Ggra1991.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1991.t1
Unique NameGgra1991.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length88
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000925_piloncontigtig00000925_pilon:96755..97018 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1991Ggra1991Gracilaria gracilis GNS1m malegenetig00000925_pilon 96755..97018 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1991.t1.start1Ggra1991.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000925_pilon 96755..96757 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1991.t1.CDS1Ggra1991.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000925_pilon 96755..97018 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1991.t1.exon1Ggra1991.t1.exon1Gracilaria gracilis GNS1m maleexontig00000925_pilon 96755..97018 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1991.t1.stop1Ggra1991.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000925_pilon 97016..97018 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1991.t1Ggra1991.t1Gracilaria gracilis GNS1m malepolypeptidetig00000925_pilon 96755..97018 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1991.t1 ID=Ggra1991.t1|Name=Ggra1991.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=88bp
MSAYWHAVPMLVSPLLREAAFWFALGVVVAAFMCAAVLLLAVSAPGIGST
AALVRAVGKSVDAVLCPERERERAHIRRQSRRSFDAL*
back to top

spliced messenger RNA

>Ggra1991.t1 ID=Ggra1991.t1|Name=Ggra1991.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=264bp|location=Sequence derived from alignment at tig00000925_pilon:96755..97018+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGCGTATTGGCATGCCGTGCCCATGTTGGTGTCTCCGTTGTTACG
AGAGGCTGCGTTCTGGTTTGCGTTGGGCGTGGTGGTGGCCGCCTTCATGT
GCGCCGCTGTGTTGCTGCTCGCTGTCAGTGCGCCCGGCATTGGAAGTACC
GCCGCCCTGGTTCGCGCCGTCGGCAAGAGCGTGGATGCCGTGCTGTGTCC
CGAGCGTGAACGCGAACGTGCACATATTCGGCGGCAATCTCGTCGCTCAT
TCGACGCGTTGTGA
back to top

protein sequence of Ggra1991.t1

>Ggra1991.t1 ID=Ggra1991.t1|Name=Ggra1991.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=88bp
MSAYWHAVPMLVSPLLREAAFWFALGVVVAAFMCAAVLLLAVSAPGIGST
AALVRAVGKSVDAVLCPERERERAHIRRQSRRSFDAL*
back to top

mRNA from alignment at tig00000925_pilon:96755..97018+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1991.t1 ID=Ggra1991.t1|Name=Ggra1991.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=264bp|location=Sequence derived from alignment at tig00000925_pilon:96755..97018+ (Gracilaria gracilis GNS1m male)
ATGAGCGCGTATTGGCATGCCGTGCCCATGTTGGTGTCTCCGTTGTTACG
AGAGGCTGCGTTCTGGTTTGCGTTGGGCGTGGTGGTGGCCGCCTTCATGT
GCGCCGCTGTGTTGCTGCTCGCTGTCAGTGCGCCCGGCATTGGAAGTACC
GCCGCCCTGGTTCGCGCCGTCGGCAAGAGCGTGGATGCCGTGCTGTGTCC
CGAGCGTGAACGCGAACGTGCACATATTCGGCGGCAATCTCGTCGCTCAT
TCGACGCGTTGTGA
back to top

Coding sequence (CDS) from alignment at tig00000925_pilon:96755..97018+

>Ggra1991.t1 ID=Ggra1991.t1|Name=Ggra1991.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=264bp|location=Sequence derived from alignment at tig00000925_pilon:96755..97018+ (Gracilaria gracilis GNS1m male)
ATGAGCGCGTATTGGCATGCCGTGCCCATGTTGGTGTCTCCGTTGTTACG
AGAGGCTGCGTTCTGGTTTGCGTTGGGCGTGGTGGTGGCCGCCTTCATGT
GCGCCGCTGTGTTGCTGCTCGCTGTCAGTGCGCCCGGCATTGGAAGTACC
GCCGCCCTGGTTCGCGCCGTCGGCAAGAGCGTGGATGCCGTGCTGTGTCC
CGAGCGTGAACGCGAACGTGCACATATTCGGCGGCAATCTCGTCGCTCAT
TCGACGCGTTGTGA
back to top