Ggra1982.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1982.t1
Unique Name	Ggra1982.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	380

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000925_pilon	contig	tig00000925_pilon:80056..81195 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1117315.AHCA01000002_gene3418
PFAMs	Pyr_redox_2
Max annot lvl	1236\|Gammaproteobacteria
Evalue	5.68e-33
EggNOG OGs	COG1252@1\|root,COG1252@2\|Bacteria,1RDYD@1224\|Proteobacteria,1SC19@1236\|Gammaproteobacteria
Description	Pyridine nucleotide-disulphide oxidoreductase
COG category	C

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1982	Ggra1982	Gracilaria gracilis GNS1m male	gene	tig00000925_pilon 80056..81195 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1982.t1.start1	Ggra1982.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000925_pilon 80056..80058 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1982.t1.CDS1	Ggra1982.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000925_pilon 80056..81195 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1982.t1.exon1	Ggra1982.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000925_pilon 80056..81195 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1982.t1.stop1	Ggra1982.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000925_pilon 81193..81195 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1982.t1	Ggra1982.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000925_pilon 80056..81195 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000925_pilon:80056..81195+
coding sequence from alignment at tig00000925_pilon:80056..81195+

mRNA sequence

>Ggra1982.t1 ID=Ggra1982.t1|Name=Ggra1982.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=380bp
MHIVVIGGGAAGLSALNTLHKKVATDTNISITLIEPKSFVEAPWATIRTM
FDLNMAKNNVIPISTFLKKHPGIKHVKANVKTIEKLAVVLDDSQRLEFDV
CLVAVGASKVIEVLNPMNSASVSESEQQSVKARLDALEASGKSLLAAKSV
LVVGGGAIGTEIASDIAAYSALQRGPKPSVTLVHSGDHLVPEFNKNSAAK
ILRMLQNLGVTVYLKDKAIEKDGKWVLNSTGQQVEADTVIKATGIFPNNN
FMKTNFSSALDEKGWITVDDNFRVPGTDGRIFAAGDCCNALPNTGVNAMG
NKAVLATNIFKTIQALQEKKSLDSVSKLATKVAGPPLFIVTAGPNKGVAQ
TPLGALTWGLTGLKNKTMFLFRLKGEIGV*

spliced messenger RNA

>Ggra1982.t1 ID=Ggra1982.t1|Name=Ggra1982.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1140bp|location=Sequence derived from alignment at tig00000925_pilon:80056..81195+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATATCGTCGTCATAGGTGGTGGAGCGGCAGGTCTTTCTGCCCTCAA
CACGCTCCACAAAAAAGTTGCTACTGATACCAACATTTCAATTACCCTCA
TTGAGCCCAAATCTTTTGTAGAAGCACCATGGGCTACCATCCGCACCATG
TTCGACCTTAACATGGCTAAGAACAATGTGATTCCAATCTCCACCTTTCT
CAAGAAGCATCCCGGTATCAAACACGTAAAGGCCAACGTGAAAACCATTG
AGAAACTGGCCGTTGTGCTTGACGACTCGCAACGGCTTGAATTCGATGTC
TGCCTGGTTGCCGTGGGTGCTTCCAAGGTTATCGAAGTCCTCAACCCTAT
GAACTCCGCCTCGGTTTCAGAGTCTGAGCAACAGAGTGTCAAAGCGAGAT
TGGATGCCCTAGAAGCTTCGGGCAAAAGCTTGCTTGCTGCCAAGTCCGTG
TTGGTAGTGGGAGGAGGCGCTATCGGAACTGAAATTGCGTCGGATATTGC
TGCGTACAGCGCTCTTCAACGTGGACCCAAACCATCTGTTACCCTTGTTC
ATTCGGGAGACCACCTTGTTCCAGAATTCAACAAGAACAGCGCTGCGAAG
ATTCTCCGAATGCTGCAAAACCTTGGAGTGACTGTTTATCTCAAAGACAA
AGCTATTGAGAAGGATGGGAAGTGGGTCCTAAATTCCACAGGTCAGCAAG
TTGAGGCTGATACAGTTATCAAAGCCACTGGAATTTTCCCTAACAACAAC
TTCATGAAGACGAATTTCTCGAGCGCGCTCGATGAAAAGGGGTGGATCAC
TGTGGACGATAACTTCAGAGTGCCTGGCACCGATGGAAGAATTTTTGCGG
CAGGCGATTGCTGTAACGCCTTACCCAATACTGGTGTCAATGCTATGGGT
AACAAAGCTGTTCTCGCCACCAACATCTTCAAGACAATTCAAGCGCTCCA
AGAGAAGAAGAGTCTCGATTCAGTGAGCAAGTTAGCTACCAAGGTTGCAG
GTCCTCCATTGTTCATTGTTACGGCAGGTCCGAATAAGGGAGTGGCTCAA
ACACCACTTGGGGCTCTTACATGGGGACTCACTGGCCTTAAGAATAAGAC
CATGTTCCTCTTCCGTCTAAAGGGTGAGATCGGTGTTTGA

protein sequence of Ggra1982.t1

>Ggra1982.t1 ID=Ggra1982.t1|Name=Ggra1982.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=380bp
MHIVVIGGGAAGLSALNTLHKKVATDTNISITLIEPKSFVEAPWATIRTM
FDLNMAKNNVIPISTFLKKHPGIKHVKANVKTIEKLAVVLDDSQRLEFDV
CLVAVGASKVIEVLNPMNSASVSESEQQSVKARLDALEASGKSLLAAKSV
LVVGGGAIGTEIASDIAAYSALQRGPKPSVTLVHSGDHLVPEFNKNSAAK
ILRMLQNLGVTVYLKDKAIEKDGKWVLNSTGQQVEADTVIKATGIFPNNN
FMKTNFSSALDEKGWITVDDNFRVPGTDGRIFAAGDCCNALPNTGVNAMG
NKAVLATNIFKTIQALQEKKSLDSVSKLATKVAGPPLFIVTAGPNKGVAQ
TPLGALTWGLTGLKNKTMFLFRLKGEIGV*

mRNA from alignment at tig00000925_pilon:80056..81195+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1982.t1 ID=Ggra1982.t1|Name=Ggra1982.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1140bp|location=Sequence derived from alignment at tig00000925_pilon:80056..81195+ (Gracilaria gracilis GNS1m male)
ATGCATATCGTCGTCATAGGTGGTGGAGCGGCAGGTCTTTCTGCCCTCAA
CACGCTCCACAAAAAAGTTGCTACTGATACCAACATTTCAATTACCCTCA
TTGAGCCCAAATCTTTTGTAGAAGCACCATGGGCTACCATCCGCACCATG
TTCGACCTTAACATGGCTAAGAACAATGTGATTCCAATCTCCACCTTTCT
CAAGAAGCATCCCGGTATCAAACACGTAAAGGCCAACGTGAAAACCATTG
AGAAACTGGCCGTTGTGCTTGACGACTCGCAACGGCTTGAATTCGATGTC
TGCCTGGTTGCCGTGGGTGCTTCCAAGGTTATCGAAGTCCTCAACCCTAT
GAACTCCGCCTCGGTTTCAGAGTCTGAGCAACAGAGTGTCAAAGCGAGAT
TGGATGCCCTAGAAGCTTCGGGCAAAAGCTTGCTTGCTGCCAAGTCCGTG
TTGGTAGTGGGAGGAGGCGCTATCGGAACTGAAATTGCGTCGGATATTGC
TGCGTACAGCGCTCTTCAACGTGGACCCAAACCATCTGTTACCCTTGTTC
ATTCGGGAGACCACCTTGTTCCAGAATTCAACAAGAACAGCGCTGCGAAG
ATTCTCCGAATGCTGCAAAACCTTGGAGTGACTGTTTATCTCAAAGACAA
AGCTATTGAGAAGGATGGGAAGTGGGTCCTAAATTCCACAGGTCAGCAAG
TTGAGGCTGATACAGTTATCAAAGCCACTGGAATTTTCCCTAACAACAAC
TTCATGAAGACGAATTTCTCGAGCGCGCTCGATGAAAAGGGGTGGATCAC
TGTGGACGATAACTTCAGAGTGCCTGGCACCGATGGAAGAATTTTTGCGG
CAGGCGATTGCTGTAACGCCTTACCCAATACTGGTGTCAATGCTATGGGT
AACAAAGCTGTTCTCGCCACCAACATCTTCAAGACAATTCAAGCGCTCCA
AGAGAAGAAGAGTCTCGATTCAGTGAGCAAGTTAGCTACCAAGGTTGCAG
GTCCTCCATTGTTCATTGTTACGGCAGGTCCGAATAAGGGAGTGGCTCAA
ACACCACTTGGGGCTCTTACATGGGGACTCACTGGCCTTAAGAATAAGAC
CATGTTCCTCTTCCGTCTAAAGGGTGAGATCGGTGTTTGA

Coding sequence (CDS) from alignment at tig00000925_pilon:80056..81195+

>Ggra1982.t1 ID=Ggra1982.t1|Name=Ggra1982.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1140bp|location=Sequence derived from alignment at tig00000925_pilon:80056..81195+ (Gracilaria gracilis GNS1m male)
ATGCATATCGTCGTCATAGGTGGTGGAGCGGCAGGTCTTTCTGCCCTCAA
CACGCTCCACAAAAAAGTTGCTACTGATACCAACATTTCAATTACCCTCA
TTGAGCCCAAATCTTTTGTAGAAGCACCATGGGCTACCATCCGCACCATG
TTCGACCTTAACATGGCTAAGAACAATGTGATTCCAATCTCCACCTTTCT
CAAGAAGCATCCCGGTATCAAACACGTAAAGGCCAACGTGAAAACCATTG
AGAAACTGGCCGTTGTGCTTGACGACTCGCAACGGCTTGAATTCGATGTC
TGCCTGGTTGCCGTGGGTGCTTCCAAGGTTATCGAAGTCCTCAACCCTAT
GAACTCCGCCTCGGTTTCAGAGTCTGAGCAACAGAGTGTCAAAGCGAGAT
TGGATGCCCTAGAAGCTTCGGGCAAAAGCTTGCTTGCTGCCAAGTCCGTG
TTGGTAGTGGGAGGAGGCGCTATCGGAACTGAAATTGCGTCGGATATTGC
TGCGTACAGCGCTCTTCAACGTGGACCCAAACCATCTGTTACCCTTGTTC
ATTCGGGAGACCACCTTGTTCCAGAATTCAACAAGAACAGCGCTGCGAAG
ATTCTCCGAATGCTGCAAAACCTTGGAGTGACTGTTTATCTCAAAGACAA
AGCTATTGAGAAGGATGGGAAGTGGGTCCTAAATTCCACAGGTCAGCAAG
TTGAGGCTGATACAGTTATCAAAGCCACTGGAATTTTCCCTAACAACAAC
TTCATGAAGACGAATTTCTCGAGCGCGCTCGATGAAAAGGGGTGGATCAC
TGTGGACGATAACTTCAGAGTGCCTGGCACCGATGGAAGAATTTTTGCGG
CAGGCGATTGCTGTAACGCCTTACCCAATACTGGTGTCAATGCTATGGGT
AACAAAGCTGTTCTCGCCACCAACATCTTCAAGACAATTCAAGCGCTCCA
AGAGAAGAAGAGTCTCGATTCAGTGAGCAAGTTAGCTACCAAGGTTGCAG
GTCCTCCATTGTTCATTGTTACGGCAGGTCCGAATAAGGGAGTGGCTCAA
ACACCACTTGGGGCTCTTACATGGGGACTCACTGGCCTTAAGAATAAGAC
CATGTTCCTCTTCCGTCTAAAGGGTGAGATCGGTGTTTGA