Ggra199.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra199.t1
Unique Name	Ggra199.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	217

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000960_pilon	contig	tig00000960_pilon:82167..82817 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7425.NV15607-PA
Preferred name	PSMD2
PFAMs	PC_rep
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K03028
KEGG Pathway	ko03050,ko05169,map03050,map05169
KEGG Module	M00341
GOs	GO:0000003,GO:0000502,GO:0001775,GO:0002119,GO:0002164,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005838,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0007275,GO:0008150,GO:0008152,GO:0008270,GO:0008540,GO:0009056,GO:0009057,GO:0009791,GO:0009987,GO:0010498,GO:0012505,GO:0016192,GO:0016579,GO:0019538,GO:0019941,GO:0022624,GO:0030141,GO:0030163,GO:0031410,GO:0031597,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0032501,GO:0032502,GO:0032940,GO:0032991,GO:0034515,GO:0034774,GO:0036211,GO:0036230,GO:0042119,GO:0043161,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044433,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046872,GO:0046903,GO:0046914,GO:0048856,GO:0050896,GO:0051179,GO:0051234,GO:0051603,GO:0060205,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0097708,GO:0099503,GO:0101002,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1904813,GO:1905368,GO:1905369
Evalue	3.73e-22
EggNOG OGs	COG5110@1\|root,KOG2005@2759\|Eukaryota,38ER5@33154\|Opisthokonta,3BEI6@33208\|Metazoa,3CRE4@33213\|Bilateria,41WVK@6656\|Arthropoda,3SIDU@50557\|Insecta,46GTP@7399\|Hymenoptera
Description	Proteasome/cyclosome repeat
COG category	O
BRITE	ko00000,ko00001,ko00002,ko03051

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra199	Ggra199	Gracilaria gracilis GNS1m male	gene	tig00000960_pilon 82167..82817 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra199.t1.start1	Ggra199.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000960_pilon 82167..82169 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra199.t1.CDS1	Ggra199.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000960_pilon 82167..82817 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra199.t1.exon1	Ggra199.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000960_pilon 82167..82817 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra199.t1.stop1	Ggra199.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000960_pilon 82815..82817 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra199.t1	Ggra199.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000960_pilon 82167..82817 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000960_pilon:82167..82817+
coding sequence from alignment at tig00000960_pilon:82167..82817+

mRNA sequence

>Ggra199.t1 ID=Ggra199.t1|Name=Ggra199.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=217bp
MVGTDSILGRITFVVFEVGAYCGFGDVRKCLKFLSICGERASIEETENTT
DSNHESTARTQAAAQTGPTGTNAAGNDLNANVYGAQEANLDAKPLSNAEK
ARIASSEQALAVMDLEMVAMGEERDAEMSIRALGYLPQGGDPVISKFVPL
AIGLLSVSDPKLTLTDMLSKFTHDSDIKVSHLAIIGQGQIGAGSSSKELQ
ANSSTGFTRRPSLGFR*

spliced messenger RNA

>Ggra199.t1 ID=Ggra199.t1|Name=Ggra199.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=651bp|location=Sequence derived from alignment at tig00000960_pilon:82167..82817+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGGAACTGATAGTATTCTTGGTCGAATCACTTTCGTAGTGTTTGA
AGTCGGTGCGTATTGCGGGTTTGGTGACGTTCGTAAGTGTCTGAAGTTTT
TGTCTATTTGTGGCGAGCGTGCTTCCATCGAAGAGACAGAAAATACCACA
GATTCCAACCATGAAAGTACTGCAAGGACTCAAGCTGCTGCGCAAACTGG
CCCAACTGGAACGAACGCAGCTGGAAATGATTTGAATGCGAACGTATATG
GAGCGCAAGAAGCAAACTTGGATGCAAAACCGTTAAGCAATGCTGAAAAA
GCTCGCATTGCTTCTTCTGAACAAGCGCTGGCTGTCATGGATCTGGAAAT
GGTAGCCATGGGCGAGGAACGTGATGCGGAGATGTCGATAAGGGCGCTTG
GCTATCTGCCGCAGGGCGGAGATCCTGTGATTAGCAAATTCGTTCCACTG
GCGATAGGTTTGTTGAGCGTTAGTGACCCCAAGTTAACGCTAACAGATAT
GTTGTCAAAGTTCACCCATGACTCTGATATAAAGGTTTCGCATTTGGCGA
TAATCGGGCAGGGTCAAATTGGTGCTGGTAGTAGTAGTAAAGAGTTGCAG
GCAAACTCCTCGACCGGATTTACTCGGAGACCCAGCCTTGGATTCAGATG
A

protein sequence of Ggra199.t1

>Ggra199.t1 ID=Ggra199.t1|Name=Ggra199.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=217bp
MVGTDSILGRITFVVFEVGAYCGFGDVRKCLKFLSICGERASIEETENTT
DSNHESTARTQAAAQTGPTGTNAAGNDLNANVYGAQEANLDAKPLSNAEK
ARIASSEQALAVMDLEMVAMGEERDAEMSIRALGYLPQGGDPVISKFVPL
AIGLLSVSDPKLTLTDMLSKFTHDSDIKVSHLAIIGQGQIGAGSSSKELQ
ANSSTGFTRRPSLGFR*

mRNA from alignment at tig00000960_pilon:82167..82817+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra199.t1 ID=Ggra199.t1|Name=Ggra199.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=651bp|location=Sequence derived from alignment at tig00000960_pilon:82167..82817+ (Gracilaria gracilis GNS1m male)
ATGGTGGGAACTGATAGTATTCTTGGTCGAATCACTTTCGTAGTGTTTGA
AGTCGGTGCGTATTGCGGGTTTGGTGACGTTCGTAAGTGTCTGAAGTTTT
TGTCTATTTGTGGCGAGCGTGCTTCCATCGAAGAGACAGAAAATACCACA
GATTCCAACCATGAAAGTACTGCAAGGACTCAAGCTGCTGCGCAAACTGG
CCCAACTGGAACGAACGCAGCTGGAAATGATTTGAATGCGAACGTATATG
GAGCGCAAGAAGCAAACTTGGATGCAAAACCGTTAAGCAATGCTGAAAAA
GCTCGCATTGCTTCTTCTGAACAAGCGCTGGCTGTCATGGATCTGGAAAT
GGTAGCCATGGGCGAGGAACGTGATGCGGAGATGTCGATAAGGGCGCTTG
GCTATCTGCCGCAGGGCGGAGATCCTGTGATTAGCAAATTCGTTCCACTG
GCGATAGGTTTGTTGAGCGTTAGTGACCCCAAGTTAACGCTAACAGATAT
GTTGTCAAAGTTCACCCATGACTCTGATATAAAGGTTTCGCATTTGGCGA
TAATCGGGCAGGGTCAAATTGGTGCTGGTAGTAGTAGTAAAGAGTTGCAG
GCAAACTCCTCGACCGGATTTACTCGGAGACCCAGCCTTGGATTCAGATG
A

Coding sequence (CDS) from alignment at tig00000960_pilon:82167..82817+

>Ggra199.t1 ID=Ggra199.t1|Name=Ggra199.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=651bp|location=Sequence derived from alignment at tig00000960_pilon:82167..82817+ (Gracilaria gracilis GNS1m male)
ATGGTGGGAACTGATAGTATTCTTGGTCGAATCACTTTCGTAGTGTTTGA
AGTCGGTGCGTATTGCGGGTTTGGTGACGTTCGTAAGTGTCTGAAGTTTT
TGTCTATTTGTGGCGAGCGTGCTTCCATCGAAGAGACAGAAAATACCACA
GATTCCAACCATGAAAGTACTGCAAGGACTCAAGCTGCTGCGCAAACTGG
CCCAACTGGAACGAACGCAGCTGGAAATGATTTGAATGCGAACGTATATG
GAGCGCAAGAAGCAAACTTGGATGCAAAACCGTTAAGCAATGCTGAAAAA
GCTCGCATTGCTTCTTCTGAACAAGCGCTGGCTGTCATGGATCTGGAAAT
GGTAGCCATGGGCGAGGAACGTGATGCGGAGATGTCGATAAGGGCGCTTG
GCTATCTGCCGCAGGGCGGAGATCCTGTGATTAGCAAATTCGTTCCACTG
GCGATAGGTTTGTTGAGCGTTAGTGACCCCAAGTTAACGCTAACAGATAT
GTTGTCAAAGTTCACCCATGACTCTGATATAAAGGTTTCGCATTTGGCGA
TAATCGGGCAGGGTCAAATTGGTGCTGGTAGTAGTAGTAAAGAGTTGCAG
GCAAACTCCTCGACCGGATTTACTCGGAGACCCAGCCTTGGATTCAGATG
A