGCTATTGT
AGATGCGGAGACCGCTGCGCAAGCCATTATGCAGCCCGGTCGTGAGATGG
TCGCCGCTGGCTATGCCATGTATGGATCGGCCACCAACCTTGTCATTTCC
GTCGGAAATGGCGTTCACGGTTTTACGCTTGACCCGTCTTTGGGCGAGTT
TGTGCTCACACATCCTGACATCAAAATCCCCGCGCGGGGAAAGATTTACT
CTGTGAATGAAGGAAATGCTAAGAACTGGGATAAACCCACCTCCGAATTC
GTCCAGAGTCTCAAATACCCTGAAGAAGGCAAGTCTAGCTATTCGCTGCG
ATACATCGGTTCTATGGTTGCAGACGTGCACCGCACCCTTTTCTATGGGG
GCGTGTTCATCTACCCTGCTGACAAGAAGTCGCCGACTGGAAAGCTTCGT
CTTCTGTATGAGGCTGCACCCATGGCATTCTTGATGGAGCAAGCTGGAGG
AAAGGCTACCACAGGCAAGCAAGCGATCCTGGATGTCGTACCCTCTTCCA
TTCATCAGAGAGTGCCTGTATACATGGGCTCCGCTGACGATATAGCTGAC
TTTGAGGCCTTGGCTGCTAAATACCTGTAA
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Coding sequence (CDS) from alignment at tig00000925_pilon:117508..118587-

>Ggra2000.t1 ID=Ggra2000.t1|Name=Ggra2000.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1080bp|location=Sequence derived from alignment at tig00000925_pilon:117508..118587- (Gracilaria gracilis GNS1m male)
ATGCAGCAATTGATTGAGGAACAACTGAACTCCGGGCTCAAGCCCCCGTC
CGGCTTGGAGGGGCTTGACTCCGTTACGCTCACGCGCTTCGTGTTGCAGG
GACAGCGAAAGCACCATGAAGCTTCCGGCGATCTTACGCTGCTACTGGCG
GCAGTCCAGCTTGCGTGCAAGGTCACTGAGACTTGTGTGCGCCGTGCTGG
GATCGCCAAGCTCTATGGTTTGGCCGGGTCCGGCAACGTGCAAGGTGAGG
ATCAGAAGAAGCTTGATGTTATCGCGAACGACACCTTCAAGGTCAACATC
AACAGCTCAGAGAAGTGCGGTGTGATGGTTTCCGAAGAGGATGACCTTGC
TATCGTCTGCCAGAAGAGCAGCATCGACGGTTCGACCGGGAAATACGCCA
TAGCTTTCGATCCGTTAGATGGAAGCTCTAACATCGACGCCAACGTGTCT
ATTGGTACTATTTTCAGCATCTTCAAGTTGGATGAACCAGAGGCTATTGT
AGATGCGGAGACCGCTGCGCAAGCCATTATGCAGCCCGGTCGTGAGATGG
TCGCCGCTGGCTATGCCATGTATGGATCGGCCACCAACCTTGTCATTTCC
GTCGGAAATGGCGTTCACGGTTTTACGCTTGACCCGTCTTTGGGCGAGTT
TGTGCTCACACATCCTGACATCAAAATCCCCGCGCGGGGAAAGATTTACT
CTGTGAATGAAGGAAATGCTAAGAACTGGGATAAACCCACCTCCGAATTC
GTCCAGAGTCTCAAATACCCTGAAGAAGGCAAGTCTAGCTATTCGCTGCG
ATACATCGGTTCTATGGTTGCAGACGTGCACCGCACCCTTTTCTATGGGG
GCGTGTTCATCTACCCTGCTGACAAGAAGTCGCCGACTGGAAAGCTTCGT
CTTCTGTATGAGGCTGCACCCATGGCATTCTTGATGGAGCAAGCTGGAGG
AAAGGCTACCACAGGCAAGCAAGCGATCCTGGATGTCGTACCCTCTTCCA
TTCATCAGAGAGTGCCTGTATACATGGGCTCCGCTGACGATATAGCTGAC
TTTGAGGCCTTGGCTGCTAAATACCTGTAA
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