Ggra1974.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1974.t1
Unique Name	Ggra1974.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	591

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000925_pilon	contig	tig00000925_pilon:59147..60919 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	13333.ERN15392
PFAMs	B3_4,B5,tRNA-synt_2d
Max annot lvl	35493\|Streptophyta
KEGG rclass	RC00055,RC00523
KEGG ko	ko:K01890
KEGG Reaction	R03660
KEGG Pathway	ko00970,map00970
KEGG Module	M00359,M00360
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494
Evalue	8.4e-212
EggNOG OGs	COG0072@1\|root,KOG2472@2759\|Eukaryota,37QBY@33090\|Viridiplantae,3G9AC@35493\|Streptophyta
EC	6.1.1.20
Description	Phenylalanine--tRNA ligase beta subunit
COG category	J
BRITE	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1974	Ggra1974	Gracilaria gracilis GNS1m male	gene	tig00000925_pilon 59147..60919 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1974.t1.start1	Ggra1974.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000925_pilon 59147..59149 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1974.t1.CDS1	Ggra1974.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000925_pilon 59147..60919 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1974.t1.exon1	Ggra1974.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000925_pilon 59147..60919 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1974.t1.stop1	Ggra1974.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000925_pilon 60917..60919 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1974.t1	Ggra1974.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000925_pilon 59147..60919 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000925_pilon:59147..60919+
coding sequence from alignment at tig00000925_pilon:59147..60919+

mRNA sequence

>Ggra1974.t1 ID=Ggra1974.t1|Name=Ggra1974.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=591bp
MPTVSIARDRLFEDIGRSFTEEEFDELCFEFGLELDDVVSEKPQIGSKAL
SAGVDVAEEIRYKIEVPANRYDLLCSEGLSQALRVFMGYDASVPEYKIAG
EPRYTFTVEKEVAEVRPYVFCAVLRDVRMDATIYQSLIDLQDKLHQNICR
RRTLVAIGTHDLDTLTGPFSYEALPPKDIRFVPLAKTEEYDAEQLMEVYD
EDLVLKQYLGIIRDCPRYPVIYDSNRTVLSMPPIINGDHSKITLKTRNIL
IECTATDKTKASIVLNTIVAMFSRYCEKPYTVEPVVVNYADGSTMTTPDL
SMPKVTADVNFINRSVGVNLEPNEMVTMLGRMQLPASVVDEKTIGVDVPI
IRSDVLHACDVMCDVAVGYGFNRVPEQVPETSTVGKQLPINHLADMVRRE
GLAQQGYTEVLTWVTVSNAENFGSLRRTDDGSVAVKIGNPKTLEFEECRT
SLLPGLLKTLRENRSAKVPVRLFEVGDVVLKDKDAEVLACNRRKVAAIYC
AQSAGFEIIQGLLESVLNTLAVKRGNGKGDTWSLRAEGCSDGAFFEGRRA
DIVYRGNSIGSIGWVHPEVLGNFSLSYPCSAMEFDLEAFL*

spliced messenger RNA

>Ggra1974.t1 ID=Ggra1974.t1|Name=Ggra1974.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1773bp|location=Sequence derived from alignment at tig00000925_pilon:59147..60919+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCACTGTATCAATAGCGCGCGACCGTCTTTTCGAAGATATTGGTCG
GTCTTTCACCGAGGAAGAATTTGATGAGCTTTGCTTCGAATTCGGTTTGG
AACTCGACGACGTCGTCAGTGAGAAACCTCAAATAGGGTCAAAGGCACTT
TCCGCCGGAGTGGACGTTGCTGAAGAAATCCGGTACAAGATCGAAGTACC
TGCTAATCGATATGATTTGCTATGTTCGGAGGGGTTAAGCCAGGCTCTTC
GTGTGTTTATGGGTTATGATGCATCCGTTCCAGAATATAAGATTGCTGGT
GAACCACGGTACACTTTCACTGTGGAGAAAGAGGTGGCCGAAGTCCGACC
TTATGTGTTCTGTGCCGTTCTCCGGGATGTGCGCATGGATGCGACCATCT
ATCAGAGTCTAATTGACTTGCAAGATAAGCTCCATCAGAACATTTGCAGA
CGTCGTACATTGGTAGCTATAGGTACTCATGACCTGGACACACTTACGGG
ACCTTTTTCGTACGAAGCGCTCCCACCTAAGGATATCCGTTTCGTGCCGC
TAGCCAAGACAGAAGAGTATGACGCTGAACAGTTAATGGAAGTCTATGAT
GAAGATCTTGTTCTCAAGCAATACTTGGGTATCATTCGCGATTGTCCTCG
ATACCCTGTAATCTATGACTCCAATCGAACGGTGCTCTCAATGCCGCCAA
TCATTAATGGGGACCATTCAAAGATAACTCTGAAGACGAGAAATATACTA
ATTGAATGTACTGCGACGGACAAGACGAAGGCTAGTATCGTTTTGAATAC
CATTGTAGCCATGTTCTCTCGGTACTGCGAGAAGCCTTACACCGTGGAGC
CTGTCGTGGTTAACTATGCAGATGGTTCGACCATGACAACGCCAGATTTG
TCCATGCCCAAAGTCACTGCCGATGTCAACTTCATAAATCGAAGTGTTGG
GGTAAATCTTGAGCCAAATGAGATGGTTACCATGCTTGGTCGTATGCAAC
TACCAGCGAGCGTTGTGGACGAGAAGACAATTGGTGTTGACGTACCTATC
ATAAGATCGGATGTGCTTCATGCTTGTGACGTAATGTGTGATGTAGCTGT
AGGGTACGGCTTTAACCGAGTTCCAGAGCAAGTGCCAGAAACTAGCACGG
TTGGGAAGCAGCTGCCGATCAATCACCTTGCAGATATGGTTCGAAGAGAA
GGGCTAGCTCAGCAAGGATACACAGAAGTGCTTACATGGGTTACAGTTTC
TAACGCAGAAAACTTTGGTTCTCTGCGACGGACTGACGACGGCTCCGTGG
CGGTAAAGATTGGAAACCCCAAGACATTAGAGTTTGAAGAGTGCCGGACT
TCGTTGTTACCAGGCTTGTTGAAGACATTACGAGAAAACCGGAGTGCAAA
GGTACCTGTCCGCCTTTTCGAAGTGGGAGACGTGGTGTTAAAGGATAAGG
ATGCGGAGGTGTTAGCGTGCAACCGAAGAAAAGTAGCAGCGATATACTGC
GCACAATCCGCAGGCTTCGAGATTATTCAGGGACTGTTGGAGAGCGTGTT
GAACACTCTTGCAGTGAAGCGCGGAAATGGCAAAGGGGACACCTGGAGCT
TACGTGCTGAAGGCTGTTCTGACGGCGCATTCTTTGAAGGAAGAAGAGCT
GACATCGTCTACCGTGGCAATTCAATTGGTTCGATTGGCTGGGTGCATCC
AGAAGTGCTTGGGAACTTCTCTCTCAGCTACCCGTGTTCGGCGATGGAGT
TCGATCTGGAAGCATTTCTGTAG

protein sequence of Ggra1974.t1

>Ggra1974.t1 ID=Ggra1974.t1|Name=Ggra1974.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=591bp
MPTVSIARDRLFEDIGRSFTEEEFDELCFEFGLELDDVVSEKPQIGSKAL
SAGVDVAEEIRYKIEVPANRYDLLCSEGLSQALRVFMGYDASVPEYKIAG
EPRYTFTVEKEVAEVRPYVFCAVLRDVRMDATIYQSLIDLQDKLHQNICR
RRTLVAIGTHDLDTLTGPFSYEALPPKDIRFVPLAKTEEYDAEQLMEVYD
EDLVLKQYLGIIRDCPRYPVIYDSNRTVLSMPPIINGDHSKITLKTRNIL
IECTATDKTKASIVLNTIVAMFSRYCEKPYTVEPVVVNYADGSTMTTPDL
SMPKVTADVNFINRSVGVNLEPNEMVTMLGRMQLPASVVDEKTIGVDVPI
IRSDVLHACDVMCDVAVGYGFNRVPEQVPETSTVGKQLPINHLADMVRRE
GLAQQGYTEVLTWVTVSNAENFGSLRRTDDGSVAVKIGNPKTLEFEECRT
SLLPGLLKTLRENRSAKVPVRLFEVGDVVLKDKDAEVLACNRRKVAAIYC
AQSAGFEIIQGLLESVLNTLAVKRGNGKGDTWSLRAEGCSDGAFFEGRRA
DIVYRGNSIGSIGWVHPEVLGNFSLSYPCSAMEFDLEAFL*

mRNA from alignment at tig00000925_pilon:59147..60919+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1974.t1 ID=Ggra1974.t1|Name=Ggra1974.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1773bp|location=Sequence derived from alignment at tig00000925_pilon:59147..60919+ (Gracilaria gracilis GNS1m male)
ATGCCCACTGTATCAATAGCGCGCGACCGTCTTTTCGAAGATATTGGTCG
GTCTTTCACCGAGGAAGAATTTGATGAGCTTTGCTTCGAATTCGGTTTGG
AACTCGACGACGTCGTCAGTGAGAAACCTCAAATAGGGTCAAAGGCACTT
TCCGCCGGAGTGGACGTTGCTGAAGAAATCCGGTACAAGATCGAAGTACC
TGCTAATCGATATGATTTGCTATGTTCGGAGGGGTTAAGCCAGGCTCTTC
GTGTGTTTATGGGTTATGATGCATCCGTTCCAGAATATAAGATTGCTGGT
GAACCACGGTACACTTTCACTGTGGAGAAAGAGGTGGCCGAAGTCCGACC
TTATGTGTTCTGTGCCGTTCTCCGGGATGTGCGCATGGATGCGACCATCT
ATCAGAGTCTAATTGACTTGCAAGATAAGCTCCATCAGAACATTTGCAGA
CGTCGTACATTGGTAGCTATAGGTACTCATGACCTGGACACACTTACGGG
ACCTTTTTCGTACGAAGCGCTCCCACCTAAGGATATCCGTTTCGTGCCGC
TAGCCAAGACAGAAGAGTATGACGCTGAACAGTTAATGGAAGTCTATGAT
GAAGATCTTGTTCTCAAGCAATACTTGGGTATCATTCGCGATTGTCCTCG
ATACCCTGTAATCTATGACTCCAATCGAACGGTGCTCTCAATGCCGCCAA
TCATTAATGGGGACCATTCAAAGATAACTCTGAAGACGAGAAATATACTA
ATTGAATGTACTGCGACGGACAAGACGAAGGCTAGTATCGTTTTGAATAC
CATTGTAGCCATGTTCTCTCGGTACTGCGAGAAGCCTTACACCGTGGAGC
CTGTCGTGGTTAACTATGCAGATGGTTCGACCATGACAACGCCAGATTTG
TCCATGCCCAAAGTCACTGCCGATGTCAACTTCATAAATCGAAGTGTTGG
GGTAAATCTTGAGCCAAATGAGATGGTTACCATGCTTGGTCGTATGCAAC
TACCAGCGAGCGTTGTGGACGAGAAGACAATTGGTGTTGACGTACCTATC
ATAAGATCGGATGTGCTTCATGCTTGTGACGTAATGTGTGATGTAGCTGT
AGGGTACGGCTTTAACCGAGTTCCAGAGCAAGTGCCAGAAACTAGCACGG
TTGGGAAGCAGCTGCCGATCAATCACCTTGCAGATATGGTTCGAAGAGAA
GGGCTAGCTCAGCAAGGATACACAGAAGTGCTTACATGGGTTACAGTTTC
TAACGCAGAAAACTTTGGTTCTCTGCGACGGACTGACGACGGCTCCGTGG
CGGTAAAGATTGGAAACCCCAAGACATTAGAGTTTGAAGAGTGCCGGACT
TCGTTGTTACCAGGCTTGTTGAAGACATTACGAGAAAACCGGAGTGCAAA
GGTACCTGTCCGCCTTTTCGAAGTGGGAGACGTGGTGTTAAAGGATAAGG
ATGCGGAGGTGTTAGCGTGCAACCGAAGAAAAGTAGCAGCGATATACTGC
GCACAATCCGCAGGCTTCGAGATTATTCAGGGACTGTTGGAGAGCGTGTT
GAACACTCTTGCAGTGAAGCGCGGAAATGGCAAAGGGGACACCTGGAGCT
TACGTGCTGAAGGCTGTTCTGACGGCGCATTCTTTGAAGGAAGAAGAGCT
GACATCGTCTACCGTGGCAATTCAATTGGTTCGATTGGCTGGGTGCATCC
AGAAGTGCTTGGGAACTTCTCTCTCAGCTACCCGTGTTCGGCGATGGAGT
TCGATCTGGAAGCATTTCTGTAG

Coding sequence (CDS) from alignment at tig00000925_pilon:59147..60919+

>Ggra1974.t1 ID=Ggra1974.t1|Name=Ggra1974.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1773bp|location=Sequence derived from alignment at tig00000925_pilon:59147..60919+ (Gracilaria gracilis GNS1m male)
ATGCCCACTGTATCAATAGCGCGCGACCGTCTTTTCGAAGATATTGGTCG
GTCTTTCACCGAGGAAGAATTTGATGAGCTTTGCTTCGAATTCGGTTTGG
AACTCGACGACGTCGTCAGTGAGAAACCTCAAATAGGGTCAAAGGCACTT
TCCGCCGGAGTGGACGTTGCTGAAGAAATCCGGTACAAGATCGAAGTACC
TGCTAATCGATATGATTTGCTATGTTCGGAGGGGTTAAGCCAGGCTCTTC
GTGTGTTTATGGGTTATGATGCATCCGTTCCAGAATATAAGATTGCTGGT
GAACCACGGTACACTTTCACTGTGGAGAAAGAGGTGGCCGAAGTCCGACC
TTATGTGTTCTGTGCCGTTCTCCGGGATGTGCGCATGGATGCGACCATCT
ATCAGAGTCTAATTGACTTGCAAGATAAGCTCCATCAGAACATTTGCAGA
CGTCGTACATTGGTAGCTATAGGTACTCATGACCTGGACACACTTACGGG
ACCTTTTTCGTACGAAGCGCTCCCACCTAAGGATATCCGTTTCGTGCCGC
TAGCCAAGACAGAAGAGTATGACGCTGAACAGTTAATGGAAGTCTATGAT
GAAGATCTTGTTCTCAAGCAATACTTGGGTATCATTCGCGATTGTCCTCG
ATACCCTGTAATCTATGACTCCAATCGAACGGTGCTCTCAATGCCGCCAA
TCATTAATGGGGACCATTCAAAGATAACTCTGAAGACGAGAAATATACTA
ATTGAATGTACTGCGACGGACAAGACGAAGGCTAGTATCGTTTTGAATAC
CATTGTAGCCATGTTCTCTCGGTACTGCGAGAAGCCTTACACCGTGGAGC
CTGTCGTGGTTAACTATGCAGATGGTTCGACCATGACAACGCCAGATTTG
TCCATGCCCAAAGTCACTGCCGATGTCAACTTCATAAATCGAAGTGTTGG
GGTAAATCTTGAGCCAAATGAGATGGTTACCATGCTTGGTCGTATGCAAC
TACCAGCGAGCGTTGTGGACGAGAAGACAATTGGTGTTGACGTACCTATC
ATAAGATCGGATGTGCTTCATGCTTGTGACGTAATGTGTGATGTAGCTGT
AGGGTACGGCTTTAACCGAGTTCCAGAGCAAGTGCCAGAAACTAGCACGG
TTGGGAAGCAGCTGCCGATCAATCACCTTGCAGATATGGTTCGAAGAGAA
GGGCTAGCTCAGCAAGGATACACAGAAGTGCTTACATGGGTTACAGTTTC
TAACGCAGAAAACTTTGGTTCTCTGCGACGGACTGACGACGGCTCCGTGG
CGGTAAAGATTGGAAACCCCAAGACATTAGAGTTTGAAGAGTGCCGGACT
TCGTTGTTACCAGGCTTGTTGAAGACATTACGAGAAAACCGGAGTGCAAA
GGTACCTGTCCGCCTTTTCGAAGTGGGAGACGTGGTGTTAAAGGATAAGG
ATGCGGAGGTGTTAGCGTGCAACCGAAGAAAAGTAGCAGCGATATACTGC
GCACAATCCGCAGGCTTCGAGATTATTCAGGGACTGTTGGAGAGCGTGTT
GAACACTCTTGCAGTGAAGCGCGGAAATGGCAAAGGGGACACCTGGAGCT
TACGTGCTGAAGGCTGTTCTGACGGCGCATTCTTTGAAGGAAGAAGAGCT
GACATCGTCTACCGTGGCAATTCAATTGGTTCGATTGGCTGGGTGCATCC
AGAAGTGCTTGGGAACTTCTCTCTCAGCTACCCGTGTTCGGCGATGGAGT
TCGATCTGGAAGCATTTCTGTAG