Ggra1987.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1987.t1
Unique NameGgra1987.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length220
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000925_piloncontigtig00000925_pilon:87708..88449 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1185876.BN8_02160
PFAMsAcetyltransf_1,Acetyltransf_10
Max annot lvl976|Bacteroidetes
Evalue2.91e-20
EggNOG OGsCOG0454@1|root,COG0456@2|Bacteria,4NQSN@976|Bacteroidetes,47Q25@768503|Cytophagia
DescriptionAcetyltransferase (GNAT) domain
COG categoryK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1987Ggra1987Gracilaria gracilis GNS1m malegenetig00000925_pilon 87708..88449 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1987.t1Ggra1987.t1Gracilaria gracilis GNS1m malepolypeptidetig00000925_pilon 87708..88449 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1987.t1.stop1Ggra1987.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000925_pilon 87708..87710 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1987.t1.CDS1Ggra1987.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000925_pilon 87708..87893 -
Ggra1987.t1.CDS2Ggra1987.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000925_pilon 87976..88449 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1987.t1.exon1Ggra1987.t1.exon1Gracilaria gracilis GNS1m maleexontig00000925_pilon 87708..87893 -
Ggra1987.t1.exon2Ggra1987.t1.exon2Gracilaria gracilis GNS1m maleexontig00000925_pilon 87976..88449 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1987.t1.intron1Ggra1987.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000925_pilon 87894..87975 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1987.t1.start1Ggra1987.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000925_pilon 88447..88449 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1987.t1 ID=Ggra1987.t1|Name=Ggra1987.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=220bp
MVFDELVVLFSAHNKMTSSNEDAQTRIDDSMVFSVRKLQSENDKELSAIV
SLINRCYRTTRNWTNESSILDGLRVTSDSLAEEARLSDVFVVEEEQSKNL
IGCVKTGIVTETVVGPLPEPTGYIGLLSVADAFQSRGLGSKLMKFAEDHC
RRLGVKKVSMDVLGVRGDIIAWYERCGYRKTGHSVDSAPFFKTKGEKLLK
PTSFILLQKPLTYQNRENH*
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spliced messenger RNA

>Ggra1987.t1 ID=Ggra1987.t1|Name=Ggra1987.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=660bp|location=Sequence derived from alignment at tig00000925_pilon:87708..88449- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGTTCGACGAACTCGTTGTTCTGTTTTCTGCTCATAACAAGATGAC
GAGTTCTAATGAAGATGCTCAGACTCGCATTGATGATTCGATGGTATTTT
CCGTAAGAAAACTGCAATCTGAGAATGATAAAGAGCTTTCTGCTATCGTT
TCACTGATAAACCGGTGCTACAGAACAACGAGGAACTGGACCAACGAATC
CAGTATTTTGGATGGGCTACGCGTTACGTCTGATAGTTTAGCGGAAGAGG
CTAGGCTCAGTGACGTATTCGTGGTCGAAGAAGAGCAGTCTAAAAACTTA
ATTGGTTGCGTGAAAACCGGAATCGTCACGGAGACGGTGGTGGGGCCCTT
GCCAGAACCAACAGGTTATATCGGTTTACTTTCGGTTGCCGATGCTTTTC
AAAGCCGTGGACTGGGATCAAAGTTAATGAAATTCGCCGAGGATCACTGT
CGACGTCTGGGAGTTAAGAAAGTGTCAATGGACGTCCTTGGAGTTCGTGG
CGATATTATAGCTTGGTACGAAAGATGTGGATACAGGAAAACAGGTCATT
CAGTGGATAGCGCTCCATTCTTCAAAACCAAGGGTGAGAAATTGCTAAAG
CCCACAAGCTTTATCCTCCTTCAGAAACCGCTTACGTATCAGAACCGTGA
GAACCATTAG
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protein sequence of Ggra1987.t1

>Ggra1987.t1 ID=Ggra1987.t1|Name=Ggra1987.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=220bp
MVFDELVVLFSAHNKMTSSNEDAQTRIDDSMVFSVRKLQSENDKELSAIV
SLINRCYRTTRNWTNESSILDGLRVTSDSLAEEARLSDVFVVEEEQSKNL
IGCVKTGIVTETVVGPLPEPTGYIGLLSVADAFQSRGLGSKLMKFAEDHC
RRLGVKKVSMDVLGVRGDIIAWYERCGYRKTGHSVDSAPFFKTKGEKLLK
PTSFILLQKPLTYQNRENH*
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mRNA from alignment at tig00000925_pilon:87708..88449-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1987.t1 ID=Ggra1987.t1|Name=Ggra1987.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=742bp|location=Sequence derived from alignment at tig00000925_pilon:87708..88449- (Gracilaria gracilis GNS1m male)
ATGGTGTTCGACGAACTCGTTGTTCTGTTTTCTGCTCATAACAAGATGAC
GAGTTCTAATGAAGATGCTCAGACTCGCATTGATGATTCGATGGTATTTT
CCGTAAGAAAACTGCAATCTGAGAATGATAAAGAGCTTTCTGCTATCGTT
TCACTGATAAACCGGTGCTACAGAACAACGAGGAACTGGACCAACGAATC
CAGTATTTTGGATGGGCTACGCGTTACGTCTGATAGTTTAGCGGAAGAGG
CTAGGCTCAGTGACGTATTCGTGGTCGAAGAAGAGCAGTCTAAAAACTTA
ATTGGTTGCGTGAAAACCGGAATCGTCACGGAGACGGTGGTGGGGCCCTT
GCCAGAACCAACAGGTTATATCGGTTTACTTTCGGTTGCCGATGCTTTTC
AAAGCCGTGGACTGGGATCAAAGTTAATGAAATTCGCCGAGGATCACTGT
CGACGTCTGGGAGTTAAGAAAGTGGTAAGTTCTCTTTAAAACGCCAAGCG
AATATGTTTTTCGGAGCAGCAGCAAAAATAACCATGCAATGTTAACACCT
ATAAAGTCAATGGACGTCCTTGGAGTTCGTGGCGATATTATAGCTTGGTA
CGAAAGATGTGGATACAGGAAAACAGGTCATTCAGTGGATAGCGCTCCAT
TCTTCAAAACCAAGGGTGAGAAATTGCTAAAGCCCACAAGCTTTATCCTC
CTTCAGAAACCGCTTACGTATCAGAACCGTGAGAACCATTAG
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Coding sequence (CDS) from alignment at tig00000925_pilon:87708..88449-

>Ggra1987.t1 ID=Ggra1987.t1|Name=Ggra1987.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=660bp|location=Sequence derived from alignment at tig00000925_pilon:87708..88449- (Gracilaria gracilis GNS1m male)
ATGGTGTTCGACGAACTCGTTGTTCTGTTTTCTGCTCATAACAAGATGAC
GAGTTCTAATGAAGATGCTCAGACTCGCATTGATGATTCGATGGTATTTT
CCGTAAGAAAACTGCAATCTGAGAATGATAAAGAGCTTTCTGCTATCGTT
TCACTGATAAACCGGTGCTACAGAACAACGAGGAACTGGACCAACGAATC
CAGTATTTTGGATGGGCTACGCGTTACGTCTGATAGTTTAGCGGAAGAGG
CTAGGCTCAGTGACGTATTCGTGGTCGAAGAAGAGCAGTCTAAAAACTTA
ATTGGTTGCGTGAAAACCGGAATCGTCACGGAGACGGTGGTGGGGCCCTT
GCCAGAACCAACAGGTTATATCGGTTTACTTTCGGTTGCCGATGCTTTTC
AAAGCCGTGGACTGGGATCAAAGTTAATGAAATTCGCCGAGGATCACTGT
CGACGTCTGGGAGTTAAGAAAGTGTCAATGGACGTCCTTGGAGTTCGTGG
CGATATTATAGCTTGGTACGAAAGATGTGGATACAGGAAAACAGGTCATT
CAGTGGATAGCGCTCCATTCTTCAAAACCAAGGGTGAGAAATTGCTAAAG
CCCACAAGCTTTATCCTCCTTCAGAAACCGCTTACGTATCAGAACCGTGA
GAACCATTAG
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