Ggra1831.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1831.t1
Unique NameGgra1831.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length294
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:823999..824984 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1831Ggra1831Gracilaria gracilis GNS1m malegenetig00000050_pilon 823999..824984 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1831.t1Ggra1831.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 823999..824984 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1831.t1.stop1Ggra1831.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 823999..824001 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1831.t1.CDS1Ggra1831.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 823999..824453 -
Ggra1831.t1.CDS2Ggra1831.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000050_pilon 824558..824984 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1831.t1.exon1Ggra1831.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 823999..824453 -
Ggra1831.t1.exon2Ggra1831.t1.exon2Gracilaria gracilis GNS1m maleexontig00000050_pilon 824558..824984 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1831.t1.intron1Ggra1831.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000050_pilon 824454..824557 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1831.t1.start1Ggra1831.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 824982..824984 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1831.t1 ID=Ggra1831.t1|Name=Ggra1831.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=294bp
MRPKQRPDWAWLSVALLHGSLSAAHLQLTRRALQLVPARALGALQLGAVG
ASLWFWSLFGLLRARALPPLQVAPLAAARALLTLSTLALLRAAPLPLFAA
LRAAPLAARCTRARALLLLPLLLLPLLLLAAPRAPPPRAPRSPLLLAAAA
ALGGGGGDGGGGGGGGDGGGGGVDARRTWDEVYASRASLMVVCASALSAF
GTFVSARVVLSRCEPRAADAAMVAALAPLALLFAAQPGAPLRNGACLLLA
CAIFGLAFDAVARRHAAVALRSREALDRAPPQQLLPLALSELV*
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spliced messenger RNA

>Ggra1831.t1 ID=Ggra1831.t1|Name=Ggra1831.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=882bp|location=Sequence derived from alignment at tig00000050_pilon:823999..824984- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCCCCAAGCAGCGCCCCGACTGGGCTTGGCTCAGCGTCGCGCTGCT
GCACGGCAGCCTAAGCGCGGCGCACCTACAGCTGACGCGGCGCGCGCTGC
AGCTGGTGCCAGCGCGCGCGCTCGGCGCGTTACAGCTGGGCGCGGTGGGC
GCGTCGCTGTGGTTCTGGTCGCTGTTCGGGCTGCTGCGCGCGCGCGCGCT
GCCGCCGTTGCAGGTGGCGCCGCTGGCGGCGGCGCGCGCCTTGCTCACGC
TGAGCACGCTGGCGCTGCTGCGCGCCGCGCCGCTGCCGCTGTTTGCCGCG
CTGCGCGCCGCGCCGCTCGCGGCGCGCTGCACGCGCGCGCGCGCGCTGCT
GCTGCTGCCGCTGCTGCTGCTGCCGCTGCTGCTGCTCGCCGCGCCGCGCG
CGCCGCCGCCGCGCGCGCCGCGCTCGCCGCTGCTGCTCGCGGCGGCCGCC
GCGTTGGGCGGCGGCGGCGGCGACGGCGGCGGCGGCGGCGGCGGCGGCGA
CGGCGGCGGCGGCGGCGTGGACGCGCGGCGCACGTGGGACGAGGTGTATG
CGAGCCGCGCGTCGCTCATGGTGGTGTGCGCGTCGGCGCTGTCGGCGTTC
GGCACGTTTGTGAGCGCGCGCGTGGTGCTGTCGCGCTGCGAGCCGCGCGC
GGCGGACGCGGCCATGGTGGCGGCGCTCGCGCCGCTGGCGCTGCTGTTTG
CGGCGCAGCCGGGCGCGCCGCTGCGCAACGGCGCGTGCCTGCTGCTGGCT
TGCGCCATCTTTGGCTTGGCGTTTGACGCCGTTGCGCGCCGCCACGCCGC
TGTGGCGCTGCGTTCGCGCGAAGCGCTGGACCGCGCGCCGCCTCAGCAGC
TGCTGCCGCTGGCGCTTTCCGAGCTTGTTTGA
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protein sequence of Ggra1831.t1

>Ggra1831.t1 ID=Ggra1831.t1|Name=Ggra1831.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=294bp
MRPKQRPDWAWLSVALLHGSLSAAHLQLTRRALQLVPARALGALQLGAVG
ASLWFWSLFGLLRARALPPLQVAPLAAARALLTLSTLALLRAAPLPLFAA
LRAAPLAARCTRARALLLLPLLLLPLLLLAAPRAPPPRAPRSPLLLAAAA
ALGGGGGDGGGGGGGGDGGGGGVDARRTWDEVYASRASLMVVCASALSAF
GTFVSARVVLSRCEPRAADAAMVAALAPLALLFAAQPGAPLRNGACLLLA
CAIFGLAFDAVARRHAAVALRSREALDRAPPQQLLPLALSELV*
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mRNA from alignment at tig00000050_pilon:823999..824984-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1831.t1 ID=Ggra1831.t1|Name=Ggra1831.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=986bp|location=Sequence derived from alignment at tig00000050_pilon:823999..824984- (Gracilaria gracilis GNS1m male)
ATGCGCCCCAAGCAGCGCCCCGACTGGGCTTGGCTCAGCGTCGCGCTGCT
GCACGGCAGCCTAAGCGCGGCGCACCTACAGCTGACGCGGCGCGCGCTGC
AGCTGGTGCCAGCGCGCGCGCTCGGCGCGTTACAGCTGGGCGCGGTGGGC
GCGTCGCTGTGGTTCTGGTCGCTGTTCGGGCTGCTGCGCGCGCGCGCGCT
GCCGCCGTTGCAGGTGGCGCCGCTGGCGGCGGCGCGCGCCTTGCTCACGC
TGAGCACGCTGGCGCTGCTGCGCGCCGCGCCGCTGCCGCTGTTTGCCGCG
CTGCGCGCCGCGCCGCTCGCGGCGCGCTGCACGCGCGCGCGCGCGCTGCT
GCTGCTGCCGCTGCTGCTGCTGCCGCTGCTGCTGCTCGCCGCGCCGCGCG
CGCCGCCGCCGCGCGCGCCGCGCTCGCGTACGGCGTGGCGGCCGAGGTGG
CGGCGCGCGTCAACGCGCGCTGCGCGCCGCGCGTGGCGGCCACCGAGCTG
CAGCTGTCGCTGTGGAGCAAGTCGGCGTCAGCGCTGCTGCTCGCGGCGGC
CGCCGCGTTGGGCGGCGGCGGCGGCGACGGCGGCGGCGGCGGCGGCGGCG
GCGACGGCGGCGGCGGCGGCGTGGACGCGCGGCGCACGTGGGACGAGGTG
TATGCGAGCCGCGCGTCGCTCATGGTGGTGTGCGCGTCGGCGCTGTCGGC
GTTCGGCACGTTTGTGAGCGCGCGCGTGGTGCTGTCGCGCTGCGAGCCGC
GCGCGGCGGACGCGGCCATGGTGGCGGCGCTCGCGCCGCTGGCGCTGCTG
TTTGCGGCGCAGCCGGGCGCGCCGCTGCGCAACGGCGCGTGCCTGCTGCT
GGCTTGCGCCATCTTTGGCTTGGCGTTTGACGCCGTTGCGCGCCGCCACG
CCGCTGTGGCGCTGCGTTCGCGCGAAGCGCTGGACCGCGCGCCGCCTCAG
CAGCTGCTGCCGCTGGCGCTTTCCGAGCTTGTTTGA
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Coding sequence (CDS) from alignment at tig00000050_pilon:823999..824984-

>Ggra1831.t1 ID=Ggra1831.t1|Name=Ggra1831.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=882bp|location=Sequence derived from alignment at tig00000050_pilon:823999..824984- (Gracilaria gracilis GNS1m male)
ATGCGCCCCAAGCAGCGCCCCGACTGGGCTTGGCTCAGCGTCGCGCTGCT
GCACGGCAGCCTAAGCGCGGCGCACCTACAGCTGACGCGGCGCGCGCTGC
AGCTGGTGCCAGCGCGCGCGCTCGGCGCGTTACAGCTGGGCGCGGTGGGC
GCGTCGCTGTGGTTCTGGTCGCTGTTCGGGCTGCTGCGCGCGCGCGCGCT
GCCGCCGTTGCAGGTGGCGCCGCTGGCGGCGGCGCGCGCCTTGCTCACGC
TGAGCACGCTGGCGCTGCTGCGCGCCGCGCCGCTGCCGCTGTTTGCCGCG
CTGCGCGCCGCGCCGCTCGCGGCGCGCTGCACGCGCGCGCGCGCGCTGCT
GCTGCTGCCGCTGCTGCTGCTGCCGCTGCTGCTGCTCGCCGCGCCGCGCG
CGCCGCCGCCGCGCGCGCCGCGCTCGCCGCTGCTGCTCGCGGCGGCCGCC
GCGTTGGGCGGCGGCGGCGGCGACGGCGGCGGCGGCGGCGGCGGCGGCGA
CGGCGGCGGCGGCGGCGTGGACGCGCGGCGCACGTGGGACGAGGTGTATG
CGAGCCGCGCGTCGCTCATGGTGGTGTGCGCGTCGGCGCTGTCGGCGTTC
GGCACGTTTGTGAGCGCGCGCGTGGTGCTGTCGCGCTGCGAGCCGCGCGC
GGCGGACGCGGCCATGGTGGCGGCGCTCGCGCCGCTGGCGCTGCTGTTTG
CGGCGCAGCCGGGCGCGCCGCTGCGCAACGGCGCGTGCCTGCTGCTGGCT
TGCGCCATCTTTGGCTTGGCGTTTGACGCCGTTGCGCGCCGCCACGCCGC
TGTGGCGCTGCGTTCGCGCGAAGCGCTGGACCGCGCGCCGCCTCAGCAGC
TGCTGCCGCTGGCGCTTTCCGAGCTTGTTTGA
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