Ggra1820.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1820.t1
Unique NameGgra1820.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length741
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:757919..760141 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog159749.K0RN92
Preferred nameCMPK2
PFAMsThymidylate_kin
Max annot lvl2759|Eukaryota
KEGG rclassRC00002
KEGG koko:K13809
KEGG ReactionR00158,R00512,R01665
KEGG Pathwayko00240,ko01100,map00240,map01100
KEGG ModuleM00052
GOsGO:0002237,GO:0003674,GO:0003824,GO:0004127,GO:0004550,GO:0004798,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006139,GO:0006165,GO:0006220,GO:0006221,GO:0006227,GO:0006233,GO:0006235,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009165,GO:0009186,GO:0009189,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009219,GO:0009221,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009605,GO:0009607,GO:0009617,GO:0009987,GO:0010033,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0032496,GO:0033862,GO:0033993,GO:0034641,GO:0034654,GO:0042221,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046072,GO:0046075,GO:0046077,GO:0046385,GO:0046483,GO:0046939,GO:0046940,GO:0050145,GO:0050896,GO:0051704,GO:0051707,GO:0051716,GO:0055086,GO:0070887,GO:0071216,GO:0071219,GO:0071222,GO:0071310,GO:0071396,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901700,GO:1901701
Evalue4.04e-92
EggNOG OGsCOG0125@1|root,KOG3327@2759|Eukaryota,2XDRK@2836|Bacillariophyta
EC2.7.4.14
DescriptiondTDP metabolic process
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1820Ggra1820Gracilaria gracilis GNS1m malegenetig00000050_pilon 757919..760141 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1820.t1.start1Ggra1820.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 757919..757921 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1820.t1.CDS1Ggra1820.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 757919..760141 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1820.t1.exon1Ggra1820.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 757919..760141 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1820.t1.stop1Ggra1820.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 760139..760141 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1820.t1Ggra1820.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 757919..760141 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1820.t1 ID=Ggra1820.t1|Name=Ggra1820.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=741bp
METGTEAETQTVKGLFSDFVTAASILYSSKKLNQLCTVDKELEREEGSLD
AFFDLLNVVGYSLFRKPTNPPFVVVIEGLDGTGKTTLVKSLAKETYDIEG
QQFNAHAVGTPTVSVSSVRDIFDKCGGQVSRAFYMVSNYILQHEMRIKSE
KDPFAIFFVDRWYSSTCAYSIGWRNTSGGPESVDALDTSLFEWPKDLDVP
NIMIVLHVDGMVRRRRIRQRGELLNHNPWDNRLTSDDNLGRRIVRAWERM
SGPQKAYHLSANGSKEKVLKESQKVIRESIFRQFIPVKYFQQRPLGMFRW
ISSCLGHCNGESGLRYEYKAWNYQVCIYNTDNGNVSLQNHQIQMVDDDGI
LSFSTDHFEGWNMPGRNALASVAWVQGDYPKEYHWKADGIICLVTASEFI
LMDTTSTPGIQVCTHACIREQPKQNHSSVENEEMALSLHRERISRTKLGI
NAGKFPTRFVPLRMELRIGDVKSRGTSHSYEWVRDRKLLGNAWSFSGQRI
PPQSSSDFLKQRTLLPVTLAILGTHTSGKKTLGERLAAIFGWSFHPELGD
ILRDRDNIIAAGHKTGDGRAEKESVGMVWDDKIHEAECERDRATTCSRVV
ETWHVGNVAWALLRQKSSAALMQNAEPLIDQAKDAIKSELKKAVVLFVHL
GIDVGTSIRRRQTEENAKRIPMMNERDECTELHEALDVQGAKLLSEFTDF
NIPVLHLENSEDGEQAIDKSIRQIIHFVNRNLWRKVFREG*
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spliced messenger RNA

>Ggra1820.t1 ID=Ggra1820.t1|Name=Ggra1820.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2223bp|location=Sequence derived from alignment at tig00000050_pilon:757919..760141+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAACAGGCACAGAAGCTGAAACTCAGACGGTAAAGGGCTTATTCAG
CGACTTTGTAACCGCCGCCAGTATTCTTTACAGTAGCAAGAAGCTGAACC
AACTATGTACAGTAGATAAAGAACTGGAGAGGGAAGAAGGTAGTCTAGAT
GCTTTCTTCGATCTGCTGAACGTCGTCGGGTACAGTCTGTTTAGAAAGCC
TACCAACCCGCCTTTTGTTGTAGTTATTGAAGGTCTTGATGGTACTGGGA
AGACAACGCTTGTTAAGTCCCTCGCAAAAGAAACATATGACATAGAGGGA
CAACAATTTAATGCACATGCCGTTGGAACACCTACAGTCTCCGTTTCTTC
TGTTAGAGACATCTTTGACAAATGTGGTGGACAGGTATCCAGAGCGTTTT
ATATGGTCAGCAACTACATCTTACAGCATGAAATGCGTATCAAGTCCGAG
AAAGATCCTTTTGCAATCTTTTTTGTTGATCGATGGTATTCCTCAACTTG
TGCCTACTCCATAGGATGGAGAAACACTTCCGGTGGACCGGAGTCTGTTG
ATGCATTAGATACTTCTCTGTTCGAGTGGCCGAAGGATTTAGATGTTCCA
AATATAATGATTGTGCTTCATGTTGACGGAATGGTGCGAAGACGGCGAAT
TCGCCAGCGTGGAGAACTCTTGAACCATAATCCATGGGACAACCGTCTTA
CAAGTGATGATAATCTTGGGAGGCGAATTGTGCGAGCATGGGAGCGAATG
TCAGGACCTCAAAAAGCTTATCATTTATCTGCCAACGGATCTAAGGAGAA
AGTTCTCAAGGAAAGCCAAAAGGTCATCAGAGAAAGCATTTTCCGTCAAT
TTATACCAGTTAAGTACTTTCAGCAGAGGCCACTGGGAATGTTTCGATGG
ATATCTTCATGTCTTGGGCACTGCAACGGCGAGAGTGGACTACGATACGA
GTACAAGGCGTGGAACTACCAAGTCTGCATATACAATACGGACAATGGAA
ATGTTTCGCTGCAGAACCACCAAATTCAAATGGTTGATGACGATGGTATT
CTCTCGTTCTCGACCGACCACTTCGAAGGCTGGAATATGCCTGGCAGAAA
CGCTTTAGCGTCTGTTGCATGGGTCCAAGGAGATTACCCTAAGGAGTACC
ATTGGAAAGCGGACGGAATAATATGCCTGGTTACGGCATCCGAGTTTATC
TTAATGGACACCACTTCAACTCCGGGTATACAGGTTTGCACCCACGCTTG
CATCCGCGAGCAGCCGAAACAGAACCACAGCAGCGTAGAAAACGAGGAAA
TGGCACTCTCGTTGCACCGTGAACGCATCTCGCGAACCAAACTCGGAATC
AATGCCGGTAAGTTTCCCACAAGGTTTGTCCCACTGCGCATGGAGCTTCG
AATAGGAGACGTGAAATCCCGAGGGACGAGCCACTCGTACGAATGGGTTC
GCGACCGCAAGCTGTTGGGGAATGCGTGGTCCTTCTCGGGTCAAAGGATA
CCCCCGCAATCCTCAAGCGATTTCTTGAAGCAACGGACTTTGCTACCTGT
TACGCTTGCCATTCTTGGCACTCACACGTCGGGCAAGAAGACTCTTGGAG
AACGCCTAGCTGCTATTTTTGGCTGGTCGTTTCACCCTGAACTTGGCGAT
ATTCTACGAGACAGGGACAATATAATTGCTGCTGGGCATAAAACTGGCGA
CGGTAGAGCAGAAAAGGAATCTGTAGGTATGGTATGGGATGATAAGATTC
ACGAAGCGGAATGTGAACGGGACAGAGCTACAACATGTAGCCGTGTAGTG
GAGACTTGGCATGTAGGGAACGTAGCCTGGGCTCTGCTTCGACAAAAATC
ATCTGCAGCACTAATGCAAAATGCTGAGCCTCTCATCGACCAGGCTAAGG
ACGCGATCAAGTCCGAACTGAAAAAAGCTGTCGTTCTCTTTGTTCATCTG
GGAATCGATGTGGGAACGTCAATTCGCCGACGTCAGACAGAAGAGAACGC
AAAACGCATACCGATGATGAACGAGCGTGACGAGTGTACAGAGCTCCACG
AGGCTTTGGATGTTCAGGGTGCTAAGCTTCTTTCAGAGTTCACTGATTTC
AACATTCCCGTGCTTCACCTAGAAAACTCTGAAGATGGTGAGCAAGCGAT
AGATAAATCTATACGGCAAATTATTCATTTCGTGAACAGGAACTTGTGGC
GCAAGGTGTTCCGGGAGGGGTAA
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protein sequence of Ggra1820.t1

>Ggra1820.t1 ID=Ggra1820.t1|Name=Ggra1820.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=741bp
METGTEAETQTVKGLFSDFVTAASILYSSKKLNQLCTVDKELEREEGSLD
AFFDLLNVVGYSLFRKPTNPPFVVVIEGLDGTGKTTLVKSLAKETYDIEG
QQFNAHAVGTPTVSVSSVRDIFDKCGGQVSRAFYMVSNYILQHEMRIKSE
KDPFAIFFVDRWYSSTCAYSIGWRNTSGGPESVDALDTSLFEWPKDLDVP
NIMIVLHVDGMVRRRRIRQRGELLNHNPWDNRLTSDDNLGRRIVRAWERM
SGPQKAYHLSANGSKEKVLKESQKVIRESIFRQFIPVKYFQQRPLGMFRW
ISSCLGHCNGESGLRYEYKAWNYQVCIYNTDNGNVSLQNHQIQMVDDDGI
LSFSTDHFEGWNMPGRNALASVAWVQGDYPKEYHWKADGIICLVTASEFI
LMDTTSTPGIQVCTHACIREQPKQNHSSVENEEMALSLHRERISRTKLGI
NAGKFPTRFVPLRMELRIGDVKSRGTSHSYEWVRDRKLLGNAWSFSGQRI
PPQSSSDFLKQRTLLPVTLAILGTHTSGKKTLGERLAAIFGWSFHPELGD
ILRDRDNIIAAGHKTGDGRAEKESVGMVWDDKIHEAECERDRATTCSRVV
ETWHVGNVAWALLRQKSSAALMQNAEPLIDQAKDAIKSELKKAVVLFVHL
GIDVGTSIRRRQTEENAKRIPMMNERDECTELHEALDVQGAKLLSEFTDF
NIPVLHLENSEDGEQAIDKSIRQIIHFVNRNLWRKVFREG*
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mRNA from alignment at tig00000050_pilon:757919..760141+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1820.t1 ID=Ggra1820.t1|Name=Ggra1820.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2223bp|location=Sequence derived from alignment at tig00000050_pilon:757919..760141+ (Gracilaria gracilis GNS1m male)
ATGGAAACAGGCACAGAAGCTGAAACTCAGACGGTAAAGGGCTTATTCAG CGACTTTGTAACCGCCGCCAGTATTCTTTACAGTAGCAAGAAGCTGAACC AACTATGTACAGTAGATAAAGAACTGGAGAGGGAAGAAGGTAGTCTAGAT GCTTTCTTCGATCTGCTGAACGTCGTCGGGTACAGTCTGTTTAGAAAGCC TACCAACCCGCCTTTTGTTGTAGTTATTGAAGGTCTTGATGGTACTGGGA AGACAACGCTTGTTAAGTCCCTCGCAAAAGAAACATATGACATAGAGGGA CAACAATTTAATGCACATGCCGTTGGAACACCTACAGTCTCCGTTTCTTC TGTTAGAGACATCTTTGACAAATGTGGTGGACAGGTATCCAGAGCGTTTT ATATGGTCAGCAACTACATCTTACAGCATGAAATGCGTATCAAGTCCGAG AAAGATCCTTTTGCAATCTTTTTTGTTGATCGATGGTATTCCTCAACTTG TGCCTACTCCATAGGATGGAGAAACACTTCCGGTGGACCGGAGTCTGTTG ATGCATTAGATACTTCTCTGTTCGAGTGGCCGAAGGATTTAGATGTTCCA AATATAATGATTGTGCTTCATGTTGACGGAATGGTGCGAAGACGGCGAAT TCGCCAGCGTGGAGAACTCTTGAACCATAATCCATGGGACAACCGTCTTA CAAGTGATGATAATCTTGGGAGGCGAATTGTGCGAGCATGGGAGCGAATG TCAGGACCTCAAAAAGCTTATCATTTATCTGCCAACGGATCTAAGGAGAA AGTTCTCAAGGAAAGCCAAAAGGTCATCAGAGAAAGCATTTTCCGTCAAT TTATACCAGTTAAGTACTTTCAGCAGAGGCCACTGGGAATGTTTCGATGG ATATCTTCATGTCTTGGGCACTGCAACGGCGAGAGTGGACTACGATACGA GTACAAGGCGTGGAACTACCAAGTCTGCATATACAATACGGACAATGGAA ATGTTTCGCTGCAGAACCACCAAATTCAAATGGTTGATGACGATGGTATT CTCTCGTTCTCGACCGACCACTTCGAAGGCTGGAATATGCCTGGCAGAAA CGCTTTAGCGTCTGTTGCATGGGTCCAAGGAGATTACCCTAAGGAGTACC ATTGGAAAGCGGACGGAATAATATGCCTGGTTACGGCATCCGAGTTTATC TTAATGGACACCACTTCAACTCCGGGTATACAGGTTTGCACCCACGCTTG CATCCGCGAGCAGCCGAAACAGAACCACAGCAGCGTAGAAAACGAGGAAA TGGCACTCTCGTTGCACCGTGAACGCATCTCGCGAACCAAACTCGGAATC AATGCCGGTAAGTTTCCCACAAGGTTTGTCCCACTGCGCATGGAGCTTCG AATAGGAGACGTGAAATCCCGAGGGACGAGCCACTCGTACGAATGGGTTC GCGACCGCAAGCTGTTGGGGAATGCGTGGTCCTTCTCGGGTCAAAGGATA CCCCCGCAATCCTCAAGCGATTTCTTGAAGCAACGGACTTTGCTACCTGT TACGCTTGCCATTCTTGGCACTCACACGTCGGGCAAGAAGACTCTTGGAG AACGCCTAGCTGCTATTTTTGGCTGGTCGTTTCACCCTGAACTTGGCGAT ATTCTACGAGACAGGGACAATATAATTGCTGCTGGGCATAAAACTGGCGA CGGTAGAGCAGAAAAGGAATCTGTAGGTATGGTATGGGATGATAAGATTC ACGAAGCGGAATGTGAACGGGACAGAGCTACAACATGTAGCCGTGTAGTG GAGACTTGGCATGTAGGGAACGTAGCCTGGGCTCTGCTTCGACAAAAATC ATCTGCAGCACTAATGCAAAATGCTGAGCCTCTCATCGACCAGGCTAAGG ACGCGATCAAGTCCGAACTGAAAAAAGCTGTCGTTCTCTTTGTTCATCTG GGAATCGATGTGGGAACGTCAATTCGCCGACGTCAGACAGAAGAGAACGC AAAACGCATACCGATGATGAACGAGCGTGACGAGTGTACAGAGCTCCACG AGGCTTTGGATGTTCAGGGTGCTAAGCTTCTTTCAGAGTTCACTGATTTC AACATTCCCGTGCTTCACCTAGAAAACTCTGAAGATGGTGAGCAAGCGAT AGATAAATCTATACGGCAAATTATTCATTTCGTGAACAGGAACTTGTGGC GCAAGGTGTTCCGGGAGGGGTAA
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Coding sequence (CDS) from alignment at tig00000050_pilon:757919..760141+

>Ggra1820.t1 ID=Ggra1820.t1|Name=Ggra1820.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2223bp|location=Sequence derived from alignment at tig00000050_pilon:757919..760141+ (Gracilaria gracilis GNS1m male)
ATGGAAACAGGCACAGAAGCTGAAACTCAGACGGTAAAGGGCTTATTCAG
CGACTTTGTAACCGCCGCCAGTATTCTTTACAGTAGCAAGAAGCTGAACC
AACTATGTACAGTAGATAAAGAACTGGAGAGGGAAGAAGGTAGTCTAGAT
GCTTTCTTCGATCTGCTGAACGTCGTCGGGTACAGTCTGTTTAGAAAGCC
TACCAACCCGCCTTTTGTTGTAGTTATTGAAGGTCTTGATGGTACTGGGA
AGACAACGCTTGTTAAGTCCCTCGCAAAAGAAACATATGACATAGAGGGA
CAACAATTTAATGCACATGCCGTTGGAACACCTACAGTCTCCGTTTCTTC
TGTTAGAGACATCTTTGACAAATGTGGTGGACAGGTATCCAGAGCGTTTT
ATATGGTCAGCAACTACATCTTACAGCATGAAATGCGTATCAAGTCCGAG
AAAGATCCTTTTGCAATCTTTTTTGTTGATCGATGGTATTCCTCAACTTG
TGCCTACTCCATAGGATGGAGAAACACTTCCGGTGGACCGGAGTCTGTTG
ATGCATTAGATACTTCTCTGTTCGAGTGGCCGAAGGATTTAGATGTTCCA
AATATAATGATTGTGCTTCATGTTGACGGAATGGTGCGAAGACGGCGAAT
TCGCCAGCGTGGAGAACTCTTGAACCATAATCCATGGGACAACCGTCTTA
CAAGTGATGATAATCTTGGGAGGCGAATTGTGCGAGCATGGGAGCGAATG
TCAGGACCTCAAAAAGCTTATCATTTATCTGCCAACGGATCTAAGGAGAA
AGTTCTCAAGGAAAGCCAAAAGGTCATCAGAGAAAGCATTTTCCGTCAAT
TTATACCAGTTAAGTACTTTCAGCAGAGGCCACTGGGAATGTTTCGATGG
ATATCTTCATGTCTTGGGCACTGCAACGGCGAGAGTGGACTACGATACGA
GTACAAGGCGTGGAACTACCAAGTCTGCATATACAATACGGACAATGGAA
ATGTTTCGCTGCAGAACCACCAAATTCAAATGGTTGATGACGATGGTATT
CTCTCGTTCTCGACCGACCACTTCGAAGGCTGGAATATGCCTGGCAGAAA
CGCTTTAGCGTCTGTTGCATGGGTCCAAGGAGATTACCCTAAGGAGTACC
ATTGGAAAGCGGACGGAATAATATGCCTGGTTACGGCATCCGAGTTTATC
TTAATGGACACCACTTCAACTCCGGGTATACAGGTTTGCACCCACGCTTG
CATCCGCGAGCAGCCGAAACAGAACCACAGCAGCGTAGAAAACGAGGAAA
TGGCACTCTCGTTGCACCGTGAACGCATCTCGCGAACCAAACTCGGAATC
AATGCCGGTAAGTTTCCCACAAGGTTTGTCCCACTGCGCATGGAGCTTCG
AATAGGAGACGTGAAATCCCGAGGGACGAGCCACTCGTACGAATGGGTTC
GCGACCGCAAGCTGTTGGGGAATGCGTGGTCCTTCTCGGGTCAAAGGATA
CCCCCGCAATCCTCAAGCGATTTCTTGAAGCAACGGACTTTGCTACCTGT
TACGCTTGCCATTCTTGGCACTCACACGTCGGGCAAGAAGACTCTTGGAG
AACGCCTAGCTGCTATTTTTGGCTGGTCGTTTCACCCTGAACTTGGCGAT
ATTCTACGAGACAGGGACAATATAATTGCTGCTGGGCATAAAACTGGCGA
CGGTAGAGCAGAAAAGGAATCTGTAGGTATGGTATGGGATGATAAGATTC
ACGAAGCGGAATGTGAACGGGACAGAGCTACAACATGTAGCCGTGTAGTG
GAGACTTGGCATGTAGGGAACGTAGCCTGGGCTCTGCTTCGACAAAAATC
ATCTGCAGCACTAATGCAAAATGCTGAGCCTCTCATCGACCAGGCTAAGG
ACGCGATCAAGTCCGAACTGAAAAAAGCTGTCGTTCTCTTTGTTCATCTG
GGAATCGATGTGGGAACGTCAATTCGCCGACGTCAGACAGAAGAGAACGC
AAAACGCATACCGATGATGAACGAGCGTGACGAGTGTACAGAGCTCCACG
AGGCTTTGGATGTTCAGGGTGCTAAGCTTCTTTCAGAGTTCACTGATTTC
AACATTCCCGTGCTTCACCTAGAAAACTCTGAAGATGGTGAGCAAGCGAT
AGATAAATCTATACGGCAAATTATTCATTTCGTGAACAGGAACTTGTGGC
GCAAGGTGTTCCGGGAGGGGTAA
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