Ggra1825.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1825.t1
Unique NameGgra1825.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length117
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:815682..816032 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705334.1
PFAMsRRM_1
Max annot lvl2759|Eukaryota
KEGG koko:K09564
KEGG Pathwayko03040,map03040
KEGG ModuleM00355
GOsGO:0000375,GO:0000377,GO:0000398,GO:0000413,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003729,GO:0003755,GO:0003824,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006355,GO:0006396,GO:0006397,GO:0006464,GO:0006725,GO:0006807,GO:0006810,GO:0006887,GO:0006950,GO:0006955,GO:0006974,GO:0008143,GO:0008144,GO:0008150,GO:0008152,GO:0008380,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0012505,GO:0016018,GO:0016070,GO:0016071,GO:0016192,GO:0016604,GO:0016607,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019219,GO:0019222,GO:0019538,GO:0030141,GO:0031323,GO:0031326,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0032940,GO:0032991,GO:0033218,GO:0033554,GO:0034641,GO:0034774,GO:0036211,GO:0036230,GO:0042119,GO:0042277,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043412,GO:0043900,GO:0043902,GO:0043903,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044433,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045055,GO:0045069,GO:0045070,GO:0045321,GO:0046483,GO:0046903,GO:0048518,GO:0048524,GO:0050789,GO:0050792,GO:0050794,GO:0050896,GO:0051171,GO:0051179,GO:0051234,GO:0051252,GO:0051716,GO:0060205,GO:0060255,GO:0065007,GO:0070013,GO:0070717,GO:0071007,GO:0071013,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097708,GO:0099503,GO:0101002,GO:0140096,GO:1901360,GO:1901363,GO:1901564,GO:1902494,GO:1903506,GO:1903900,GO:1903902,GO:1904813,GO:1990904,GO:2000112,GO:2001141
Evalue3.21e-15
EggNOG OGsCOG0652@1|root,KOG0111@2759|Eukaryota
EC5.2.1.8
Descriptionpeptidyl-prolyl cis-trans isomerase activity
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1825Ggra1825Gracilaria gracilis GNS1m malegenetig00000050_pilon 815682..816032 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1825.t1.stop1Ggra1825.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 815682..815684 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1825.t1.CDS1Ggra1825.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 815682..816032 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1825.t1.exon1Ggra1825.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 815682..816032 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1825.t1.start1Ggra1825.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 816030..816032 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1825.t1Ggra1825.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 815682..816032 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1825.t1 ID=Ggra1825.t1|Name=Ggra1825.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=117bp
MDDAAVISPSKPALHRSPTDGMSSRHLYVHHLPPATTEDALRSLFIPYGD
LADLHLPLQPASSANRGYAFVSFEQPDDAKHAQLNLDKAQFLGMVIRVKS
TAARRHADPLHASSSS*
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spliced messenger RNA

>Ggra1825.t1 ID=Ggra1825.t1|Name=Ggra1825.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=351bp|location=Sequence derived from alignment at tig00000050_pilon:815682..816032- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGATGCGGCCGTCATTTCTCCTTCCAAACCCGCTCTGCACCGTTC
GCCGACAGACGGAATGTCATCACGTCACCTTTACGTGCACCACCTGCCAC
CCGCCACCACTGAAGACGCGCTCCGAAGCCTCTTCATCCCGTACGGCGAC
CTCGCCGACCTGCATCTGCCGCTGCAGCCGGCCAGTTCCGCAAACCGCGG
CTACGCCTTCGTCAGCTTCGAGCAGCCTGACGACGCAAAACACGCCCAGC
TTAACCTCGACAAGGCACAGTTCCTGGGCATGGTTATCCGCGTCAAGAGT
ACCGCCGCGCGACGCCACGCCGACCCACTACATGCGTCATCATCATCGTA
G
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protein sequence of Ggra1825.t1

>Ggra1825.t1 ID=Ggra1825.t1|Name=Ggra1825.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=117bp
MDDAAVISPSKPALHRSPTDGMSSRHLYVHHLPPATTEDALRSLFIPYGD
LADLHLPLQPASSANRGYAFVSFEQPDDAKHAQLNLDKAQFLGMVIRVKS
TAARRHADPLHASSSS*
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mRNA from alignment at tig00000050_pilon:815682..816032-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1825.t1 ID=Ggra1825.t1|Name=Ggra1825.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=351bp|location=Sequence derived from alignment at tig00000050_pilon:815682..816032- (Gracilaria gracilis GNS1m male)
ATGGACGATGCGGCCGTCATTTCTCCTTCCAAACCCGCTCTGCACCGTTC
GCCGACAGACGGAATGTCATCACGTCACCTTTACGTGCACCACCTGCCAC
CCGCCACCACTGAAGACGCGCTCCGAAGCCTCTTCATCCCGTACGGCGAC
CTCGCCGACCTGCATCTGCCGCTGCAGCCGGCCAGTTCCGCAAACCGCGG
CTACGCCTTCGTCAGCTTCGAGCAGCCTGACGACGCAAAACACGCCCAGC
TTAACCTCGACAAGGCACAGTTCCTGGGCATGGTTATCCGCGTCAAGAGT
ACCGCCGCGCGACGCCACGCCGACCCACTACATGCGTCATCATCATCGTA
G
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Coding sequence (CDS) from alignment at tig00000050_pilon:815682..816032-

>Ggra1825.t1 ID=Ggra1825.t1|Name=Ggra1825.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=351bp|location=Sequence derived from alignment at tig00000050_pilon:815682..816032- (Gracilaria gracilis GNS1m male)
ATGGACGATGCGGCCGTCATTTCTCCTTCCAAACCCGCTCTGCACCGTTC
GCCGACAGACGGAATGTCATCACGTCACCTTTACGTGCACCACCTGCCAC
CCGCCACCACTGAAGACGCGCTCCGAAGCCTCTTCATCCCGTACGGCGAC
CTCGCCGACCTGCATCTGCCGCTGCAGCCGGCCAGTTCCGCAAACCGCGG
CTACGCCTTCGTCAGCTTCGAGCAGCCTGACGACGCAAAACACGCCCAGC
TTAACCTCGACAAGGCACAGTTCCTGGGCATGGTTATCCGCGTCAAGAGT
ACCGCCGCGCGACGCCACGCCGACCCACTACATGCGTCATCATCATCGTA
G
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