Ggra1961.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1961.t1
Unique Name	Ggra1961.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	566

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000925_pilon	contig	tig00000925_pilon:34223..35920 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2880.D7FIB1
PFAMs	Lipase_3
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K13806
KEGG Pathway	ko04723,ko04745,ko04925,map04723,map04745,map04925
Evalue	8.45e-36
EggNOG OGs	KOG2088@1\|root,KOG2088@2759\|Eukaryota
Description	retrograde trans-synaptic signaling by lipid
COG category	S
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1961	Ggra1961	Gracilaria gracilis GNS1m male	gene	tig00000925_pilon 34223..35920 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1961.t1.stop1	Ggra1961.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000925_pilon 34223..34225 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1961.t1.CDS1	Ggra1961.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000925_pilon 34223..35920 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1961.t1.exon1	Ggra1961.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000925_pilon 34223..35920 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1961.t1.start1	Ggra1961.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000925_pilon 35918..35920 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1961.t1	Ggra1961.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000925_pilon 34223..35920 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000925_pilon:34223..35920-
coding sequence from alignment at tig00000925_pilon:34223..35920-

mRNA sequence

>Ggra1961.t1 ID=Ggra1961.t1|Name=Ggra1961.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=566bp
MSDPSPEEPKDQPGASEASSLLVPNGYGMDVSEYDPIPLEEDLEKIEPPV
NDDRRSQHWLAFLVLPGRIAFGALSYTAGAALLKRTTSSRIASFFGGIMS
FFAGQFLVSYGAKRAQELFESEKERAVRVHLQRMAWFEAVQAIGKIVDKF
QCDIPRPERLHHVYYDVSFARMLHENQSRQLMRSGREATPSSLDILILGR
HYLDFAVACYGFIMLQTGGILESSYLPTVHGFRGIDVAKYMLRLEDHEIL
ASHLDGEHINVPRHFLVLDEVYKSIVISIRGTSSISDLITDLLCENTPFA
GGYAHSGMKDAAEALYTSLLPRLRAASLKYPRYSLVVTGHSLGGGVAILL
TKILLLNGFSGVRCYAMAPCPVFGPKHKIDPDWSDAVECFVHADDIVPAL
CFESARNLFRQLYYLHHLPLSVQEKKDIIANRNVRKLQKCCSTHSQALPR
GNRESRPLYLPSHHGVHWLLPETHAGMTDRKKKRETCRTGREPAPAYIAT
EAYGGHVVNPRLFEQMLVTPECINSHLTESYVTAFAGLELPAPRERPEAP
ARTNYARPWYSNELG*

spliced messenger RNA

>Ggra1961.t1 ID=Ggra1961.t1|Name=Ggra1961.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1698bp|location=Sequence derived from alignment at tig00000925_pilon:34223..35920- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGATCCATCGCCTGAGGAGCCTAAGGATCAACCTGGTGCCTCAGA
AGCATCTTCCTTGCTGGTTCCAAATGGCTATGGAATGGATGTCTCTGAGT
ACGATCCTATCCCCCTCGAAGAGGACCTTGAAAAGATTGAACCACCTGTG
AATGATGACCGTCGAAGTCAACACTGGCTTGCTTTCCTTGTTTTGCCTGG
CCGCATTGCCTTCGGGGCTTTGAGCTACACGGCTGGTGCTGCACTCTTGA
AGCGAACTACTAGCTCCAGGATCGCCTCCTTTTTTGGCGGTATTATGTCC
TTCTTCGCCGGCCAATTTCTCGTATCATACGGGGCAAAAAGAGCACAGGA
GCTATTCGAGAGCGAAAAAGAACGAGCAGTCCGCGTTCATCTGCAACGCA
TGGCTTGGTTTGAAGCTGTCCAGGCGATCGGCAAAATCGTGGACAAGTTT
CAATGCGACATCCCTCGACCGGAGAGGCTTCATCACGTGTATTATGATGT
ATCCTTTGCAAGAATGCTACACGAGAATCAAAGTCGTCAATTGATGCGGT
CGGGCAGAGAAGCGACCCCCAGTTCGCTTGATATCCTTATCCTCGGACGT
CACTATCTTGATTTCGCAGTAGCATGTTATGGCTTCATCATGCTTCAAAC
TGGTGGAATCCTCGAATCGTCCTATCTCCCAACCGTTCACGGGTTTCGTG
GCATTGATGTCGCCAAGTACATGCTGCGATTAGAAGATCATGAGATTCTG
GCCTCACACTTGGACGGGGAGCACATAAACGTGCCAAGACATTTTCTTGT
TCTTGATGAAGTCTACAAGTCGATTGTCATATCCATTCGCGGGACGAGCT
CTATTAGCGATCTCATTACGGACCTTTTGTGTGAGAACACTCCATTCGCT
GGAGGTTACGCACACAGCGGTATGAAAGACGCTGCAGAGGCGTTATATAC
TAGCCTTTTGCCTAGGCTCCGAGCCGCCTCCTTAAAGTATCCGCGATACT
CTTTGGTGGTAACTGGTCACAGTCTTGGTGGCGGGGTAGCAATTCTCTTG
ACCAAAATCCTTCTTCTGAACGGGTTCTCGGGTGTGAGATGCTACGCTAT
GGCCCCTTGCCCTGTGTTCGGGCCAAAGCACAAGATAGATCCGGATTGGA
GCGACGCCGTTGAGTGTTTTGTGCACGCTGATGACATTGTTCCCGCGCTC
TGCTTCGAATCGGCTCGTAACCTCTTTCGTCAACTTTATTACTTGCATCA
CCTCCCCCTTTCTGTCCAAGAAAAGAAAGACATCATAGCGAACAGAAATG
TGAGAAAGTTACAGAAATGCTGTTCAACTCACAGTCAGGCGTTGCCCAGG
GGCAATCGAGAGTCAAGACCGCTTTATCTCCCTTCCCATCATGGCGTTCA
TTGGTTGCTGCCCGAAACTCACGCTGGAATGACTGATCGCAAGAAGAAGC
GTGAAACATGCAGAACTGGTAGAGAGCCAGCTCCAGCATACATAGCAACG
GAAGCATATGGAGGTCACGTCGTGAACCCTCGGCTCTTCGAGCAGATGCT
AGTCACTCCAGAGTGCATCAATTCTCATTTAACAGAAAGTTACGTGACTG
CCTTTGCTGGTCTTGAGCTTCCTGCCCCTAGAGAGCGCCCTGAAGCTCCA
GCTCGTACAAATTATGCTCGGCCTTGGTATTCTAATGAGTTGGGTTGA

protein sequence of Ggra1961.t1

>Ggra1961.t1 ID=Ggra1961.t1|Name=Ggra1961.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=566bp
MSDPSPEEPKDQPGASEASSLLVPNGYGMDVSEYDPIPLEEDLEKIEPPV
NDDRRSQHWLAFLVLPGRIAFGALSYTAGAALLKRTTSSRIASFFGGIMS
FFAGQFLVSYGAKRAQELFESEKERAVRVHLQRMAWFEAVQAIGKIVDKF
QCDIPRPERLHHVYYDVSFARMLHENQSRQLMRSGREATPSSLDILILGR
HYLDFAVACYGFIMLQTGGILESSYLPTVHGFRGIDVAKYMLRLEDHEIL
ASHLDGEHINVPRHFLVLDEVYKSIVISIRGTSSISDLITDLLCENTPFA
GGYAHSGMKDAAEALYTSLLPRLRAASLKYPRYSLVVTGHSLGGGVAILL
TKILLLNGFSGVRCYAMAPCPVFGPKHKIDPDWSDAVECFVHADDIVPAL
CFESARNLFRQLYYLHHLPLSVQEKKDIIANRNVRKLQKCCSTHSQALPR
GNRESRPLYLPSHHGVHWLLPETHAGMTDRKKKRETCRTGREPAPAYIAT
EAYGGHVVNPRLFEQMLVTPECINSHLTESYVTAFAGLELPAPRERPEAP
ARTNYARPWYSNELG*

mRNA from alignment at tig00000925_pilon:34223..35920-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1961.t1 ID=Ggra1961.t1|Name=Ggra1961.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1698bp|location=Sequence derived from alignment at tig00000925_pilon:34223..35920- (Gracilaria gracilis GNS1m male)
ATGTCGGATCCATCGCCTGAGGAGCCTAAGGATCAACCTGGTGCCTCAGA
AGCATCTTCCTTGCTGGTTCCAAATGGCTATGGAATGGATGTCTCTGAGT
ACGATCCTATCCCCCTCGAAGAGGACCTTGAAAAGATTGAACCACCTGTG
AATGATGACCGTCGAAGTCAACACTGGCTTGCTTTCCTTGTTTTGCCTGG
CCGCATTGCCTTCGGGGCTTTGAGCTACACGGCTGGTGCTGCACTCTTGA
AGCGAACTACTAGCTCCAGGATCGCCTCCTTTTTTGGCGGTATTATGTCC
TTCTTCGCCGGCCAATTTCTCGTATCATACGGGGCAAAAAGAGCACAGGA
GCTATTCGAGAGCGAAAAAGAACGAGCAGTCCGCGTTCATCTGCAACGCA
TGGCTTGGTTTGAAGCTGTCCAGGCGATCGGCAAAATCGTGGACAAGTTT
CAATGCGACATCCCTCGACCGGAGAGGCTTCATCACGTGTATTATGATGT
ATCCTTTGCAAGAATGCTACACGAGAATCAAAGTCGTCAATTGATGCGGT
CGGGCAGAGAAGCGACCCCCAGTTCGCTTGATATCCTTATCCTCGGACGT
CACTATCTTGATTTCGCAGTAGCATGTTATGGCTTCATCATGCTTCAAAC
TGGTGGAATCCTCGAATCGTCCTATCTCCCAACCGTTCACGGGTTTCGTG
GCATTGATGTCGCCAAGTACATGCTGCGATTAGAAGATCATGAGATTCTG
GCCTCACACTTGGACGGGGAGCACATAAACGTGCCAAGACATTTTCTTGT
TCTTGATGAAGTCTACAAGTCGATTGTCATATCCATTCGCGGGACGAGCT
CTATTAGCGATCTCATTACGGACCTTTTGTGTGAGAACACTCCATTCGCT
GGAGGTTACGCACACAGCGGTATGAAAGACGCTGCAGAGGCGTTATATAC
TAGCCTTTTGCCTAGGCTCCGAGCCGCCTCCTTAAAGTATCCGCGATACT
CTTTGGTGGTAACTGGTCACAGTCTTGGTGGCGGGGTAGCAATTCTCTTG
ACCAAAATCCTTCTTCTGAACGGGTTCTCGGGTGTGAGATGCTACGCTAT
GGCCCCTTGCCCTGTGTTCGGGCCAAAGCACAAGATAGATCCGGATTGGA
GCGACGCCGTTGAGTGTTTTGTGCACGCTGATGACATTGTTCCCGCGCTC
TGCTTCGAATCGGCTCGTAACCTCTTTCGTCAACTTTATTACTTGCATCA
CCTCCCCCTTTCTGTCCAAGAAAAGAAAGACATCATAGCGAACAGAAATG
TGAGAAAGTTACAGAAATGCTGTTCAACTCACAGTCAGGCGTTGCCCAGG
GGCAATCGAGAGTCAAGACCGCTTTATCTCCCTTCCCATCATGGCGTTCA
TTGGTTGCTGCCCGAAACTCACGCTGGAATGACTGATCGCAAGAAGAAGC
GTGAAACATGCAGAACTGGTAGAGAGCCAGCTCCAGCATACATAGCAACG
GAAGCATATGGAGGTCACGTCGTGAACCCTCGGCTCTTCGAGCAGATGCT
AGTCACTCCAGAGTGCATCAATTCTCATTTAACAGAAAGTTACGTGACTG
CCTTTGCTGGTCTTGAGCTTCCTGCCCCTAGAGAGCGCCCTGAAGCTCCA
GCTCGTACAAATTATGCTCGGCCTTGGTATTCTAATGAGTTGGGTTGA

Coding sequence (CDS) from alignment at tig00000925_pilon:34223..35920-

>Ggra1961.t1 ID=Ggra1961.t1|Name=Ggra1961.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1698bp|location=Sequence derived from alignment at tig00000925_pilon:34223..35920- (Gracilaria gracilis GNS1m male)
ATGTCGGATCCATCGCCTGAGGAGCCTAAGGATCAACCTGGTGCCTCAGA
AGCATCTTCCTTGCTGGTTCCAAATGGCTATGGAATGGATGTCTCTGAGT
ACGATCCTATCCCCCTCGAAGAGGACCTTGAAAAGATTGAACCACCTGTG
AATGATGACCGTCGAAGTCAACACTGGCTTGCTTTCCTTGTTTTGCCTGG
CCGCATTGCCTTCGGGGCTTTGAGCTACACGGCTGGTGCTGCACTCTTGA
AGCGAACTACTAGCTCCAGGATCGCCTCCTTTTTTGGCGGTATTATGTCC
TTCTTCGCCGGCCAATTTCTCGTATCATACGGGGCAAAAAGAGCACAGGA
GCTATTCGAGAGCGAAAAAGAACGAGCAGTCCGCGTTCATCTGCAACGCA
TGGCTTGGTTTGAAGCTGTCCAGGCGATCGGCAAAATCGTGGACAAGTTT
CAATGCGACATCCCTCGACCGGAGAGGCTTCATCACGTGTATTATGATGT
ATCCTTTGCAAGAATGCTACACGAGAATCAAAGTCGTCAATTGATGCGGT
CGGGCAGAGAAGCGACCCCCAGTTCGCTTGATATCCTTATCCTCGGACGT
CACTATCTTGATTTCGCAGTAGCATGTTATGGCTTCATCATGCTTCAAAC
TGGTGGAATCCTCGAATCGTCCTATCTCCCAACCGTTCACGGGTTTCGTG
GCATTGATGTCGCCAAGTACATGCTGCGATTAGAAGATCATGAGATTCTG
GCCTCACACTTGGACGGGGAGCACATAAACGTGCCAAGACATTTTCTTGT
TCTTGATGAAGTCTACAAGTCGATTGTCATATCCATTCGCGGGACGAGCT
CTATTAGCGATCTCATTACGGACCTTTTGTGTGAGAACACTCCATTCGCT
GGAGGTTACGCACACAGCGGTATGAAAGACGCTGCAGAGGCGTTATATAC
TAGCCTTTTGCCTAGGCTCCGAGCCGCCTCCTTAAAGTATCCGCGATACT
CTTTGGTGGTAACTGGTCACAGTCTTGGTGGCGGGGTAGCAATTCTCTTG
ACCAAAATCCTTCTTCTGAACGGGTTCTCGGGTGTGAGATGCTACGCTAT
GGCCCCTTGCCCTGTGTTCGGGCCAAAGCACAAGATAGATCCGGATTGGA
GCGACGCCGTTGAGTGTTTTGTGCACGCTGATGACATTGTTCCCGCGCTC
TGCTTCGAATCGGCTCGTAACCTCTTTCGTCAACTTTATTACTTGCATCA
CCTCCCCCTTTCTGTCCAAGAAAAGAAAGACATCATAGCGAACAGAAATG
TGAGAAAGTTACAGAAATGCTGTTCAACTCACAGTCAGGCGTTGCCCAGG
GGCAATCGAGAGTCAAGACCGCTTTATCTCCCTTCCCATCATGGCGTTCA
TTGGTTGCTGCCCGAAACTCACGCTGGAATGACTGATCGCAAGAAGAAGC
GTGAAACATGCAGAACTGGTAGAGAGCCAGCTCCAGCATACATAGCAACG
GAAGCATATGGAGGTCACGTCGTGAACCCTCGGCTCTTCGAGCAGATGCT
AGTCACTCCAGAGTGCATCAATTCTCATTTAACAGAAAGTTACGTGACTG
CCTTTGCTGGTCTTGAGCTTCCTGCCCCTAGAGAGCGCCCTGAAGCTCCA
GCTCGTACAAATTATGCTCGGCCTTGGTATTCTAATGAGTTGGGTTGA