Ggra198.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra198.t1
Unique NameGgra198.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length667
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000960_piloncontigtig00000960_pilon:40959..43096 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra198Ggra198Gracilaria gracilis GNS1m malegenetig00000960_pilon 40959..43096 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra198.t1Ggra198.t1Gracilaria gracilis GNS1m malepolypeptidetig00000960_pilon 40959..43096 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra198.t1.stop1Ggra198.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000960_pilon 40959..40961 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra198.t1.CDS1Ggra198.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000960_pilon 40959..42262 -
Ggra198.t1.CDS2Ggra198.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000960_pilon 42400..43096 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra198.t1.exon1Ggra198.t1.exon1Gracilaria gracilis GNS1m maleexontig00000960_pilon 40959..42262 -
Ggra198.t1.exon2Ggra198.t1.exon2Gracilaria gracilis GNS1m maleexontig00000960_pilon 42400..43096 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra198.t1.intron1Ggra198.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000960_pilon 42263..42399 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra198.t1.start1Ggra198.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000960_pilon 43094..43096 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra198.t1 ID=Ggra198.t1|Name=Ggra198.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=667bp
MVLSWRRVRSWGPSTTPSAPPNEVPRLSAPLPPSSVRALSGGVIGAGSTT
DTTASGNEAQQSAAPPPAPLPSRLQERQRPRGQGHQPPQGAQAVQFPQSL
LLAEPAQTSQSHEAVQLDECEDDDVVEVASVTRKSVVGVDEDDDEVVYVE
RHEEAPVSDLDSVAAKLGVRLVYLSPFDGTLCPMAIEDIIEPKDSLRPLR
QGYVRELIDVFKRSGLNVALSMISVAVRAMPDALLVTVGKRINGSPLVPF
DIYGIGTSLNMASGTVGKTSLMDFLHCCVSHARALIRQRTVVQASLTMEV
LASVVLRTQALGHIMERQMQRYATVLLRILNSEKCYKKVEALFKKMPSVG
INHMSSLSLVEVDDCGFCLALDCVAKCSDQHLSGVCGMKIAFASFRMRFY
KTGSDLYGMVVRASKSADREVEEWLDSAISVTAQSKVTIRTIILNAEGGK
RRGWNTNSALKKLLKFVGKILGEAFLQPESVRMEGTVVQASTDAALMACR
PAKANTTGAVALTTKDADPDNVVIVGRGRSRTSTKKCFFASKADDDSTGD
FQLSLLRNKPLKTGVRSGIGEVKRPTFSESSRLGKEGIGEKGDRKEVRSV
DSASFLSRFRKLNAMEQAEVIERLSQVFVEEDKDVRNPAMRLLDAGNHKF
DDKQPELPKLGYQSYV*
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spliced messenger RNA

>Ggra198.t1 ID=Ggra198.t1|Name=Ggra198.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2001bp|location=Sequence derived from alignment at tig00000960_pilon:40959..43096- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCTGTCATGGCGACGAGTGAGGTCGTGGGGTCCAAGCACTACACC
ATCCGCTCCGCCGAATGAAGTGCCGAGGCTGTCCGCGCCATTGCCACCAT
CTTCTGTGCGGGCGCTTTCTGGGGGTGTAATAGGAGCTGGCAGTACGACA
GATACAACTGCATCCGGGAATGAAGCGCAACAGAGTGCGGCACCACCACC
GGCACCGCTGCCGTCACGGCTGCAAGAGCGCCAGCGGCCGAGAGGGCAGG
GCCACCAGCCTCCCCAGGGCGCACAGGCGGTACAGTTTCCACAGTCTCTA
TTGCTGGCGGAGCCTGCACAGACGTCACAGTCACATGAAGCGGTCCAGTT
GGATGAATGTGAGGACGATGATGTTGTAGAAGTTGCGAGTGTGACACGCA
AATCGGTCGTGGGTGTAGACGAGGACGATGATGAAGTTGTGTACGTTGAG
AGGCATGAAGAAGCACCGGTATCTGATTTGGATTCTGTCGCCGCGAAACT
GGGGGTGAGGTTAGTGTACCTGTCGCCATTCGATGGTACACTGTGCCCAA
TGGCGATAGAAGACATCATTGAGCCGAAGGACTCGCTGCGTCCGTTGCGC
CAGGGCTACGTGCGAGAGCTTATAGATGTGTTCAAGCGCTCTGGCTTGAA
CGTAGCACTAAGTATGATCTCGGTTGCTGTTCGGGCAATGCCGGACGCGT
TACTGGTGACGGTCGGGAAGCGGATCAATGGGAGTCCGCTGGTTCCATTC
GACATATACGGTATAGGTACGTCGCTGAACATGGCTTCGGGGACCGTGGG
GAAGACGTCATTGATGGACTTCTTGCACTGTTGTGTGTCACACGCCAGAG
CCCTCATCCGCCAACGCACTGTCGTGCAAGCATCATTGACAATGGAAGTA
CTGGCTTCGGTGGTATTGCGCACACAGGCGCTAGGTCACATAATGGAGCG
ACAGATGCAACGGTACGCGACGGTGTTGTTGAGGATTTTGAACAGTGAGA
AGTGCTACAAGAAGGTTGAAGCGCTGTTTAAGAAGATGCCTTCGGTTGGA
ATCAACCACATGTCGAGCTTATCTCTCGTTGAGGTTGACGATTGTGGTTT
TTGTCTTGCCCTGGACTGTGTGGCAAAGTGTAGTGATCAGCACCTCTCTG
GAGTTTGTGGAATGAAAATCGCATTCGCTTCCTTTCGTATGCGCTTTTAC
AAGACGGGGTCCGATCTGTACGGCATGGTAGTACGGGCTTCAAAAAGCGC
TGACCGGGAAGTAGAGGAATGGTTGGACAGTGCGATTTCCGTCACGGCTC
AGTCGAAGGTGACGATCCGCACCATAATCCTTAATGCCGAAGGCGGGAAA
AGAAGGGGTTGGAATACGAACTCTGCGTTGAAGAAGCTGCTCAAGTTCGT
TGGGAAAATCCTGGGTGAGGCGTTTTTGCAGCCGGAAAGCGTTCGTATGG
AAGGCACTGTTGTGCAGGCCAGTACGGACGCTGCCCTTATGGCCTGTCGC
CCTGCGAAAGCTAATACGACGGGTGCTGTTGCTTTGACCACCAAGGACGC
TGATCCCGATAATGTCGTAATTGTCGGGAGGGGGAGAAGCAGGACAAGTA
CGAAGAAGTGTTTTTTCGCTTCTAAAGCCGACGATGATTCAACTGGGGAT
TTTCAGCTGTCATTGTTGCGTAATAAGCCCCTCAAAACGGGTGTGAGAAG
TGGTATAGGAGAAGTGAAGAGGCCTACCTTCTCCGAAAGTAGCCGTCTTG
GAAAGGAAGGAATTGGAGAAAAAGGGGATAGGAAAGAGGTAAGGTCGGTA
GATTCAGCCTCCTTTTTAAGCCGCTTCCGCAAGCTTAACGCCATGGAGCA
GGCCGAAGTGATTGAGCGGCTGTCCCAAGTGTTTGTAGAGGAGGATAAGG
ATGTGCGAAACCCGGCAATGCGTTTATTGGACGCTGGGAATCACAAGTTC
GATGACAAACAGCCGGAGTTGCCCAAGCTTGGCTATCAGTCGTACGTGTG
A
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protein sequence of Ggra198.t1

>Ggra198.t1 ID=Ggra198.t1|Name=Ggra198.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=667bp
MVLSWRRVRSWGPSTTPSAPPNEVPRLSAPLPPSSVRALSGGVIGAGSTT
DTTASGNEAQQSAAPPPAPLPSRLQERQRPRGQGHQPPQGAQAVQFPQSL
LLAEPAQTSQSHEAVQLDECEDDDVVEVASVTRKSVVGVDEDDDEVVYVE
RHEEAPVSDLDSVAAKLGVRLVYLSPFDGTLCPMAIEDIIEPKDSLRPLR
QGYVRELIDVFKRSGLNVALSMISVAVRAMPDALLVTVGKRINGSPLVPF
DIYGIGTSLNMASGTVGKTSLMDFLHCCVSHARALIRQRTVVQASLTMEV
LASVVLRTQALGHIMERQMQRYATVLLRILNSEKCYKKVEALFKKMPSVG
INHMSSLSLVEVDDCGFCLALDCVAKCSDQHLSGVCGMKIAFASFRMRFY
KTGSDLYGMVVRASKSADREVEEWLDSAISVTAQSKVTIRTIILNAEGGK
RRGWNTNSALKKLLKFVGKILGEAFLQPESVRMEGTVVQASTDAALMACR
PAKANTTGAVALTTKDADPDNVVIVGRGRSRTSTKKCFFASKADDDSTGD
FQLSLLRNKPLKTGVRSGIGEVKRPTFSESSRLGKEGIGEKGDRKEVRSV
DSASFLSRFRKLNAMEQAEVIERLSQVFVEEDKDVRNPAMRLLDAGNHKF
DDKQPELPKLGYQSYV*
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mRNA from alignment at tig00000960_pilon:40959..43096-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra198.t1 ID=Ggra198.t1|Name=Ggra198.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2138bp|location=Sequence derived from alignment at tig00000960_pilon:40959..43096- (Gracilaria gracilis GNS1m male)
ATGGTGCTGTCATGGCGACGAGTGAGGTCGTGGGGTCCAAGCACTACACC
ATCCGCTCCGCCGAATGAAGTGCCGAGGCTGTCCGCGCCATTGCCACCAT
CTTCTGTGCGGGCGCTTTCTGGGGGTGTAATAGGAGCTGGCAGTACGACA
GATACAACTGCATCCGGGAATGAAGCGCAACAGAGTGCGGCACCACCACC
GGCACCGCTGCCGTCACGGCTGCAAGAGCGCCAGCGGCCGAGAGGGCAGG
GCCACCAGCCTCCCCAGGGCGCACAGGCGGTACAGTTTCCACAGTCTCTA
TTGCTGGCGGAGCCTGCACAGACGTCACAGTCACATGAAGCGGTCCAGTT
GGATGAATGTGAGGACGATGATGTTGTAGAAGTTGCGAGTGTGACACGCA
AATCGGTCGTGGGTGTAGACGAGGACGATGATGAAGTTGTGTACGTTGAG
AGGCATGAAGAAGCACCGGTATCTGATTTGGATTCTGTCGCCGCGAAACT
GGGGGTGAGGTTAGTGTACCTGTCGCCATTCGATGGTACACTGTGCCCAA
TGGCGATAGAAGACATCATTGAGCCGAAGGACTCGCTGCGTCCGTTGCGC
CAGGGCTACGTGCGAGAGCTTATAGATGTGTTCAAGCGCTCTGGCTTGAA
CGTAGCACTAAGTATGATCTCGGTTGCTGTTCGGGCAATGCCGGACGGTA
GGCTTCCACCGAATTGCATTACGGATGGCGGTTTAGGATGGGGGTGAAGT
GCTGGCTGATTGATGGTCGCCATTCTTTGATGGTGTTGAAGAAGCTCGCC
GAAAAGTCTACGGAATGTAATGAACATTGCAAAGCGTTACTGGTGACGGT
CGGGAAGCGGATCAATGGGAGTCCGCTGGTTCCATTCGACATATACGGTA
TAGGTACGTCGCTGAACATGGCTTCGGGGACCGTGGGGAAGACGTCATTG
ATGGACTTCTTGCACTGTTGTGTGTCACACGCCAGAGCCCTCATCCGCCA
ACGCACTGTCGTGCAAGCATCATTGACAATGGAAGTACTGGCTTCGGTGG
TATTGCGCACACAGGCGCTAGGTCACATAATGGAGCGACAGATGCAACGG
TACGCGACGGTGTTGTTGAGGATTTTGAACAGTGAGAAGTGCTACAAGAA
GGTTGAAGCGCTGTTTAAGAAGATGCCTTCGGTTGGAATCAACCACATGT
CGAGCTTATCTCTCGTTGAGGTTGACGATTGTGGTTTTTGTCTTGCCCTG
GACTGTGTGGCAAAGTGTAGTGATCAGCACCTCTCTGGAGTTTGTGGAAT
GAAAATCGCATTCGCTTCCTTTCGTATGCGCTTTTACAAGACGGGGTCCG
ATCTGTACGGCATGGTAGTACGGGCTTCAAAAAGCGCTGACCGGGAAGTA
GAGGAATGGTTGGACAGTGCGATTTCCGTCACGGCTCAGTCGAAGGTGAC
GATCCGCACCATAATCCTTAATGCCGAAGGCGGGAAAAGAAGGGGTTGGA
ATACGAACTCTGCGTTGAAGAAGCTGCTCAAGTTCGTTGGGAAAATCCTG
GGTGAGGCGTTTTTGCAGCCGGAAAGCGTTCGTATGGAAGGCACTGTTGT
GCAGGCCAGTACGGACGCTGCCCTTATGGCCTGTCGCCCTGCGAAAGCTA
ATACGACGGGTGCTGTTGCTTTGACCACCAAGGACGCTGATCCCGATAAT
GTCGTAATTGTCGGGAGGGGGAGAAGCAGGACAAGTACGAAGAAGTGTTT
TTTCGCTTCTAAAGCCGACGATGATTCAACTGGGGATTTTCAGCTGTCAT
TGTTGCGTAATAAGCCCCTCAAAACGGGTGTGAGAAGTGGTATAGGAGAA
GTGAAGAGGCCTACCTTCTCCGAAAGTAGCCGTCTTGGAAAGGAAGGAAT
TGGAGAAAAAGGGGATAGGAAAGAGGTAAGGTCGGTAGATTCAGCCTCCT
TTTTAAGCCGCTTCCGCAAGCTTAACGCCATGGAGCAGGCCGAAGTGATT
GAGCGGCTGTCCCAAGTGTTTGTAGAGGAGGATAAGGATGTGCGAAACCC
GGCAATGCGTTTATTGGACGCTGGGAATCACAAGTTCGATGACAAACAGC
CGGAGTTGCCCAAGCTTGGCTATCAGTCGTACGTGTGA
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Coding sequence (CDS) from alignment at tig00000960_pilon:40959..43096-

>Ggra198.t1 ID=Ggra198.t1|Name=Ggra198.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2001bp|location=Sequence derived from alignment at tig00000960_pilon:40959..43096- (Gracilaria gracilis GNS1m male)
ATGGTGCTGTCATGGCGACGAGTGAGGTCGTGGGGTCCAAGCACTACACC
ATCCGCTCCGCCGAATGAAGTGCCGAGGCTGTCCGCGCCATTGCCACCAT
CTTCTGTGCGGGCGCTTTCTGGGGGTGTAATAGGAGCTGGCAGTACGACA
GATACAACTGCATCCGGGAATGAAGCGCAACAGAGTGCGGCACCACCACC
GGCACCGCTGCCGTCACGGCTGCAAGAGCGCCAGCGGCCGAGAGGGCAGG
GCCACCAGCCTCCCCAGGGCGCACAGGCGGTACAGTTTCCACAGTCTCTA
TTGCTGGCGGAGCCTGCACAGACGTCACAGTCACATGAAGCGGTCCAGTT
GGATGAATGTGAGGACGATGATGTTGTAGAAGTTGCGAGTGTGACACGCA
AATCGGTCGTGGGTGTAGACGAGGACGATGATGAAGTTGTGTACGTTGAG
AGGCATGAAGAAGCACCGGTATCTGATTTGGATTCTGTCGCCGCGAAACT
GGGGGTGAGGTTAGTGTACCTGTCGCCATTCGATGGTACACTGTGCCCAA
TGGCGATAGAAGACATCATTGAGCCGAAGGACTCGCTGCGTCCGTTGCGC
CAGGGCTACGTGCGAGAGCTTATAGATGTGTTCAAGCGCTCTGGCTTGAA
CGTAGCACTAAGTATGATCTCGGTTGCTGTTCGGGCAATGCCGGACGCGT
TACTGGTGACGGTCGGGAAGCGGATCAATGGGAGTCCGCTGGTTCCATTC
GACATATACGGTATAGGTACGTCGCTGAACATGGCTTCGGGGACCGTGGG
GAAGACGTCATTGATGGACTTCTTGCACTGTTGTGTGTCACACGCCAGAG
CCCTCATCCGCCAACGCACTGTCGTGCAAGCATCATTGACAATGGAAGTA
CTGGCTTCGGTGGTATTGCGCACACAGGCGCTAGGTCACATAATGGAGCG
ACAGATGCAACGGTACGCGACGGTGTTGTTGAGGATTTTGAACAGTGAGA
AGTGCTACAAGAAGGTTGAAGCGCTGTTTAAGAAGATGCCTTCGGTTGGA
ATCAACCACATGTCGAGCTTATCTCTCGTTGAGGTTGACGATTGTGGTTT
TTGTCTTGCCCTGGACTGTGTGGCAAAGTGTAGTGATCAGCACCTCTCTG
GAGTTTGTGGAATGAAAATCGCATTCGCTTCCTTTCGTATGCGCTTTTAC
AAGACGGGGTCCGATCTGTACGGCATGGTAGTACGGGCTTCAAAAAGCGC
TGACCGGGAAGTAGAGGAATGGTTGGACAGTGCGATTTCCGTCACGGCTC
AGTCGAAGGTGACGATCCGCACCATAATCCTTAATGCCGAAGGCGGGAAA
AGAAGGGGTTGGAATACGAACTCTGCGTTGAAGAAGCTGCTCAAGTTCGT
TGGGAAAATCCTGGGTGAGGCGTTTTTGCAGCCGGAAAGCGTTCGTATGG
AAGGCACTGTTGTGCAGGCCAGTACGGACGCTGCCCTTATGGCCTGTCGC
CCTGCGAAAGCTAATACGACGGGTGCTGTTGCTTTGACCACCAAGGACGC
TGATCCCGATAATGTCGTAATTGTCGGGAGGGGGAGAAGCAGGACAAGTA
CGAAGAAGTGTTTTTTCGCTTCTAAAGCCGACGATGATTCAACTGGGGAT
TTTCAGCTGTCATTGTTGCGTAATAAGCCCCTCAAAACGGGTGTGAGAAG
TGGTATAGGAGAAGTGAAGAGGCCTACCTTCTCCGAAAGTAGCCGTCTTG
GAAAGGAAGGAATTGGAGAAAAAGGGGATAGGAAAGAGGTAAGGTCGGTA
GATTCAGCCTCCTTTTTAAGCCGCTTCCGCAAGCTTAACGCCATGGAGCA
GGCCGAAGTGATTGAGCGGCTGTCCCAAGTGTTTGTAGAGGAGGATAAGG
ATGTGCGAAACCCGGCAATGCGTTTATTGGACGCTGGGAATCACAAGTTC
GATGACAAACAGCCGGAGTTGCCCAAGCTTGGCTATCAGTCGTACGTGTG
A
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