Ggra1841.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1841.t1
Unique Name	Ggra1841.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	804

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000050_pilon	contig	tig00000050_pilon:843639..846050 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704089.1
PFAMs	SAPS
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K15458,ko:K15499,ko:K15501
Evalue	0.000214
EggNOG OGs	KOG2073@1\|root,KOG2073@2759\|Eukaryota
Description	protein phosphatase binding
COG category	S
BRITE	ko00000,ko01009,ko03016,ko03400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1841	Ggra1841	Gracilaria gracilis GNS1m male	gene	tig00000050_pilon 843639..846050 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1841.t1.start1	Ggra1841.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000050_pilon 843639..843641 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1841.t1.CDS1	Ggra1841.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000050_pilon 843639..846050 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1841.t1.exon1	Ggra1841.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000050_pilon 843639..846050 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1841.t1.stop1	Ggra1841.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000050_pilon 846048..846050 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1841.t1	Ggra1841.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000050_pilon 843639..846050 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000050_pilon:843639..846050+
coding sequence from alignment at tig00000050_pilon:843639..846050+

mRNA sequence

>Ggra1841.t1 ID=Ggra1841.t1|Name=Ggra1841.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=804bp
MDEPSTRPPLPPPASSQPLVAPSLRPTPPSSTTTIPAFYPSPTSVDLTAS
DEAPQPQPDDKPLAADAAPTHSNNHAPIPCAPPAAVAATLPPSSSTSSST
TSLTSAAQPLAPPPPPLPAISVPPPSPALTNVTRAQFEHALHTFLVQQPP
PQQAGPVDYDAMVARLRVLFDHLDGLVEQLPLRTSNTVCDALANPHALTA
LLCLLSDVSAKSSPVIRDVRRAYRYPYITTTILANGTMNIREAFIACKPL
VLQLLSFLDDKVPLLDFVPPCTADAPPQQAPVSPQFTCDNPIIVGNVVQV
LEAYLGTNPEVLLQQIRERPTVIPALVDMLHIGSVPRLLSALIPDRCVDD
VLMMDHGNASFDVAMTNAIALLGSSQIFHLLAHAFVSCTQTIYDNCTNDA
SAPTMEQVHRAEQMAFNVIEVYSNLVKKTLRAVRINAKMSACQYLHVFGN
ASTASTIELILNSGIELFRETELTKTSILEKGLSLTTQLLELVEEDAERR
VASVTGQPPPLDTSALESALKPILRNLMGVLIDIVNRNDGQSGVRLGILE
LFVTCMRVCSEDLMRFIDRTRFGEVALRIMMMHPRCSLIQHVVCRGVESG
LVSPKATVSSASHWLQRCNLAQVIMHLWRSHKGDARWASPKRAQEAPYLS
ALVHLACCTQHFLAMQEDELGATVDVSMNAETRREFEQFCESTLSAIVSD
EATLCGPKPRRRQAMASSVMGRTFGVMTRSSSFGYGFGRRSGVGYSGGTA
HLVRSASAHRFGYVAPVSGLRSRFDDVFVEGGDGEFEAVTSFSGFGDGDD
LLG*

spliced messenger RNA

>Ggra1841.t1 ID=Ggra1841.t1|Name=Ggra1841.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2412bp|location=Sequence derived from alignment at tig00000050_pilon:843639..846050+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGAGCCGTCGACGCGACCCCCTCTTCCCCCCCCGGCCTCGTCGCA
GCCGCTGGTGGCGCCGTCGCTGCGCCCCACCCCGCCCTCCTCCACCACCA
CCATCCCCGCCTTCTACCCCTCGCCCACCTCCGTCGATCTCAccgcctcc
gacgaggcgccgcagccgcagcccgatgacaagccgctcgccgccgacgc
cgcccccaccCACTCCAACAACCACGCCCCAATACCATGCGCCCCGCCcg
ccgccgtcgccgcaaccctgccgccgtcgtcgtcgacgtcgtcgtcgacc
acgtcgctaacctccgccgcgcagccgctcgcgccgccgccgccgcCGCT
GCCCGCCATCTCCGTGCCGCCGCCGTCGCCCGCGCTGACCAACGTCACGC
GCGCGCAGTTTGAGCACGCATTGCACACTTTTCTGGTGCAACAGCCGCCG
CCGCAACAAGCTGGACCGGTCGACTACGACGCCATGGTCGCTCGCCTGCG
CGTGCTGTTCGACCATCTGGACGGGCTGGTGGAGCAGCTGCCGCTGCGCA
CCAGCAACACCGTGTGTGACGCGCTTGCCAATCCGCACGCCCTCACCGCG
CTGCTCTGTCTGCTGTCGGATGTGTCTGCAAAGTCGTCGCCCGTCATTCG
CGATGTGCGCCGCGCCTATCGCTACCCGTACATCACCACCACCATTCTGG
CCAACGGTACTATGAATATTCGCGAGGCGTTCATTGCGTGCAAGCCGCTG
GTGCTGCAGCTGTTGTCGTTTCTGGATGATAAAGTACCTCTGCTTGACTT
TGTTCCACCTTGCACCGCTGACGCGCCGCCGCAACAAGCGCCCGTGTCGC
CGCAGTTTACGTGTGACAACCCAATTATTGTTGGCAATGTGGTGCAGGTA
CTGGAGGCGTATCTGGGAACAAACCCGGAGGTGTTACTGCAGCAGATTCG
GGAGCGACCCACTGTCATTCCCGCGCTGGTGGACATGCTGCACATTGGCT
CTGTTCCGCGCCTGCTCTCTGCGCTCATTCCGGACCGCTGCGTGGACGAT
GTGCTCATGATGGACCATGGCAACGCGTCGTTTGATGTTGCCATGACCAA
CGCCATCGCGTTGCTGGGTTCGTCGCAAATTTTCCACCTGCTGGCGCATG
CGTTTGTGTCGTGTACGCAGACCATTTATGATAATTGTACAAACGACGCT
AGCGCGCCCACGATGGAGCAGGTGCACCGTGCGGAGCAAATGGCGTTTAA
TGTGATTGAAGTGTATAGTAACCTTGTGAAGAAGACGCTGCGCGCGGTGC
GAATCAATGCCAAAATGAGCGCATGTCAGTACCTGCATGTTTTCGGAAAC
GCGTCGACGGCGTCGACCATAGAGCTGATTCTTAATTCTGGCATTGAGCT
GTTCCGCGAGACGGAGCTGACCAAGACGAGCATCCTGGAAAAGGGGCTGT
CTCTGACCACGCAGCTGCTGGAGCTGGTGGAGGAAGACGCGGAGAGAAGG
GTTGCGAGCGTGACGGGACAGCCGCCGCCGTTGGACACGAGCGCACTGGA
AAGTGCGTTGAAGCCGATCTTGCGCAACCTGATGGGCGTGTTGATCGACA
TTGTGAACCGGAACGATGGACAGTCGGGCGTACGGCTGGGCATTCTGGAG
CTGTTTGTGACGTGTATGCGGGTGTGCAGCGAGGATCTGATGCGGTTCAT
CGACCGGACGCGATTTGGCGAGGTGGCGTTGAGGATCATGATGATGCATC
CACGCTGCTCGCTGATTCAGCATGTGGTGTGCCGCGGGGTGGAGAGCGGG
CTGGTTTCTCCAAAGGCTACGGTGAGCTCTGCGAGTCACTGGCTGCAGCG
CTGTAACTTGGCGCAAGTGATTATGCACTTGTGGCGCAGCCACAAGGGCG
ACGCGCGATGGGCGTCGCCAAAAAGGGCGCAAGAGGCGCCGTACCTGTCG
GCATTGGTGCATTTGGCGTGCTGTACGCAGCACTTTTTGGCAATGCAGGA
GGATGAGTTGGGCGCGACGGTGGACGTGTCGATGAACGCGGAGACGCGGC
GCGAGTTTGAGCAGTTTTGTGAGAGCACGCTGAGCGCGATTGTGTCGGAT
GAAGCGACGCTGTGCGGGCCCAAGCCGCGGCGCAGGCAGGCGATGGCGTC
GAGCGTGATGGGACGGACGTTTGGGGTGATGACGCGCTCGTCGTCGTTCG
GGTACGGCTTTGGACGGCGGTCGGGCGTGGGCTACAGCGGCGGCACGGCG
CACCTGGTGCGGTCGGCGAGTGCGCACCGCTTCGGGTACGTGGCGCCGGT
GTCCGGGCTGCGGAGCCGGTTTGACGACGTGTTTGTGGAAGGGGGCGACG
GCGAGTTCGAGGCGGTGACGTCGTTCTCCGGTTTTGGCGACGGCGACGAC
CTACTCGGATGA

protein sequence of Ggra1841.t1

>Ggra1841.t1 ID=Ggra1841.t1|Name=Ggra1841.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=804bp
MDEPSTRPPLPPPASSQPLVAPSLRPTPPSSTTTIPAFYPSPTSVDLTAS
DEAPQPQPDDKPLAADAAPTHSNNHAPIPCAPPAAVAATLPPSSSTSSST
TSLTSAAQPLAPPPPPLPAISVPPPSPALTNVTRAQFEHALHTFLVQQPP
PQQAGPVDYDAMVARLRVLFDHLDGLVEQLPLRTSNTVCDALANPHALTA
LLCLLSDVSAKSSPVIRDVRRAYRYPYITTTILANGTMNIREAFIACKPL
VLQLLSFLDDKVPLLDFVPPCTADAPPQQAPVSPQFTCDNPIIVGNVVQV
LEAYLGTNPEVLLQQIRERPTVIPALVDMLHIGSVPRLLSALIPDRCVDD
VLMMDHGNASFDVAMTNAIALLGSSQIFHLLAHAFVSCTQTIYDNCTNDA
SAPTMEQVHRAEQMAFNVIEVYSNLVKKTLRAVRINAKMSACQYLHVFGN
ASTASTIELILNSGIELFRETELTKTSILEKGLSLTTQLLELVEEDAERR
VASVTGQPPPLDTSALESALKPILRNLMGVLIDIVNRNDGQSGVRLGILE
LFVTCMRVCSEDLMRFIDRTRFGEVALRIMMMHPRCSLIQHVVCRGVESG
LVSPKATVSSASHWLQRCNLAQVIMHLWRSHKGDARWASPKRAQEAPYLS
ALVHLACCTQHFLAMQEDELGATVDVSMNAETRREFEQFCESTLSAIVSD
EATLCGPKPRRRQAMASSVMGRTFGVMTRSSSFGYGFGRRSGVGYSGGTA
HLVRSASAHRFGYVAPVSGLRSRFDDVFVEGGDGEFEAVTSFSGFGDGDD
LLG*

mRNA from alignment at tig00000050_pilon:843639..846050+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1841.t1 ID=Ggra1841.t1|Name=Ggra1841.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2412bp|location=Sequence derived from alignment at tig00000050_pilon:843639..846050+ (Gracilaria gracilis GNS1m male)
ATGGATGAGCCGTCGACGCGACCCCCTCTTCCCCCCCCGGCCTCGTCGCA
GCCGCTGGTGGCGCCGTCGCTGCGCCCCACCCCGCCCTCCTCCACCACCA
CCATCCCCGCCTTCTACCCCTCGCCCACCTCCGTCGATCTCAccgcctcc
gacgaggcgccgcagccgcagcccgatgacaagccgctcgccgccgacgc
cgcccccaccCACTCCAACAACCACGCCCCAATACCATGCGCCCCGCCcg
ccgccgtcgccgcaaccctgccgccgtcgtcgtcgacgtcgtcgtcgacc
acgtcgctaacctccgccgcgcagccgctcgcgccgccgccgccgcCGCT
GCCCGCCATCTCCGTGCCGCCGCCGTCGCCCGCGCTGACCAACGTCACGC
GCGCGCAGTTTGAGCACGCATTGCACACTTTTCTGGTGCAACAGCCGCCG
CCGCAACAAGCTGGACCGGTCGACTACGACGCCATGGTCGCTCGCCTGCG
CGTGCTGTTCGACCATCTGGACGGGCTGGTGGAGCAGCTGCCGCTGCGCA
CCAGCAACACCGTGTGTGACGCGCTTGCCAATCCGCACGCCCTCACCGCG
CTGCTCTGTCTGCTGTCGGATGTGTCTGCAAAGTCGTCGCCCGTCATTCG
CGATGTGCGCCGCGCCTATCGCTACCCGTACATCACCACCACCATTCTGG
CCAACGGTACTATGAATATTCGCGAGGCGTTCATTGCGTGCAAGCCGCTG
GTGCTGCAGCTGTTGTCGTTTCTGGATGATAAAGTACCTCTGCTTGACTT
TGTTCCACCTTGCACCGCTGACGCGCCGCCGCAACAAGCGCCCGTGTCGC
CGCAGTTTACGTGTGACAACCCAATTATTGTTGGCAATGTGGTGCAGGTA
CTGGAGGCGTATCTGGGAACAAACCCGGAGGTGTTACTGCAGCAGATTCG
GGAGCGACCCACTGTCATTCCCGCGCTGGTGGACATGCTGCACATTGGCT
CTGTTCCGCGCCTGCTCTCTGCGCTCATTCCGGACCGCTGCGTGGACGAT
GTGCTCATGATGGACCATGGCAACGCGTCGTTTGATGTTGCCATGACCAA
CGCCATCGCGTTGCTGGGTTCGTCGCAAATTTTCCACCTGCTGGCGCATG
CGTTTGTGTCGTGTACGCAGACCATTTATGATAATTGTACAAACGACGCT
AGCGCGCCCACGATGGAGCAGGTGCACCGTGCGGAGCAAATGGCGTTTAA
TGTGATTGAAGTGTATAGTAACCTTGTGAAGAAGACGCTGCGCGCGGTGC
GAATCAATGCCAAAATGAGCGCATGTCAGTACCTGCATGTTTTCGGAAAC
GCGTCGACGGCGTCGACCATAGAGCTGATTCTTAATTCTGGCATTGAGCT
GTTCCGCGAGACGGAGCTGACCAAGACGAGCATCCTGGAAAAGGGGCTGT
CTCTGACCACGCAGCTGCTGGAGCTGGTGGAGGAAGACGCGGAGAGAAGG
GTTGCGAGCGTGACGGGACAGCCGCCGCCGTTGGACACGAGCGCACTGGA
AAGTGCGTTGAAGCCGATCTTGCGCAACCTGATGGGCGTGTTGATCGACA
TTGTGAACCGGAACGATGGACAGTCGGGCGTACGGCTGGGCATTCTGGAG
CTGTTTGTGACGTGTATGCGGGTGTGCAGCGAGGATCTGATGCGGTTCAT
CGACCGGACGCGATTTGGCGAGGTGGCGTTGAGGATCATGATGATGCATC
CACGCTGCTCGCTGATTCAGCATGTGGTGTGCCGCGGGGTGGAGAGCGGG
CTGGTTTCTCCAAAGGCTACGGTGAGCTCTGCGAGTCACTGGCTGCAGCG
CTGTAACTTGGCGCAAGTGATTATGCACTTGTGGCGCAGCCACAAGGGCG
ACGCGCGATGGGCGTCGCCAAAAAGGGCGCAAGAGGCGCCGTACCTGTCG
GCATTGGTGCATTTGGCGTGCTGTACGCAGCACTTTTTGGCAATGCAGGA
GGATGAGTTGGGCGCGACGGTGGACGTGTCGATGAACGCGGAGACGCGGC
GCGAGTTTGAGCAGTTTTGTGAGAGCACGCTGAGCGCGATTGTGTCGGAT
GAAGCGACGCTGTGCGGGCCCAAGCCGCGGCGCAGGCAGGCGATGGCGTC
GAGCGTGATGGGACGGACGTTTGGGGTGATGACGCGCTCGTCGTCGTTCG
GGTACGGCTTTGGACGGCGGTCGGGCGTGGGCTACAGCGGCGGCACGGCG
CACCTGGTGCGGTCGGCGAGTGCGCACCGCTTCGGGTACGTGGCGCCGGT
GTCCGGGCTGCGGAGCCGGTTTGACGACGTGTTTGTGGAAGGGGGCGACG
GCGAGTTCGAGGCGGTGACGTCGTTCTCCGGTTTTGGCGACGGCGACGAC
CTACTCGGATGA

Coding sequence (CDS) from alignment at tig00000050_pilon:843639..846050+

>Ggra1841.t1 ID=Ggra1841.t1|Name=Ggra1841.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2412bp|location=Sequence derived from alignment at tig00000050_pilon:843639..846050+ (Gracilaria gracilis GNS1m male)
ATGGATGAGCCGTCGACGCGACCCCCTCTTCCCCCCCCGGCCTCGTCGCA
GCCGCTGGTGGCGCCGTCGCTGCGCCCCACCCCGCCCTCCTCCACCACCA
CCATCCCCGCCTTCTACCCCTCGCCCACCTCCGTCGATCTCAccgcctcc
gacgaggcgccgcagccgcagcccgatgacaagccgctcgccgccgacgc
cgcccccaccCACTCCAACAACCACGCCCCAATACCATGCGCCCCGCCcg
ccgccgtcgccgcaaccctgccgccgtcgtcgtcgacgtcgtcgtcgacc
acgtcgctaacctccgccgcgcagccgctcgcgccgccgccgccgcCGCT
GCCCGCCATCTCCGTGCCGCCGCCGTCGCCCGCGCTGACCAACGTCACGC
GCGCGCAGTTTGAGCACGCATTGCACACTTTTCTGGTGCAACAGCCGCCG
CCGCAACAAGCTGGACCGGTCGACTACGACGCCATGGTCGCTCGCCTGCG
CGTGCTGTTCGACCATCTGGACGGGCTGGTGGAGCAGCTGCCGCTGCGCA
CCAGCAACACCGTGTGTGACGCGCTTGCCAATCCGCACGCCCTCACCGCG
CTGCTCTGTCTGCTGTCGGATGTGTCTGCAAAGTCGTCGCCCGTCATTCG
CGATGTGCGCCGCGCCTATCGCTACCCGTACATCACCACCACCATTCTGG
CCAACGGTACTATGAATATTCGCGAGGCGTTCATTGCGTGCAAGCCGCTG
GTGCTGCAGCTGTTGTCGTTTCTGGATGATAAAGTACCTCTGCTTGACTT
TGTTCCACCTTGCACCGCTGACGCGCCGCCGCAACAAGCGCCCGTGTCGC
CGCAGTTTACGTGTGACAACCCAATTATTGTTGGCAATGTGGTGCAGGTA
CTGGAGGCGTATCTGGGAACAAACCCGGAGGTGTTACTGCAGCAGATTCG
GGAGCGACCCACTGTCATTCCCGCGCTGGTGGACATGCTGCACATTGGCT
CTGTTCCGCGCCTGCTCTCTGCGCTCATTCCGGACCGCTGCGTGGACGAT
GTGCTCATGATGGACCATGGCAACGCGTCGTTTGATGTTGCCATGACCAA
CGCCATCGCGTTGCTGGGTTCGTCGCAAATTTTCCACCTGCTGGCGCATG
CGTTTGTGTCGTGTACGCAGACCATTTATGATAATTGTACAAACGACGCT
AGCGCGCCCACGATGGAGCAGGTGCACCGTGCGGAGCAAATGGCGTTTAA
TGTGATTGAAGTGTATAGTAACCTTGTGAAGAAGACGCTGCGCGCGGTGC
GAATCAATGCCAAAATGAGCGCATGTCAGTACCTGCATGTTTTCGGAAAC
GCGTCGACGGCGTCGACCATAGAGCTGATTCTTAATTCTGGCATTGAGCT
GTTCCGCGAGACGGAGCTGACCAAGACGAGCATCCTGGAAAAGGGGCTGT
CTCTGACCACGCAGCTGCTGGAGCTGGTGGAGGAAGACGCGGAGAGAAGG
GTTGCGAGCGTGACGGGACAGCCGCCGCCGTTGGACACGAGCGCACTGGA
AAGTGCGTTGAAGCCGATCTTGCGCAACCTGATGGGCGTGTTGATCGACA
TTGTGAACCGGAACGATGGACAGTCGGGCGTACGGCTGGGCATTCTGGAG
CTGTTTGTGACGTGTATGCGGGTGTGCAGCGAGGATCTGATGCGGTTCAT
CGACCGGACGCGATTTGGCGAGGTGGCGTTGAGGATCATGATGATGCATC
CACGCTGCTCGCTGATTCAGCATGTGGTGTGCCGCGGGGTGGAGAGCGGG
CTGGTTTCTCCAAAGGCTACGGTGAGCTCTGCGAGTCACTGGCTGCAGCG
CTGTAACTTGGCGCAAGTGATTATGCACTTGTGGCGCAGCCACAAGGGCG
ACGCGCGATGGGCGTCGCCAAAAAGGGCGCAAGAGGCGCCGTACCTGTCG
GCATTGGTGCATTTGGCGTGCTGTACGCAGCACTTTTTGGCAATGCAGGA
GGATGAGTTGGGCGCGACGGTGGACGTGTCGATGAACGCGGAGACGCGGC
GCGAGTTTGAGCAGTTTTGTGAGAGCACGCTGAGCGCGATTGTGTCGGAT
GAAGCGACGCTGTGCGGGCCCAAGCCGCGGCGCAGGCAGGCGATGGCGTC
GAGCGTGATGGGACGGACGTTTGGGGTGATGACGCGCTCGTCGTCGTTCG
GGTACGGCTTTGGACGGCGGTCGGGCGTGGGCTACAGCGGCGGCACGGCG
CACCTGGTGCGGTCGGCGAGTGCGCACCGCTTCGGGTACGTGGCGCCGGT
GTCCGGGCTGCGGAGCCGGTTTGACGACGTGTTTGTGGAAGGGGGCGACG
GCGAGTTCGAGGCGGTGACGTCGTTCTCCGGTTTTGGCGACGGCGACGAC
CTACTCGGATGA