Ggra1892.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1892.t1
Unique NameGgra1892.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length147
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000181_piloncontigtig00000181_pilon:102574..103014 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1892Ggra1892Gracilaria gracilis GNS1m malegenetig00000181_pilon 102574..103014 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1892.t1.start1Ggra1892.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000181_pilon 102574..102576 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1892.t1.CDS1Ggra1892.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000181_pilon 102574..103014 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1892.t1.exon1Ggra1892.t1.exon1Gracilaria gracilis GNS1m maleexontig00000181_pilon 102574..103014 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1892.t1.stop1Ggra1892.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000181_pilon 103012..103014 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1892.t1Ggra1892.t1Gracilaria gracilis GNS1m malepolypeptidetig00000181_pilon 102574..103014 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1892.t1 ID=Ggra1892.t1|Name=Ggra1892.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=147bp
MSNHSEKPKRGRPPTYKFNKPDSELSENEKRLKDSVMKRRMRQNRSYHEK
KKLRQLEKQKLLTSSSSSRSLPPSSSSSSSSSSWAPAPQQWTPPPPMSLS
SGYNIVDNRLHIPEELLRLGQLVHDDLTRVQGGSSVFFQEPGHNHK*
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spliced messenger RNA

>Ggra1892.t1 ID=Ggra1892.t1|Name=Ggra1892.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=441bp|location=Sequence derived from alignment at tig00000181_pilon:102574..103014+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCAATCACAGTGAGAAGCCAAAAAGAGGGCGCCCCCCAACCTACAA
GTTCAACAAGCCTGACTCTGAGCTGTCAGAAAACGAGAAGCGTCTCAAGG
ACTCCGTCATGAAGCGCCGCATGAGGCAGAACCGCAGCTATCACGAGAAG
AAGAAGCTTCGACAGTTGGAAAAGCAGAAACTGTTAACCTCCAGTTCGTC
GTCTAGGTCGttgcccccatcgtcgtcgtcatcgtcgtcgtcatcCTCAT
GGGCACCTGCTCCTCAGCAGTGGACACCACCACCTCCCATGTCCTTGTCG
TCCGGTTACAACATTGTGGACAACCGTCTCCACATCCCGGAGGAGCTTTT
GAGACTGGGACAACTCGTTCATGACGATTTGACCCGCGTTCAGGGCGGAT
CGTCCGTCTTCTTCCAAGAGCCCGGTCACAACCACAAATGA
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protein sequence of Ggra1892.t1

>Ggra1892.t1 ID=Ggra1892.t1|Name=Ggra1892.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=147bp
MSNHSEKPKRGRPPTYKFNKPDSELSENEKRLKDSVMKRRMRQNRSYHEK
KKLRQLEKQKLLTSSSSSRSLPPSSSSSSSSSSWAPAPQQWTPPPPMSLS
SGYNIVDNRLHIPEELLRLGQLVHDDLTRVQGGSSVFFQEPGHNHK*
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mRNA from alignment at tig00000181_pilon:102574..103014+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1892.t1 ID=Ggra1892.t1|Name=Ggra1892.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=441bp|location=Sequence derived from alignment at tig00000181_pilon:102574..103014+ (Gracilaria gracilis GNS1m male)
ATGTCCAATCACAGTGAGAAGCCAAAAAGAGGGCGCCCCCCAACCTACAA
GTTCAACAAGCCTGACTCTGAGCTGTCAGAAAACGAGAAGCGTCTCAAGG
ACTCCGTCATGAAGCGCCGCATGAGGCAGAACCGCAGCTATCACGAGAAG
AAGAAGCTTCGACAGTTGGAAAAGCAGAAACTGTTAACCTCCAGTTCGTC
GTCTAGGTCGttgcccccatcgtcgtcgtcatcgtcgtcgtcatcCTCAT
GGGCACCTGCTCCTCAGCAGTGGACACCACCACCTCCCATGTCCTTGTCG
TCCGGTTACAACATTGTGGACAACCGTCTCCACATCCCGGAGGAGCTTTT
GAGACTGGGACAACTCGTTCATGACGATTTGACCCGCGTTCAGGGCGGAT
CGTCCGTCTTCTTCCAAGAGCCCGGTCACAACCACAAATGA
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Coding sequence (CDS) from alignment at tig00000181_pilon:102574..103014+

>Ggra1892.t1 ID=Ggra1892.t1|Name=Ggra1892.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=441bp|location=Sequence derived from alignment at tig00000181_pilon:102574..103014+ (Gracilaria gracilis GNS1m male)
ATGTCCAATCACAGTGAGAAGCCAAAAAGAGGGCGCCCCCCAACCTACAA
GTTCAACAAGCCTGACTCTGAGCTGTCAGAAAACGAGAAGCGTCTCAAGG
ACTCCGTCATGAAGCGCCGCATGAGGCAGAACCGCAGCTATCACGAGAAG
AAGAAGCTTCGACAGTTGGAAAAGCAGAAACTGTTAACCTCCAGTTCGTC
GTCTAGGTCGttgcccccatcgtcgtcgtcatcgtcgtcgtcatcCTCAT
GGGCACCTGCTCCTCAGCAGTGGACACCACCACCTCCCATGTCCTTGTCG
TCCGGTTACAACATTGTGGACAACCGTCTCCACATCCCGGAGGAGCTTTT
GAGACTGGGACAACTCGTTCATGACGATTTGACCCGCGTTCAGGGCGGAT
CGTCCGTCTTCTTCCAAGAGCCCGGTCACAACCACAAATGA
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