Ggra1823.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1823.t1
Unique NameGgra1823.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length440
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:766073..767454 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1823Ggra1823Gracilaria gracilis GNS1m malegenetig00000050_pilon 766073..767454 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1823.t1Ggra1823.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 766073..767454 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1823.t1.start1Ggra1823.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 766073..766075 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1823.t1.CDS1Ggra1823.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 766073..766086 +
Ggra1823.t1.CDS2Ggra1823.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000050_pilon 766149..767454 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1823.t1.exon1Ggra1823.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 766073..766086 +
Ggra1823.t1.exon2Ggra1823.t1.exon2Gracilaria gracilis GNS1m maleexontig00000050_pilon 766149..767454 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1823.t1.intron1Ggra1823.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000050_pilon 766087..766148 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1823.t1.stop1Ggra1823.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 767452..767454 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1823.t1 ID=Ggra1823.t1|Name=Ggra1823.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=440bp
MRQQAFDRGNHPQIENDEVPSNVIDPELAEASLVSGRLADGVARRRTGFS
AGNSVGRIPEDQSPLEPAFVGNQHGVTGRSTRRMELADAAMVRLGSMPAS
RGILRSAELLSDYAWSGRTGATRNSQWRAWVEFCTAENRTILPVTEGHMI
AFVGWLASERENGTRNVSSASLPQYFSAVRQMQIALTGTPVPGFPFLAHV
VRAYARWEEQQYPQAKVRCGVPASVVQAVWGLGMATTSLAVLRDSAMVVF
AYCLNGLRDSSVTTALATNINMTDDSILVRLSVVKGKPASQVQLVQYRRV
SNSPSPVDLWQRFCHARGNHECFFGLQGERNPLSEQMTTRALLRCLDMLN
ISPPPGGKYSSHSLRICAHTEQVLLGFPLELRLARFGWGVNGGAEMAATY
FDRTIEISPASFWVFGHPTMGRPASTAQSNAAGADATEH*
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spliced messenger RNA

>Ggra1823.t1 ID=Ggra1823.t1|Name=Ggra1823.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1320bp|location=Sequence derived from alignment at tig00000050_pilon:766073..767454+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGCAGCAGGCATTTGATCGCGGCAACCATCCACAAATTGAGAACGA
CGAAGTCCCCAGCAATGTTATTGATCCCGAACTGGCCGAGGCAAGCCTGG
TGTCAGGACGCCTTGCGGATGGCGTCGCGCGTCGAAGAACTGGATTCTCC
GCCGGAAACAGTGTGGGAAGGATACCGGAAGATCAATCCCCGTTGGAGCC
TGCTTTTGTTGGAAATCAACATGGAGTAACTGGGCGTTCCACTCGTCGCA
TGGAACTAGCAGATGCTGCCATGGTACGACTTGGCTCCATGCCAGCAAGC
AGGGGTATTCTCCGGTCAGCCGAGCTGCTGTCTGACTACGCGTGGAGCGG
ACGCACGGGGGCTACGCGTAATTCCCAATGGCGTGCGTGGGTAGAGTTCT
GTACGGCGGAGAACCGGACGATCCTCCCCGTAACCGAAGGGCACATGATA
GCATTCGTGGGATGGCTCGCGTCGGAACGCGAGAACGGAACTCGGAATGT
CAGTAGTGCGTCGTTGCCGCAATACTTCAGTGCCGTTCGGCAAATGCAAA
TAGCATTGACCGGCACTCCAGTTCCGGGATTCCCGTTTCTGGCGCATGTT
GTGCGGGCCTACGCGCGGTGGGAGGAGCAACAGTATCCACAGGCGAAAGT
GAGGTGCGGTGTTCCGGCCAGTGTTGTCCAGGCTGTGTGGGGCTTAGGCA
TGGCCACTACCTCGCTCGCAGTTCTCCGAGATTCTGCAATGGTAGTGTTC
GCCTACTGTCTGAATGGGTTGCGTGATAGTTCCGTCACCACTGCCTTGGC
TACCAATATCAATATGACCGACGACTCGATCCTGGTACGTCTGAGTGTGG
TGAAAGGCAAGCCGGCAAGCCAAGTCCAGTTGGTGCAGTATCGTCGGGTG
TCTAACTCCCCTTCGCCAGTGGACCTGTGGCAGCGTTTTTGTCATGCGCG
CGGTAACCATGAATGTTTCTTCGGCCTGCAAGGAGAGCGCAATCCATTGT
CCGAACAAATGACTACGCGGGCGTTACTGCGCTGCCTCGATATGCTCAAT
ATTAGTCCACCCCCAGGTGGAAAATATTCATCACATTCGCTCCGCATCTG
CGCGCATACAGAACAAGTGTTGTTAGGATTTCCTTTGGAACTTCGCTTGG
CTCGCTTTGGTTGGGGTGTGAATGGGGGCGCGGAAATGGCAGCGACCTAT
TTCGATCGGACTATAGAAATCTCTCCTGCATCGTTCTGGGTGTTCGGGCA
TCCGACGATGGGGAGGCCCGCTTCCACCGCGCAATCTAACGCGGCCGGCG
CTGATGCTACGGAACATTAA
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protein sequence of Ggra1823.t1

>Ggra1823.t1 ID=Ggra1823.t1|Name=Ggra1823.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=440bp
MRQQAFDRGNHPQIENDEVPSNVIDPELAEASLVSGRLADGVARRRTGFS
AGNSVGRIPEDQSPLEPAFVGNQHGVTGRSTRRMELADAAMVRLGSMPAS
RGILRSAELLSDYAWSGRTGATRNSQWRAWVEFCTAENRTILPVTEGHMI
AFVGWLASERENGTRNVSSASLPQYFSAVRQMQIALTGTPVPGFPFLAHV
VRAYARWEEQQYPQAKVRCGVPASVVQAVWGLGMATTSLAVLRDSAMVVF
AYCLNGLRDSSVTTALATNINMTDDSILVRLSVVKGKPASQVQLVQYRRV
SNSPSPVDLWQRFCHARGNHECFFGLQGERNPLSEQMTTRALLRCLDMLN
ISPPPGGKYSSHSLRICAHTEQVLLGFPLELRLARFGWGVNGGAEMAATY
FDRTIEISPASFWVFGHPTMGRPASTAQSNAAGADATEH*
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mRNA from alignment at tig00000050_pilon:766073..767454+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1823.t1 ID=Ggra1823.t1|Name=Ggra1823.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1382bp|location=Sequence derived from alignment at tig00000050_pilon:766073..767454+ (Gracilaria gracilis GNS1m male)
ATGCGGCAGCAGGCGTACGCCGAGTTGGCTTCCGTCTGGAACCCGGAAGA
AGTTCGCTTACTCTGCCCACCGATAGATTTGATCGCGGCAACCATCCACA
AATTGAGAACGACGAAGTCCCCAGCAATGTTATTGATCCCGAACTGGCCG
AGGCAAGCCTGGTGTCAGGACGCCTTGCGGATGGCGTCGCGCGTCGAAGA
ACTGGATTCTCCGCCGGAAACAGTGTGGGAAGGATACCGGAAGATCAATC
CCCGTTGGAGCCTGCTTTTGTTGGAAATCAACATGGAGTAACTGGGCGTT
CCACTCGTCGCATGGAACTAGCAGATGCTGCCATGGTACGACTTGGCTCC
ATGCCAGCAAGCAGGGGTATTCTCCGGTCAGCCGAGCTGCTGTCTGACTA
CGCGTGGAGCGGACGCACGGGGGCTACGCGTAATTCCCAATGGCGTGCGT
GGGTAGAGTTCTGTACGGCGGAGAACCGGACGATCCTCCCCGTAACCGAA
GGGCACATGATAGCATTCGTGGGATGGCTCGCGTCGGAACGCGAGAACGG
AACTCGGAATGTCAGTAGTGCGTCGTTGCCGCAATACTTCAGTGCCGTTC
GGCAAATGCAAATAGCATTGACCGGCACTCCAGTTCCGGGATTCCCGTTT
CTGGCGCATGTTGTGCGGGCCTACGCGCGGTGGGAGGAGCAACAGTATCC
ACAGGCGAAAGTGAGGTGCGGTGTTCCGGCCAGTGTTGTCCAGGCTGTGT
GGGGCTTAGGCATGGCCACTACCTCGCTCGCAGTTCTCCGAGATTCTGCA
ATGGTAGTGTTCGCCTACTGTCTGAATGGGTTGCGTGATAGTTCCGTCAC
CACTGCCTTGGCTACCAATATCAATATGACCGACGACTCGATCCTGGTAC
GTCTGAGTGTGGTGAAAGGCAAGCCGGCAAGCCAAGTCCAGTTGGTGCAG
TATCGTCGGGTGTCTAACTCCCCTTCGCCAGTGGACCTGTGGCAGCGTTT
TTGTCATGCGCGCGGTAACCATGAATGTTTCTTCGGCCTGCAAGGAGAGC
GCAATCCATTGTCCGAACAAATGACTACGCGGGCGTTACTGCGCTGCCTC
GATATGCTCAATATTAGTCCACCCCCAGGTGGAAAATATTCATCACATTC
GCTCCGCATCTGCGCGCATACAGAACAAGTGTTGTTAGGATTTCCTTTGG
AACTTCGCTTGGCTCGCTTTGGTTGGGGTGTGAATGGGGGCGCGGAAATG
GCAGCGACCTATTTCGATCGGACTATAGAAATCTCTCCTGCATCGTTCTG
GGTGTTCGGGCATCCGACGATGGGGAGGCCCGCTTCCACCGCGCAATCTA
ACGCGGCCGGCGCTGATGCTACGGAACATTAA
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Coding sequence (CDS) from alignment at tig00000050_pilon:766073..767454+

>Ggra1823.t1 ID=Ggra1823.t1|Name=Ggra1823.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1320bp|location=Sequence derived from alignment at tig00000050_pilon:766073..767454+ (Gracilaria gracilis GNS1m male)
ATGCGGCAGCAGGCATTTGATCGCGGCAACCATCCACAAATTGAGAACGA
CGAAGTCCCCAGCAATGTTATTGATCCCGAACTGGCCGAGGCAAGCCTGG
TGTCAGGACGCCTTGCGGATGGCGTCGCGCGTCGAAGAACTGGATTCTCC
GCCGGAAACAGTGTGGGAAGGATACCGGAAGATCAATCCCCGTTGGAGCC
TGCTTTTGTTGGAAATCAACATGGAGTAACTGGGCGTTCCACTCGTCGCA
TGGAACTAGCAGATGCTGCCATGGTACGACTTGGCTCCATGCCAGCAAGC
AGGGGTATTCTCCGGTCAGCCGAGCTGCTGTCTGACTACGCGTGGAGCGG
ACGCACGGGGGCTACGCGTAATTCCCAATGGCGTGCGTGGGTAGAGTTCT
GTACGGCGGAGAACCGGACGATCCTCCCCGTAACCGAAGGGCACATGATA
GCATTCGTGGGATGGCTCGCGTCGGAACGCGAGAACGGAACTCGGAATGT
CAGTAGTGCGTCGTTGCCGCAATACTTCAGTGCCGTTCGGCAAATGCAAA
TAGCATTGACCGGCACTCCAGTTCCGGGATTCCCGTTTCTGGCGCATGTT
GTGCGGGCCTACGCGCGGTGGGAGGAGCAACAGTATCCACAGGCGAAAGT
GAGGTGCGGTGTTCCGGCCAGTGTTGTCCAGGCTGTGTGGGGCTTAGGCA
TGGCCACTACCTCGCTCGCAGTTCTCCGAGATTCTGCAATGGTAGTGTTC
GCCTACTGTCTGAATGGGTTGCGTGATAGTTCCGTCACCACTGCCTTGGC
TACCAATATCAATATGACCGACGACTCGATCCTGGTACGTCTGAGTGTGG
TGAAAGGCAAGCCGGCAAGCCAAGTCCAGTTGGTGCAGTATCGTCGGGTG
TCTAACTCCCCTTCGCCAGTGGACCTGTGGCAGCGTTTTTGTCATGCGCG
CGGTAACCATGAATGTTTCTTCGGCCTGCAAGGAGAGCGCAATCCATTGT
CCGAACAAATGACTACGCGGGCGTTACTGCGCTGCCTCGATATGCTCAAT
ATTAGTCCACCCCCAGGTGGAAAATATTCATCACATTCGCTCCGCATCTG
CGCGCATACAGAACAAGTGTTGTTAGGATTTCCTTTGGAACTTCGCTTGG
CTCGCTTTGGTTGGGGTGTGAATGGGGGCGCGGAAATGGCAGCGACCTAT
TTCGATCGGACTATAGAAATCTCTCCTGCATCGTTCTGGGTGTTCGGGCA
TCCGACGATGGGGAGGCCCGCTTCCACCGCGCAATCTAACGCGGCCGGCG
CTGATGCTACGGAACATTAA
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