Ggra1983.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1983.t1
Unique NameGgra1983.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length203
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000925_piloncontigtig00000925_pilon:81369..81977 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX49453
PFAMsFKBP_C
Max annot lvl2759|Eukaryota
GOsGO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005488,GO:0005527,GO:0005528,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006457,GO:0006464,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009987,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0061077,GO:0071704,GO:0097159,GO:0140096,GO:1901363,GO:1901564
Evalue5.08e-22
EggNOG OGsCOG0545@1|root,KOG0552@2759|Eukaryota
Descriptionhistone peptidyl-prolyl isomerization
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1983Ggra1983Gracilaria gracilis GNS1m malegenetig00000925_pilon 81369..81977 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1983.t1.stop1Ggra1983.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000925_pilon 81369..81371 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1983.t1.CDS1Ggra1983.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000925_pilon 81369..81977 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1983.t1.exon1Ggra1983.t1.exon1Gracilaria gracilis GNS1m maleexontig00000925_pilon 81369..81977 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1983.t1.start1Ggra1983.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000925_pilon 81975..81977 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1983.t1Ggra1983.t1Gracilaria gracilis GNS1m malepolypeptidetig00000925_pilon 81369..81977 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1983.t1 ID=Ggra1983.t1|Name=Ggra1983.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=203bp
MFLFVPQWLPAARTRRAAALTTMKDGRDSAPRVEIKRRDVLRFLALMTLQ
ASATNAAVRVADPSAGNNVTTTSTGLQYYDFILPEDDKPAVQPNSTVTVH
YTLGTTGARNGWRIDSTYDREPFTFRMGSREVIPGMEEGVLGMRVGGKRR
LLIPNTVGYRNANDRPVPKGFAEFQRFKNIYLNPDRAYKPDVVMDVSVLR
VR*
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spliced messenger RNA

>Ggra1983.t1 ID=Ggra1983.t1|Name=Ggra1983.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=609bp|location=Sequence derived from alignment at tig00000925_pilon:81369..81977- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTCTCTTCGTGCCTCAATGGTTGCCAGCTGCTCGAACGCGTCGGGC
GGCAGCATTGACCACAATGAAGGATGGAAGGGATTCTGCACCCAGAGTAG
AAATCAAACGAAGAGATGTTCTGCGTTTCTTGGCGTTAATGACGCTACAA
GCATCAGCAACAAATGCTGCCGTGCGTGTCGCCGATCCATCAGCAGGAAA
CAACGTTACAACAACTTCGACAGGTCTGCAATATTACGATTTCATATTAC
CAGAGGATGATAAACCAGCTGTACAACCTAATTCTACTGTCACAGTGCAC
TACACACTCGGAACCACTGGTGCGCGAAATGGATGGCGAATTGACAGTAC
TTACGATCGTGAACCGTTTACATTCCGTATGGGTAGTAGAGAAGTTATTC
CAGGGATGGAAGAAGGAGTGCTGGGGATGCGAGTAGGTGGCAAGAGACGC
TTGTTGATTCCGAACACCGTCGGCTATCGAAACGCTAACGACCGTCCTGT
ACCGAAAGGGTTTGCTGAATTCCAACGTTTCAAGAACATCTATCTAAATC
CTGATCGTGCCTACAAACCCGATGTAGTGATGGATGTATCTGTGCTAAGG
GTTCGCTGA
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protein sequence of Ggra1983.t1

>Ggra1983.t1 ID=Ggra1983.t1|Name=Ggra1983.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=203bp
MFLFVPQWLPAARTRRAAALTTMKDGRDSAPRVEIKRRDVLRFLALMTLQ
ASATNAAVRVADPSAGNNVTTTSTGLQYYDFILPEDDKPAVQPNSTVTVH
YTLGTTGARNGWRIDSTYDREPFTFRMGSREVIPGMEEGVLGMRVGGKRR
LLIPNTVGYRNANDRPVPKGFAEFQRFKNIYLNPDRAYKPDVVMDVSVLR
VR*
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mRNA from alignment at tig00000925_pilon:81369..81977-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1983.t1 ID=Ggra1983.t1|Name=Ggra1983.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=609bp|location=Sequence derived from alignment at tig00000925_pilon:81369..81977- (Gracilaria gracilis GNS1m male)
ATGTTTCTCTTCGTGCCTCAATGGTTGCCAGCTGCTCGAACGCGTCGGGC
GGCAGCATTGACCACAATGAAGGATGGAAGGGATTCTGCACCCAGAGTAG
AAATCAAACGAAGAGATGTTCTGCGTTTCTTGGCGTTAATGACGCTACAA
GCATCAGCAACAAATGCTGCCGTGCGTGTCGCCGATCCATCAGCAGGAAA
CAACGTTACAACAACTTCGACAGGTCTGCAATATTACGATTTCATATTAC
CAGAGGATGATAAACCAGCTGTACAACCTAATTCTACTGTCACAGTGCAC
TACACACTCGGAACCACTGGTGCGCGAAATGGATGGCGAATTGACAGTAC
TTACGATCGTGAACCGTTTACATTCCGTATGGGTAGTAGAGAAGTTATTC
CAGGGATGGAAGAAGGAGTGCTGGGGATGCGAGTAGGTGGCAAGAGACGC
TTGTTGATTCCGAACACCGTCGGCTATCGAAACGCTAACGACCGTCCTGT
ACCGAAAGGGTTTGCTGAATTCCAACGTTTCAAGAACATCTATCTAAATC
CTGATCGTGCCTACAAACCCGATGTAGTGATGGATGTATCTGTGCTAAGG
GTTCGCTGA
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Coding sequence (CDS) from alignment at tig00000925_pilon:81369..81977-

>Ggra1983.t1 ID=Ggra1983.t1|Name=Ggra1983.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=609bp|location=Sequence derived from alignment at tig00000925_pilon:81369..81977- (Gracilaria gracilis GNS1m male)
ATGTTTCTCTTCGTGCCTCAATGGTTGCCAGCTGCTCGAACGCGTCGGGC
GGCAGCATTGACCACAATGAAGGATGGAAGGGATTCTGCACCCAGAGTAG
AAATCAAACGAAGAGATGTTCTGCGTTTCTTGGCGTTAATGACGCTACAA
GCATCAGCAACAAATGCTGCCGTGCGTGTCGCCGATCCATCAGCAGGAAA
CAACGTTACAACAACTTCGACAGGTCTGCAATATTACGATTTCATATTAC
CAGAGGATGATAAACCAGCTGTACAACCTAATTCTACTGTCACAGTGCAC
TACACACTCGGAACCACTGGTGCGCGAAATGGATGGCGAATTGACAGTAC
TTACGATCGTGAACCGTTTACATTCCGTATGGGTAGTAGAGAAGTTATTC
CAGGGATGGAAGAAGGAGTGCTGGGGATGCGAGTAGGTGGCAAGAGACGC
TTGTTGATTCCGAACACCGTCGGCTATCGAAACGCTAACGACCGTCCTGT
ACCGAAAGGGTTTGCTGAATTCCAACGTTTCAAGAACATCTATCTAAATC
CTGATCGTGCCTACAAACCCGATGTAGTGATGGATGTATCTGTGCTAAGG
GTTCGCTGA
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