Ggra1976.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1976.t1
Unique NameGgra1976.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length113
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000925_piloncontigtig00000925_pilon:62671..63009 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7460.GB45376-PA
Preferred namePIN1
PFAMsRotamase,WW
Max annot lvl33208|Metazoa
KEGG koko:K09578
KEGG Pathwayko04622,map04622
GOsGO:0000413,GO:0001558,GO:0001817,GO:0001818,GO:0001932,GO:0001933,GO:0001934,GO:0003674,GO:0003755,GO:0003774,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005829,GO:0006355,GO:0006357,GO:0006464,GO:0006807,GO:0007088,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007173,GO:0007275,GO:0007346,GO:0007399,GO:0008013,GO:0008150,GO:0008152,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010563,GO:0010564,GO:0010604,GO:0010605,GO:0010611,GO:0010613,GO:0010628,GO:0010646,GO:0010647,GO:0010648,GO:0010720,GO:0010941,GO:0010942,GO:0014742,GO:0014743,GO:0016043,GO:0016202,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016853,GO:0016859,GO:0017015,GO:0017111,GO:0018193,GO:0018208,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0022008,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030111,GO:0030154,GO:0030177,GO:0030182,GO:0030307,GO:0030496,GO:0030512,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031396,GO:0031398,GO:0031399,GO:0031400,GO:0031401,GO:0031434,GO:0031647,GO:0031974,GO:0031981,GO:0032091,GO:0032092,GO:0032268,GO:0032269,GO:0032270,GO:0032465,GO:0032479,GO:0032480,GO:0032501,GO:0032502,GO:0032794,GO:0032879,GO:0032880,GO:0033043,GO:0035303,GO:0035304,GO:0035306,GO:0035307,GO:0036211,GO:0038127,GO:0040008,GO:0040012,GO:0040013,GO:0042127,GO:0042176,GO:0042177,GO:0042325,GO:0042326,GO:0042327,GO:0042752,GO:0042981,GO:0042995,GO:0043005,GO:0043065,GO:0043066,GO:0043067,GO:0043068,GO:0043069,GO:0043085,GO:0043087,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043393,GO:0043408,GO:0043409,GO:0043412,GO:0043502,GO:0043523,GO:0043524,GO:0043525,GO:0043547,GO:0044057,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045309,GO:0045595,GO:0045597,GO:0045844,GO:0045893,GO:0045927,GO:0045935,GO:0045936,GO:0045937,GO:0045944,GO:0046620,GO:0046622,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048634,GO:0048636,GO:0048638,GO:0048639,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050795,GO:0050808,GO:0050815,GO:0050816,GO:0050821,GO:0050896,GO:0051094,GO:0051098,GO:0051099,GO:0051100,GO:0051128,GO:0051147,GO:0051149,GO:0051153,GO:0051155,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051219,GO:0051239,GO:0051240,GO:0051241,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051254,GO:0051270,GO:0051271,GO:0051302,GO:0051336,GO:0051338,GO:0051345,GO:0051347,GO:0051438,GO:0051443,GO:0051716,GO:0051726,GO:0051783,GO:0055021,GO:0055023,GO:0055024,GO:0055025,GO:0060255,GO:0060284,GO:0060341,GO:0060393,GO:0060420,GO:0060421,GO:0060548,GO:0060828,GO:0061050,GO:0061051,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070372,GO:0070373,GO:0071704,GO:0071840,GO:0080090,GO:0090092,GO:0090101,GO:0090257,GO:0090263,GO:0090287,GO:0090288,GO:0097458,GO:0120025,GO:0140096,GO:1900180,GO:1901214,GO:1901215,GO:1901216,GO:1901564,GO:1901796,GO:1901861,GO:1901863,GO:1902531,GO:1902532,GO:1902680,GO:1903320,GO:1903322,GO:1903506,GO:1903508,GO:1903827,GO:1903844,GO:1903845,GO:1904059,GO:1905207,GO:1905209,GO:2000026,GO:2000112,GO:2000145,GO:2000146,GO:2000725,GO:2000727,GO:2001141
Evalue8.95e-47
EggNOG OGsCOG0760@1|root,KOG3259@2759|Eukaryota,3A05V@33154|Opisthokonta,3BGXQ@33208|Metazoa,3CUS1@33213|Bilateria,41YZC@6656|Arthropoda,3SKXF@50557|Insecta,46I6S@7399|Hymenoptera
EC5.2.1.8
DescriptionPeptidyl-prolyl cis-trans isomerase
COG categoryO
BRITEko00000,ko00001,ko01000,ko03021,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1976Ggra1976Gracilaria gracilis GNS1m malegenetig00000925_pilon 62671..63009 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1976.t1.stop1Ggra1976.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000925_pilon 62671..62673 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1976.t1.CDS1Ggra1976.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000925_pilon 62671..63009 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1976.t1.exon1Ggra1976.t1.exon1Gracilaria gracilis GNS1m maleexontig00000925_pilon 62671..63009 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1976.t1.start1Ggra1976.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000925_pilon 63007..63009 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1976.t1Ggra1976.t1Gracilaria gracilis GNS1m malepolypeptidetig00000925_pilon 62671..63009 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1976.t1 ID=Ggra1976.t1|Name=Ggra1976.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=113bp
MSQVRCRHVLVKHAGSRRPKSWKSENITRSKEEALEMLADFRERIVLGQV
SFEELASRESDCSSARNGGDLGFFKRGEMQKPFEDIAFALEINELSGMVE
TDSGVHIIKRVA*
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spliced messenger RNA

>Ggra1976.t1 ID=Ggra1976.t1|Name=Ggra1976.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=339bp|location=Sequence derived from alignment at tig00000925_pilon:62671..63009- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCAAGTTCGATGCCGTCACGTACTCGTCAAACATGCCGGATCCCG
CCGTCCGAAATCCTGGAAATCAGAGAACATCACTCGCTCAAAGGAAGAAG
CGCTCGAAATGCTGGCGGACTTTCGCGAGCGCATAGTGCTTGGTCAAGTA
AGCTTCGAGGAACTAGCATCTCGTGAAAGTGATTGCTCCTCCGCTCGCAA
CGGAGGAGATCTGGGCTTTTTTAAGCGTGGAGAGATGCAAAAGCCGTTTG
AAGACATTGCATTTGCGTTGGAAATTAACGAACTCAGTGGAATGGTGGAG
ACAGACAGCGGAGTACACATCATTAAGCGAGTTGCCTAG
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protein sequence of Ggra1976.t1

>Ggra1976.t1 ID=Ggra1976.t1|Name=Ggra1976.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=113bp
MSQVRCRHVLVKHAGSRRPKSWKSENITRSKEEALEMLADFRERIVLGQV
SFEELASRESDCSSARNGGDLGFFKRGEMQKPFEDIAFALEINELSGMVE
TDSGVHIIKRVA*
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mRNA from alignment at tig00000925_pilon:62671..63009-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1976.t1 ID=Ggra1976.t1|Name=Ggra1976.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=339bp|location=Sequence derived from alignment at tig00000925_pilon:62671..63009- (Gracilaria gracilis GNS1m male)
ATGTCTCAAGTTCGATGCCGTCACGTACTCGTCAAACATGCCGGATCCCG
CCGTCCGAAATCCTGGAAATCAGAGAACATCACTCGCTCAAAGGAAGAAG
CGCTCGAAATGCTGGCGGACTTTCGCGAGCGCATAGTGCTTGGTCAAGTA
AGCTTCGAGGAACTAGCATCTCGTGAAAGTGATTGCTCCTCCGCTCGCAA
CGGAGGAGATCTGGGCTTTTTTAAGCGTGGAGAGATGCAAAAGCCGTTTG
AAGACATTGCATTTGCGTTGGAAATTAACGAACTCAGTGGAATGGTGGAG
ACAGACAGCGGAGTACACATCATTAAGCGAGTTGCCTAG
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Coding sequence (CDS) from alignment at tig00000925_pilon:62671..63009-

>Ggra1976.t1 ID=Ggra1976.t1|Name=Ggra1976.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=339bp|location=Sequence derived from alignment at tig00000925_pilon:62671..63009- (Gracilaria gracilis GNS1m male)
ATGTCTCAAGTTCGATGCCGTCACGTACTCGTCAAACATGCCGGATCCCG
CCGTCCGAAATCCTGGAAATCAGAGAACATCACTCGCTCAAAGGAAGAAG
CGCTCGAAATGCTGGCGGACTTTCGCGAGCGCATAGTGCTTGGTCAAGTA
AGCTTCGAGGAACTAGCATCTCGTGAAAGTGATTGCTCCTCCGCTCGCAA
CGGAGGAGATCTGGGCTTTTTTAAGCGTGGAGAGATGCAAAAGCCGTTTG
AAGACATTGCATTTGCGTTGGAAATTAACGAACTCAGTGGAATGGTGGAG
ACAGACAGCGGAGTACACATCATTAAGCGAGTTGCCTAG
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