Ggra1993.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1993.t1
Unique NameGgra1993.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length534
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000925_piloncontigtig00000925_pilon:100255..101856 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog8081.XP_008422850.1
Preferred nameMAN1B1
PFAMsGlyco_hydro_47
Max annot lvl33208|Metazoa
KEGG koko:K01230
KEGG ReactionR05982,R06722
KEGG Pathwayko00510,ko00513,ko01100,ko04141,map00510,map00513,map01100,map04141
KEGG ModuleM00073,M00074
GOsGO:0000139,GO:0002252,GO:0002376,GO:0003674,GO:0003824,GO:0004553,GO:0004559,GO:0004571,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005975,GO:0006464,GO:0006491,GO:0006508,GO:0006511,GO:0006516,GO:0006517,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009100,GO:0009311,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0012505,GO:0015923,GO:0015924,GO:0016020,GO:0016021,GO:0016787,GO:0016798,GO:0019538,GO:0019941,GO:0030163,GO:0030433,GO:0031090,GO:0031224,GO:0031984,GO:0033554,GO:0034976,GO:0035010,GO:0035977,GO:0036211,GO:0036503,GO:0036507,GO:0036508,GO:0036509,GO:0036510,GO:0036511,GO:0036512,GO:0042175,GO:0042221,GO:0043161,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044322,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046872,GO:0050896,GO:0051603,GO:0051716,GO:0071704,GO:0097466,GO:0098588,GO:0098791,GO:0098827,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901700,GO:1904380,GO:1904382,GO:1904587
Evalue2e-75
EggNOG OGsKOG2431@1|root,KOG2431@2759|Eukaryota,38CSI@33154|Opisthokonta,3BAGZ@33208|Metazoa,3CR5J@33213|Bilateria,481ZG@7711|Chordata,48VGW@7742|Vertebrata,49SRG@7898|Actinopterygii
EC3.2.1.113
DescriptionMannosidase, alpha, class 1B, member 1
COG categoryG
CAZyGH47
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1993Ggra1993Gracilaria gracilis GNS1m malegenetig00000925_pilon 100255..101856 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1993.t1.start1Ggra1993.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000925_pilon 100255..100257 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1993.t1.CDS1Ggra1993.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000925_pilon 100255..101856 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1993.t1.exon1Ggra1993.t1.exon1Gracilaria gracilis GNS1m maleexontig00000925_pilon 100255..101856 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1993.t1.stop1Ggra1993.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000925_pilon 101854..101856 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1993.t1Ggra1993.t1Gracilaria gracilis GNS1m malepolypeptidetig00000925_pilon 100255..101856 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1993.t1 ID=Ggra1993.t1|Name=Ggra1993.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=534bp
MRLTAKHRERHPASVATAALSTAAVCVITACLFVHFVLNSAVSSPTTALS
PVILHAEFNTSFKLLQDDVRQVTRVLYGAYMRECMGQDEFEPLTGQCHHW
FNIGLSVLDSLDTLLIMKLKPEYEASREWAASSLRFDRVANTVSLFELVI
RAVGGMNSAYQLTGDQLWLNKSMQLADMLLLAFDSTRSKCPPSEVFIGDN
IKQRMLEHPLSTYSTASEVGTLQLEFRTLSHFSNDSKYKNAVDRCMNVMI
DSYPKNSLVPPLFDVSNGKFHGDRLTIGGSVDSLYEMLAKNWVFSGGQEP
TLRSLFERSVKAIMKTLSRSSDGNLYIGEMKRDRPSSFQKHMDHLACFFP
GTLAYAALHGLGGGVNGTGENDYLPIARRLTRSCFNMTRGVVSGLAGEIT
LFIDKPVPKQGHDVSYLRPEIVEALYYMDQIDPLAGDMYKQMGREMWQSI
RQWAQITDKEDGLLSTTYGLLENVEGSSHGGKLHSFVLAETLKYFYLLFD
ERSGDEAELPLTKWVFNTEAHAVRIRGGEGNRR*
back to top

spliced messenger RNA

>Ggra1993.t1 ID=Ggra1993.t1|Name=Ggra1993.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1602bp|location=Sequence derived from alignment at tig00000925_pilon:100255..101856+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCTTGACCGCTAAGCACCGAGAGCGACACCCTGCGTCTGTTGCCAC
TGCCGCGCTCTCCACCGCCGCTGTGTGCGTCATCACAGCCTGTCTTTTCG
TCCATTTCGTGCTCAACTCGGCCGTGTCTTCGCCCACTACTGCACTTTCT
CCAGTCATACTTCATGCCGAATTCAACACCAGCTTCAAGCTGTTGCAGGA
CGACGTGCGACAGGTCACCCGCGTGTTGTACGGCGCTTATATGCGCGAAT
GCATGGGGCAAGACGAGTTTGAGCCGCTTACCGGCCAGTGTCATCACTGG
TTTAACATCGGCCTTTCTGTGCTGGACAGCCTGGATACACTGTTGATCAT
GAAGTTGAAGCCAGAGTATGAGGCGTCGCGTGAGTGGGCTGCGTCTTCCC
TTCGATTCGACCGCGTTGCCAATACCGTTTCATTGTTCGAACTTGTCATT
CGTGCCGTAGGAGGTATGAACTCTGCGTATCAGCTTACTGGCGATCAACT
ATGGCTCAACAAGAGTATGCAATTAGCGGACATGTTGTTGCTTGCGTTTG
ATAGCACGCGCTCAAAATGCCCGCCTTCGGAGGTATTCATTGGTGATAAC
ATCAAGCAAAGAATGCTTGAACATCCGTTATCCACGTATTCTACCGCGTC
GGAGGTTGGCACTCTTCAGCTGGAATTCCGCACGCTGTCACACTTCTCAA
ACGATTCAAAGTACAAAAATGCTGTCGATCGCTGCATGAACGTCATGATA
GATTCTTATCCAAAGAACAGTCTTGTTCCGCCTCTATTCGACGTGTCCAA
CGGTAAGTTCCACGGCGACCGGCTCACCATCGGCGGCTCTGTGGATTCTT
TGTACGAAATGCTCGCGAAGAACTGGGTCTTTTCTGGGGGACAAGAGCCC
ACGCTTCGTTCACTATTCGAGCGATCCGTGAAGGCGATCATGAAGACGTT
GAGTCGAAGCAGTGACGGTAACTTGTATATCGGCGAGATGAAGCGAGATC
GACCATCGTCGTTTCAAAAACACATGGATCATTTGGCGTGCTTCTTCCCT
GGTACGCTTGCGTACGCGGCACTGCACGGGTTGGGCGGCGGGGTGAACGG
GACTGGTGAAAACGATTACCTTCCGATTGCACGCAGGCTGACGAGAAGCT
GTTTCAACATGACGCGCGGCGTGGTGAGCGGTCTGGCTGGGGAAATTACG
CTATTTATTGACAAGCCGGTTCCGAAGCAGGGGCACGACGTGAGTTATCT
GCGGCCGGAAATTGTGGAAGCGCTGTATTACATGGACCAAATCGATCCAT
TGGCGGGTGACATGTACAAGCAGATGGGGCGCGAAATGTGGCAGAGTATC
AGACAATGGGCGCAAATTACGGACAAGGAGGATGGGCTGTTGTCCACAAC
GTATGGGCTTTTGGAGAATGTTGAGGGAAGCAGTCACGGTGGAAAACTGC
ACTCGTTTGTTCTGGCAGAGACTCTCAAGTATTTCTATCTGCTATTCGAC
GAACGGTCGGGAGATGAGGCGGAGCTGCCTCTGACCAAGTGGGTGTTCAA
CACGGAGGCACATGCTGTGAGAATCAGAGGTGGCGAGGGTAACCGTAGAT
AG
back to top

protein sequence of Ggra1993.t1

>Ggra1993.t1 ID=Ggra1993.t1|Name=Ggra1993.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=534bp
MRLTAKHRERHPASVATAALSTAAVCVITACLFVHFVLNSAVSSPTTALS
PVILHAEFNTSFKLLQDDVRQVTRVLYGAYMRECMGQDEFEPLTGQCHHW
FNIGLSVLDSLDTLLIMKLKPEYEASREWAASSLRFDRVANTVSLFELVI
RAVGGMNSAYQLTGDQLWLNKSMQLADMLLLAFDSTRSKCPPSEVFIGDN
IKQRMLEHPLSTYSTASEVGTLQLEFRTLSHFSNDSKYKNAVDRCMNVMI
DSYPKNSLVPPLFDVSNGKFHGDRLTIGGSVDSLYEMLAKNWVFSGGQEP
TLRSLFERSVKAIMKTLSRSSDGNLYIGEMKRDRPSSFQKHMDHLACFFP
GTLAYAALHGLGGGVNGTGENDYLPIARRLTRSCFNMTRGVVSGLAGEIT
LFIDKPVPKQGHDVSYLRPEIVEALYYMDQIDPLAGDMYKQMGREMWQSI
RQWAQITDKEDGLLSTTYGLLENVEGSSHGGKLHSFVLAETLKYFYLLFD
ERSGDEAELPLTKWVFNTEAHAVRIRGGEGNRR*
back to top

mRNA from alignment at tig00000925_pilon:100255..101856+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1993.t1 ID=Ggra1993.t1|Name=Ggra1993.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1602bp|location=Sequence derived from alignment at tig00000925_pilon:100255..101856+ (Gracilaria gracilis GNS1m male)
ATGCGCTTGACCGCTAAGCACCGAGAGCGACACCCTGCGTCTGTTGCCAC
TGCCGCGCTCTCCACCGCCGCTGTGTGCGTCATCACAGCCTGTCTTTTCG
TCCATTTCGTGCTCAACTCGGCCGTGTCTTCGCCCACTACTGCACTTTCT
CCAGTCATACTTCATGCCGAATTCAACACCAGCTTCAAGCTGTTGCAGGA
CGACGTGCGACAGGTCACCCGCGTGTTGTACGGCGCTTATATGCGCGAAT
GCATGGGGCAAGACGAGTTTGAGCCGCTTACCGGCCAGTGTCATCACTGG
TTTAACATCGGCCTTTCTGTGCTGGACAGCCTGGATACACTGTTGATCAT
GAAGTTGAAGCCAGAGTATGAGGCGTCGCGTGAGTGGGCTGCGTCTTCCC
TTCGATTCGACCGCGTTGCCAATACCGTTTCATTGTTCGAACTTGTCATT
CGTGCCGTAGGAGGTATGAACTCTGCGTATCAGCTTACTGGCGATCAACT
ATGGCTCAACAAGAGTATGCAATTAGCGGACATGTTGTTGCTTGCGTTTG
ATAGCACGCGCTCAAAATGCCCGCCTTCGGAGGTATTCATTGGTGATAAC
ATCAAGCAAAGAATGCTTGAACATCCGTTATCCACGTATTCTACCGCGTC
GGAGGTTGGCACTCTTCAGCTGGAATTCCGCACGCTGTCACACTTCTCAA
ACGATTCAAAGTACAAAAATGCTGTCGATCGCTGCATGAACGTCATGATA
GATTCTTATCCAAAGAACAGTCTTGTTCCGCCTCTATTCGACGTGTCCAA
CGGTAAGTTCCACGGCGACCGGCTCACCATCGGCGGCTCTGTGGATTCTT
TGTACGAAATGCTCGCGAAGAACTGGGTCTTTTCTGGGGGACAAGAGCCC
ACGCTTCGTTCACTATTCGAGCGATCCGTGAAGGCGATCATGAAGACGTT
GAGTCGAAGCAGTGACGGTAACTTGTATATCGGCGAGATGAAGCGAGATC
GACCATCGTCGTTTCAAAAACACATGGATCATTTGGCGTGCTTCTTCCCT
GGTACGCTTGCGTACGCGGCACTGCACGGGTTGGGCGGCGGGGTGAACGG
GACTGGTGAAAACGATTACCTTCCGATTGCACGCAGGCTGACGAGAAGCT
GTTTCAACATGACGCGCGGCGTGGTGAGCGGTCTGGCTGGGGAAATTACG
CTATTTATTGACAAGCCGGTTCCGAAGCAGGGGCACGACGTGAGTTATCT
GCGGCCGGAAATTGTGGAAGCGCTGTATTACATGGACCAAATCGATCCAT
TGGCGGGTGACATGTACAAGCAGATGGGGCGCGAAATGTGGCAGAGTATC
AGACAATGGGCGCAAATTACGGACAAGGAGGATGGGCTGTTGTCCACAAC
GTATGGGCTTTTGGAGAATGTTGAGGGAAGCAGTCACGGTGGAAAACTGC
ACTCGTTTGTTCTGGCAGAGACTCTCAAGTATTTCTATCTGCTATTCGAC
GAACGGTCGGGAGATGAGGCGGAGCTGCCTCTGACCAAGTGGGTGTTCAA
CACGGAGGCACATGCTGTGAGAATCAGAGGTGGCGAGGGTAACCGTAGAT
AG
back to top

Coding sequence (CDS) from alignment at tig00000925_pilon:100255..101856+

>Ggra1993.t1 ID=Ggra1993.t1|Name=Ggra1993.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1602bp|location=Sequence derived from alignment at tig00000925_pilon:100255..101856+ (Gracilaria gracilis GNS1m male)
ATGCGCTTGACCGCTAAGCACCGAGAGCGACACCCTGCGTCTGTTGCCAC
TGCCGCGCTCTCCACCGCCGCTGTGTGCGTCATCACAGCCTGTCTTTTCG
TCCATTTCGTGCTCAACTCGGCCGTGTCTTCGCCCACTACTGCACTTTCT
CCAGTCATACTTCATGCCGAATTCAACACCAGCTTCAAGCTGTTGCAGGA
CGACGTGCGACAGGTCACCCGCGTGTTGTACGGCGCTTATATGCGCGAAT
GCATGGGGCAAGACGAGTTTGAGCCGCTTACCGGCCAGTGTCATCACTGG
TTTAACATCGGCCTTTCTGTGCTGGACAGCCTGGATACACTGTTGATCAT
GAAGTTGAAGCCAGAGTATGAGGCGTCGCGTGAGTGGGCTGCGTCTTCCC
TTCGATTCGACCGCGTTGCCAATACCGTTTCATTGTTCGAACTTGTCATT
CGTGCCGTAGGAGGTATGAACTCTGCGTATCAGCTTACTGGCGATCAACT
ATGGCTCAACAAGAGTATGCAATTAGCGGACATGTTGTTGCTTGCGTTTG
ATAGCACGCGCTCAAAATGCCCGCCTTCGGAGGTATTCATTGGTGATAAC
ATCAAGCAAAGAATGCTTGAACATCCGTTATCCACGTATTCTACCGCGTC
GGAGGTTGGCACTCTTCAGCTGGAATTCCGCACGCTGTCACACTTCTCAA
ACGATTCAAAGTACAAAAATGCTGTCGATCGCTGCATGAACGTCATGATA
GATTCTTATCCAAAGAACAGTCTTGTTCCGCCTCTATTCGACGTGTCCAA
CGGTAAGTTCCACGGCGACCGGCTCACCATCGGCGGCTCTGTGGATTCTT
TGTACGAAATGCTCGCGAAGAACTGGGTCTTTTCTGGGGGACAAGAGCCC
ACGCTTCGTTCACTATTCGAGCGATCCGTGAAGGCGATCATGAAGACGTT
GAGTCGAAGCAGTGACGGTAACTTGTATATCGGCGAGATGAAGCGAGATC
GACCATCGTCGTTTCAAAAACACATGGATCATTTGGCGTGCTTCTTCCCT
GGTACGCTTGCGTACGCGGCACTGCACGGGTTGGGCGGCGGGGTGAACGG
GACTGGTGAAAACGATTACCTTCCGATTGCACGCAGGCTGACGAGAAGCT
GTTTCAACATGACGCGCGGCGTGGTGAGCGGTCTGGCTGGGGAAATTACG
CTATTTATTGACAAGCCGGTTCCGAAGCAGGGGCACGACGTGAGTTATCT
GCGGCCGGAAATTGTGGAAGCGCTGTATTACATGGACCAAATCGATCCAT
TGGCGGGTGACATGTACAAGCAGATGGGGCGCGAAATGTGGCAGAGTATC
AGACAATGGGCGCAAATTACGGACAAGGAGGATGGGCTGTTGTCCACAAC
GTATGGGCTTTTGGAGAATGTTGAGGGAAGCAGTCACGGTGGAAAACTGC
ACTCGTTTGTTCTGGCAGAGACTCTCAAGTATTTCTATCTGCTATTCGAC
GAACGGTCGGGAGATGAGGCGGAGCTGCCTCTGACCAAGTGGGTGTTCAA
CACGGAGGCACATGCTGTGAGAATCAGAGGTGGCGAGGGTAACCGTAGAT
AG
back to top