Ggra1827.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1827.t1
Unique NameGgra1827.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length217
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:817274..818157 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702723.1
PFAMsCullin_binding,UBA_4
Max annot lvl2759|Eukaryota
KEGG rclassRC00005
KEGG koko:K00721,ko:K17822
KEGG ReactionR01009
KEGG Pathwayko00510,ko01100,map00510,map01100
Evalue4.45e-58
EggNOG OGsKOG3077@1|root,KOG3077@2759|Eukaryota
EC2.4.1.83
Descriptioncullin family protein binding
COG categoryS
CAZyGT2
BRITEko00000,ko00001,ko01000,ko01003,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1827Ggra1827Gracilaria gracilis GNS1m malegenetig00000050_pilon 817274..818157 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1827.t1Ggra1827.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 817274..818157 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1827.t1.stop1Ggra1827.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 817274..817276 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1827.t1.CDS1Ggra1827.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 817274..817626 -
Ggra1827.t1.CDS2Ggra1827.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000050_pilon 817712..817903 -
Ggra1827.t1.CDS3Ggra1827.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000050_pilon 818052..818157 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1827.t1.exon1Ggra1827.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 817274..817626 -
Ggra1827.t1.exon2Ggra1827.t1.exon2Gracilaria gracilis GNS1m maleexontig00000050_pilon 817712..817903 -
Ggra1827.t1.exon3Ggra1827.t1.exon3Gracilaria gracilis GNS1m maleexontig00000050_pilon 818052..818157 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1827.t1.intron1Ggra1827.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000050_pilon 817627..817711 -
Ggra1827.t1.intron2Ggra1827.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000050_pilon 817904..818051 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1827.t1.start1Ggra1827.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 818155..818157 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1827.t1 ID=Ggra1827.t1|Name=Ggra1827.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=217bp
MRRGFNRVSRLQSSARPAVDYGAIEQMFNSCRDADAEKVGPEGIQALFER
LEIDILDISTLIFAWKLQAKVPFEFSKKEFVDGCANLRADSWDKLKKVIP
SLKAAITDAKDFRSFYMYAFEYNKPPEQRSLPIETARQLFPLIFAGRFKH
LDLWMDFLKNRRQAISRDTYTLLLDFVNTIDESMSNYDEENGAWPVLLDE
FVDFAKPRLNKSNMQQ*
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spliced messenger RNA

>Ggra1827.t1 ID=Ggra1827.t1|Name=Ggra1827.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=651bp|location=Sequence derived from alignment at tig00000050_pilon:817274..818157- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGCGCGGCTTTAATCGCGTTTCCAGGCTGCAGTCTTCGGCCAGACC
GGCTGTGGACTATGGCGCCATCGAGCAAATGTTCAATTCGTGCCGCGATG
CAGACGCGGAGAAGGTGGGTCCGGAGGGAATCCAGGCGCTGTTTGAACGC
CTCGAAATAGATATTCTGGACATTTCCACCTTGATATTTGCGTGGAAGCT
GCAAGCAAAGGTACCGTTTGAGTTTTCGAAGAAGGAGTTCGTGGATGGAT
GTGCCAACCTGCGCGCCGATTCATGGGACAAGCTCAAGAAAGTAATACCG
TCGTTGAAAGCGGCCATCACGGACGCAAAGGACTTTCGTAGCTTCTACAT
GTATGCGTTTGAGTACAACAAGCCGCCAGAGCAGAGGAGTTTGCCCATTG
AAACTGCCAGACAACTGTTCCCGCTCATATTCGCGGGCCGTTTCAAACAC
TTGGATCTGTGGATGGACTTTCTGAAGAACCGACGTCAGGCGATTTCGAG
GGACACGTACACGCTGTTGCTGGATTTCGTGAATACTATCGACGAGAGTA
TGAGTAATTATGATGAGGAGAACGGCGCGTGGCCGGTGCTGCTGGACGAG
TTTGTAGATTTCGCAAAGCCTAGACTGAACAAGAGTAATATGCAACAATG
A
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protein sequence of Ggra1827.t1

>Ggra1827.t1 ID=Ggra1827.t1|Name=Ggra1827.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=217bp
MRRGFNRVSRLQSSARPAVDYGAIEQMFNSCRDADAEKVGPEGIQALFER
LEIDILDISTLIFAWKLQAKVPFEFSKKEFVDGCANLRADSWDKLKKVIP
SLKAAITDAKDFRSFYMYAFEYNKPPEQRSLPIETARQLFPLIFAGRFKH
LDLWMDFLKNRRQAISRDTYTLLLDFVNTIDESMSNYDEENGAWPVLLDE
FVDFAKPRLNKSNMQQ*
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mRNA from alignment at tig00000050_pilon:817274..818157-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1827.t1 ID=Ggra1827.t1|Name=Ggra1827.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=884bp|location=Sequence derived from alignment at tig00000050_pilon:817274..818157- (Gracilaria gracilis GNS1m male)
ATGAGGCGCGGCTTTAATCGCGTTTCCAGGCTGCAGTCTTCGGCCAGACC
GGCTGTGGACTATGGCGCCATCGAGCAAATGTTCAATTCGTGCCGCGATG
CAGACGGTGCGTTGCTGCGCCCTCTTTCTCCCTCTCTCTCTCCCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTACTCTGTCATTTTGCACC
GACGCGCTTGTGAGGACTGACGTTTTGTGCGCTTTTTGTCGCCGCATTGA
GCAGCGGAGAAGGTGGGTCCGGAGGGAATCCAGGCGCTGTTTGAACGCCT
CGAAATAGATATTCTGGACATTTCCACCTTGATATTTGCGTGGAAGCTGC
AAGCAAAGGTACCGTTTGAGTTTTCGAAGAAGGAGTTCGTGGATGGATGT
GCCAACCTGCGCGCCGATTCATGGGACAAGCTCAAGAAAGTAATACGTAA
GTTGCCATGCAAGCACCAGTTGCAATCACATAACAGTAAAGCGAATGCTG
ACCATTCAATTGCCATCCAATTGCCAAGCAGCGTCGTTGAAAGCGGCCAT
CACGGACGCAAAGGACTTTCGTAGCTTCTACATGTATGCGTTTGAGTACA
ACAAGCCGCCAGAGCAGAGGAGTTTGCCCATTGAAACTGCCAGACAACTG
TTCCCGCTCATATTCGCGGGCCGTTTCAAACACTTGGATCTGTGGATGGA
CTTTCTGAAGAACCGACGTCAGGCGATTTCGAGGGACACGTACACGCTGT
TGCTGGATTTCGTGAATACTATCGACGAGAGTATGAGTAATTATGATGAG
GAGAACGGCGCGTGGCCGGTGCTGCTGGACGAGTTTGTAGATTTCGCAAA
GCCTAGACTGAACAAGAGTAATATGCAACAATGA
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Coding sequence (CDS) from alignment at tig00000050_pilon:817274..818157-

>Ggra1827.t1 ID=Ggra1827.t1|Name=Ggra1827.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=651bp|location=Sequence derived from alignment at tig00000050_pilon:817274..818157- (Gracilaria gracilis GNS1m male)
ATGAGGCGCGGCTTTAATCGCGTTTCCAGGCTGCAGTCTTCGGCCAGACC
GGCTGTGGACTATGGCGCCATCGAGCAAATGTTCAATTCGTGCCGCGATG
CAGACGCGGAGAAGGTGGGTCCGGAGGGAATCCAGGCGCTGTTTGAACGC
CTCGAAATAGATATTCTGGACATTTCCACCTTGATATTTGCGTGGAAGCT
GCAAGCAAAGGTACCGTTTGAGTTTTCGAAGAAGGAGTTCGTGGATGGAT
GTGCCAACCTGCGCGCCGATTCATGGGACAAGCTCAAGAAAGTAATACCG
TCGTTGAAAGCGGCCATCACGGACGCAAAGGACTTTCGTAGCTTCTACAT
GTATGCGTTTGAGTACAACAAGCCGCCAGAGCAGAGGAGTTTGCCCATTG
AAACTGCCAGACAACTGTTCCCGCTCATATTCGCGGGCCGTTTCAAACAC
TTGGATCTGTGGATGGACTTTCTGAAGAACCGACGTCAGGCGATTTCGAG
GGACACGTACACGCTGTTGCTGGATTTCGTGAATACTATCGACGAGAGTA
TGAGTAATTATGATGAGGAGAACGGCGCGTGGCCGGTGCTGCTGGACGAG
TTTGTAGATTTCGCAAAGCCTAGACTGAACAAGAGTAATATGCAACAATG
A
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