Ggra1968.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1968.t1
Unique NameGgra1968.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length162
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000925_piloncontigtig00000925_pilon:46371..46856 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1968Ggra1968Gracilaria gracilis GNS1m malegenetig00000925_pilon 46371..46856 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1968.t1.start1Ggra1968.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000925_pilon 46371..46373 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1968.t1.CDS1Ggra1968.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000925_pilon 46371..46856 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1968.t1.exon1Ggra1968.t1.exon1Gracilaria gracilis GNS1m maleexontig00000925_pilon 46371..46856 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1968.t1.stop1Ggra1968.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000925_pilon 46854..46856 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1968.t1Ggra1968.t1Gracilaria gracilis GNS1m malepolypeptidetig00000925_pilon 46371..46856 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1968.t1 ID=Ggra1968.t1|Name=Ggra1968.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=162bp
MHVVAAARALPSSSCSSSSPSSFGDEPAVLGCATGEVRRMRSVLDMKLGA
MAASLDASLDPDAPPPPPPAPPARAPPSRCEQLDALERARGGAHMVDAFG
IAIPSSTRRKMRIHGVTEPVCCRARDGAQLSMALSPSGSDGACAVVLAES
PSTLDLSALMC*
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spliced messenger RNA

>Ggra1968.t1 ID=Ggra1968.t1|Name=Ggra1968.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=486bp|location=Sequence derived from alignment at tig00000925_pilon:46371..46856+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACGTGGTGGCGGCCGCACGCGCGCTGCCGtcgtcctcgtgctcctc
ctcctccccctcctcctTTGGCGACGAGCCCGCCGTGCTGGGCTGCGCCA
CGGGCGAGGTGCGGCGCATGCGCTCCGTACTGGACATGAAGCTGGGCGCC
ATGGCGGCGTCGCTGGACGCCAGTCTGGACCCGGACGcgccgccgccgcc
gccgccggcgccgccggcgcgggcgccgccATCACGCTGCGAGCAGCTCG
ACGCGCTGGAGCGCGCTCGCGGCGGCGCGCACATGGTGGACGCGTTCGGT
ATCGCCATCCCCAGCAGCACGCGGCGCAAGATGCGCATCCACGGCGTGAC
CGAGCCCGTGTGCTGCCGCGCGCGCGACGGCGCGCAGTTGTCCATGGCGC
TGTCGCCCAGCGGCAGCGACGGCGCGTGCGCCGTGGTGCTTGCTGAGTCG
CCGTCTACGTTGGACCTTTCGGCGCTCATGTGCTGA
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protein sequence of Ggra1968.t1

>Ggra1968.t1 ID=Ggra1968.t1|Name=Ggra1968.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=162bp
MHVVAAARALPSSSCSSSSPSSFGDEPAVLGCATGEVRRMRSVLDMKLGA
MAASLDASLDPDAPPPPPPAPPARAPPSRCEQLDALERARGGAHMVDAFG
IAIPSSTRRKMRIHGVTEPVCCRARDGAQLSMALSPSGSDGACAVVLAES
PSTLDLSALMC*
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mRNA from alignment at tig00000925_pilon:46371..46856+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1968.t1 ID=Ggra1968.t1|Name=Ggra1968.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=486bp|location=Sequence derived from alignment at tig00000925_pilon:46371..46856+ (Gracilaria gracilis GNS1m male)
ATGCACGTGGTGGCGGCCGCACGCGCGCTGCCGtcgtcctcgtgctcctc
ctcctccccctcctcctTTGGCGACGAGCCCGCCGTGCTGGGCTGCGCCA
CGGGCGAGGTGCGGCGCATGCGCTCCGTACTGGACATGAAGCTGGGCGCC
ATGGCGGCGTCGCTGGACGCCAGTCTGGACCCGGACGcgccgccgccgcc
gccgccggcgccgccggcgcgggcgccgccATCACGCTGCGAGCAGCTCG
ACGCGCTGGAGCGCGCTCGCGGCGGCGCGCACATGGTGGACGCGTTCGGT
ATCGCCATCCCCAGCAGCACGCGGCGCAAGATGCGCATCCACGGCGTGAC
CGAGCCCGTGTGCTGCCGCGCGCGCGACGGCGCGCAGTTGTCCATGGCGC
TGTCGCCCAGCGGCAGCGACGGCGCGTGCGCCGTGGTGCTTGCTGAGTCG
CCGTCTACGTTGGACCTTTCGGCGCTCATGTGCTGA
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Coding sequence (CDS) from alignment at tig00000925_pilon:46371..46856+

>Ggra1968.t1 ID=Ggra1968.t1|Name=Ggra1968.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=486bp|location=Sequence derived from alignment at tig00000925_pilon:46371..46856+ (Gracilaria gracilis GNS1m male)
ATGCACGTGGTGGCGGCCGCACGCGCGCTGCCGtcgtcctcgtgctcctc
ctcctccccctcctcctTTGGCGACGAGCCCGCCGTGCTGGGCTGCGCCA
CGGGCGAGGTGCGGCGCATGCGCTCCGTACTGGACATGAAGCTGGGCGCC
ATGGCGGCGTCGCTGGACGCCAGTCTGGACCCGGACGcgccgccgccgcc
gccgccggcgccgccggcgcgggcgccgccATCACGCTGCGAGCAGCTCG
ACGCGCTGGAGCGCGCTCGCGGCGGCGCGCACATGGTGGACGCGTTCGGT
ATCGCCATCCCCAGCAGCACGCGGCGCAAGATGCGCATCCACGGCGTGAC
CGAGCCCGTGTGCTGCCGCGCGCGCGACGGCGCGCAGTTGTCCATGGCGC
TGTCGCCCAGCGGCAGCGACGGCGCGTGCGCCGTGGTGCTTGCTGAGTCG
CCGTCTACGTTGGACCTTTCGGCGCTCATGTGCTGA
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