Ggra1816.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1816.t1
Unique NameGgra1816.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length454
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:715982..717343 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog946483.Cenrod_0667
Preferred namearp3
PFAMsAnk_2,Ank_3,Ank_4,Ank_5
Max annot lvl28216|Betaproteobacteria
KEGG koko:K06867
Evalue1.29e-06
EggNOG OGsCOG0666@1|root,COG0666@2|Bacteria,1N952@1224|Proteobacteria,2VPIV@28216|Betaproteobacteria,4ADCG@80864|Comamonadaceae
DescriptionPFAM Ankyrin
COG categoryS
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1816Ggra1816Gracilaria gracilis GNS1m malegenetig00000050_pilon 715982..717343 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1816.t1.stop1Ggra1816.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 715982..715984 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1816.t1.CDS1Ggra1816.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 715982..717343 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1816.t1.exon1Ggra1816.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 715982..717343 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1816.t1.start1Ggra1816.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 717341..717343 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1816.t1Ggra1816.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 715982..717343 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1816.t1 ID=Ggra1816.t1|Name=Ggra1816.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=454bp
MTNNGGKELVQAARDGYPGTVRRYLNRDVDPNYQDEQGFTALHRAVEGSC
LSVIMTLLLSKRIDVNKRNRKKQTALILAARNGDYYAAKALLNKKAKVNY
EDKWRCNALDYAERLGHEEIGKDLKAAGARPTGKKRKVPITVFRSPGPKD
TAETMLLRCLEDPKVNITERQVRNVICGSKITDLRQFLSANYLLHLLRKI
KHPVMEWFCNFNASGDYVLEHVYYKVSEIDLDKVAQFLVGSSATLAEARG
LIRRGKAVDVRKFIKIDARIRRQRKQLLSLTNEVLQEILKLDNRLLKVEG
MSREAFTKLQQLADNEKQTIKEVTRMRDYLNELHSALQKKEKRDKYIGIA
RVLISTIPVFGNALGNAVYTSAEIFFGLTTQHLVEISTDLLKGGISIGLG
SDLSDSTSVKALADESLLSKLEPKSRNRIEFAVRQSKFRGMENLSKQLQS
IDN*
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spliced messenger RNA

>Ggra1816.t1 ID=Ggra1816.t1|Name=Ggra1816.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1362bp|location=Sequence derived from alignment at tig00000050_pilon:715982..717343- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGAACAATGGAGGGAAAGAACTTGTACAAGCAGCGCGGGATGGATA
TCCAGGTACTGTGAGACGGTATCTAAATAGAGACGTTGATCCCAATTATC
AGGATGAACAAGGTTTCACAGCCCTGCACAGAGCTGTTGAAGGTAGTTGC
TTGTCTGTTATAATGACCTTGCTTCTCTCCAAGCGTATCGATGTCAACAA
AAGGAACCGAAAAAAACAGACTGCGCTAATTTTAGCCGCACGCAACGGCG
ATTACTATGCTGCCAAGGCCCTTTTGAACAAGAAGGCGAAGGTTAATTAT
GAAGACAAATGGAGATGTAACGCTTTGGATTATGCGGAGCGATTAGGCCA
TGAGGAGATTGGTAAAGATCTAAAAGCGGCTGGCGCTCGCCCTACCGGGA
AAAAACGAAAAGTACCCATAACGGTATTTCGCTCACCGGGTCCAAAAGAT
ACGGCGGAGACCATGCTTCTACGCTGTCTTGAAGATCCAAAGGTTAATAT
CACAGAAAGGCAGGTTCGCAATGTGATATGTGGATCCAAAATCACCGACC
TCCGTCAGTTTCTATCCGCCAACTATCTTCTCCATCTGCTGAGAAAGATT
AAGCACCCTGTAATGGAATGGTTTTGCAACTTCAATGCATCAGGTGATTA
TGTGCTCGAACATGTTTACTATAAGGTTTCTGAAATAGACCTTGACAAAG
TAGCACAGTTCCTGGTTGGGTCCTCGGCTACATTGGCCGAAGCTCGTGGA
CTTATTCGACGTGGGAAAGCAGTTGACGTCAGAAAGTTCATAAAGATTGA
TGCCAGAATACGCAGGCAGCGAAAACAACTTCTCTCTTTGACAAATGAAG
TGCTGCAAGAGATTCTTAAACTTGACAACCGCTTACTTAAAGTGGAGGGC
ATGTCAAGAGAAGCATTCACAAAGCTTCAACAACTGGCTGACAACGAAAA
ACAAACCATAAAGGAAGTGACAAGAATGCGGGATTACCTCAATGAACTAC
ATTCGGCTCTGCAGAAGAAGGAGAAACGCGACAAATATATTGGAATCGCC
CGGGTACTGATTTCCACAATCCCAGTGTTTGGGAACGCTTTGGGCAATGC
TGTATACACATCGGCTGAGATTTTCTTTGGATTGACTACACAGCATCTGG
TCGAGATCTCAACTGACCTGCTCAAGGGTGGAATATCGATTGGGCTTGGT
TCGGATCTGAGTGACAGCACTAGCGTTAAGGCATTGGCTGACGAATCACT
TCTATCGAAGTTGGAACCAAAATCCCGAAACAGAATAGAGTTTGCTGTAC
GGCAAAGCAAGTTTAGAGGCATGGAAAATCTATCCAAGCAGCTTCAGTCA
ATTGATAATTAG
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protein sequence of Ggra1816.t1

>Ggra1816.t1 ID=Ggra1816.t1|Name=Ggra1816.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=454bp
MTNNGGKELVQAARDGYPGTVRRYLNRDVDPNYQDEQGFTALHRAVEGSC
LSVIMTLLLSKRIDVNKRNRKKQTALILAARNGDYYAAKALLNKKAKVNY
EDKWRCNALDYAERLGHEEIGKDLKAAGARPTGKKRKVPITVFRSPGPKD
TAETMLLRCLEDPKVNITERQVRNVICGSKITDLRQFLSANYLLHLLRKI
KHPVMEWFCNFNASGDYVLEHVYYKVSEIDLDKVAQFLVGSSATLAEARG
LIRRGKAVDVRKFIKIDARIRRQRKQLLSLTNEVLQEILKLDNRLLKVEG
MSREAFTKLQQLADNEKQTIKEVTRMRDYLNELHSALQKKEKRDKYIGIA
RVLISTIPVFGNALGNAVYTSAEIFFGLTTQHLVEISTDLLKGGISIGLG
SDLSDSTSVKALADESLLSKLEPKSRNRIEFAVRQSKFRGMENLSKQLQS
IDN*
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mRNA from alignment at tig00000050_pilon:715982..717343-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1816.t1 ID=Ggra1816.t1|Name=Ggra1816.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1362bp|location=Sequence derived from alignment at tig00000050_pilon:715982..717343- (Gracilaria gracilis GNS1m male)
ATGACGAACAATGGAGGGAAAGAACTTGTACAAGCAGCGCGGGATGGATA
TCCAGGTACTGTGAGACGGTATCTAAATAGAGACGTTGATCCCAATTATC
AGGATGAACAAGGTTTCACAGCCCTGCACAGAGCTGTTGAAGGTAGTTGC
TTGTCTGTTATAATGACCTTGCTTCTCTCCAAGCGTATCGATGTCAACAA
AAGGAACCGAAAAAAACAGACTGCGCTAATTTTAGCCGCACGCAACGGCG
ATTACTATGCTGCCAAGGCCCTTTTGAACAAGAAGGCGAAGGTTAATTAT
GAAGACAAATGGAGATGTAACGCTTTGGATTATGCGGAGCGATTAGGCCA
TGAGGAGATTGGTAAAGATCTAAAAGCGGCTGGCGCTCGCCCTACCGGGA
AAAAACGAAAAGTACCCATAACGGTATTTCGCTCACCGGGTCCAAAAGAT
ACGGCGGAGACCATGCTTCTACGCTGTCTTGAAGATCCAAAGGTTAATAT
CACAGAAAGGCAGGTTCGCAATGTGATATGTGGATCCAAAATCACCGACC
TCCGTCAGTTTCTATCCGCCAACTATCTTCTCCATCTGCTGAGAAAGATT
AAGCACCCTGTAATGGAATGGTTTTGCAACTTCAATGCATCAGGTGATTA
TGTGCTCGAACATGTTTACTATAAGGTTTCTGAAATAGACCTTGACAAAG
TAGCACAGTTCCTGGTTGGGTCCTCGGCTACATTGGCCGAAGCTCGTGGA
CTTATTCGACGTGGGAAAGCAGTTGACGTCAGAAAGTTCATAAAGATTGA
TGCCAGAATACGCAGGCAGCGAAAACAACTTCTCTCTTTGACAAATGAAG
TGCTGCAAGAGATTCTTAAACTTGACAACCGCTTACTTAAAGTGGAGGGC
ATGTCAAGAGAAGCATTCACAAAGCTTCAACAACTGGCTGACAACGAAAA
ACAAACCATAAAGGAAGTGACAAGAATGCGGGATTACCTCAATGAACTAC
ATTCGGCTCTGCAGAAGAAGGAGAAACGCGACAAATATATTGGAATCGCC
CGGGTACTGATTTCCACAATCCCAGTGTTTGGGAACGCTTTGGGCAATGC
TGTATACACATCGGCTGAGATTTTCTTTGGATTGACTACACAGCATCTGG
TCGAGATCTCAACTGACCTGCTCAAGGGTGGAATATCGATTGGGCTTGGT
TCGGATCTGAGTGACAGCACTAGCGTTAAGGCATTGGCTGACGAATCACT
TCTATCGAAGTTGGAACCAAAATCCCGAAACAGAATAGAGTTTGCTGTAC
GGCAAAGCAAGTTTAGAGGCATGGAAAATCTATCCAAGCAGCTTCAGTCA
ATTGATAATTAG
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Coding sequence (CDS) from alignment at tig00000050_pilon:715982..717343-

>Ggra1816.t1 ID=Ggra1816.t1|Name=Ggra1816.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1362bp|location=Sequence derived from alignment at tig00000050_pilon:715982..717343- (Gracilaria gracilis GNS1m male)
ATGACGAACAATGGAGGGAAAGAACTTGTACAAGCAGCGCGGGATGGATA
TCCAGGTACTGTGAGACGGTATCTAAATAGAGACGTTGATCCCAATTATC
AGGATGAACAAGGTTTCACAGCCCTGCACAGAGCTGTTGAAGGTAGTTGC
TTGTCTGTTATAATGACCTTGCTTCTCTCCAAGCGTATCGATGTCAACAA
AAGGAACCGAAAAAAACAGACTGCGCTAATTTTAGCCGCACGCAACGGCG
ATTACTATGCTGCCAAGGCCCTTTTGAACAAGAAGGCGAAGGTTAATTAT
GAAGACAAATGGAGATGTAACGCTTTGGATTATGCGGAGCGATTAGGCCA
TGAGGAGATTGGTAAAGATCTAAAAGCGGCTGGCGCTCGCCCTACCGGGA
AAAAACGAAAAGTACCCATAACGGTATTTCGCTCACCGGGTCCAAAAGAT
ACGGCGGAGACCATGCTTCTACGCTGTCTTGAAGATCCAAAGGTTAATAT
CACAGAAAGGCAGGTTCGCAATGTGATATGTGGATCCAAAATCACCGACC
TCCGTCAGTTTCTATCCGCCAACTATCTTCTCCATCTGCTGAGAAAGATT
AAGCACCCTGTAATGGAATGGTTTTGCAACTTCAATGCATCAGGTGATTA
TGTGCTCGAACATGTTTACTATAAGGTTTCTGAAATAGACCTTGACAAAG
TAGCACAGTTCCTGGTTGGGTCCTCGGCTACATTGGCCGAAGCTCGTGGA
CTTATTCGACGTGGGAAAGCAGTTGACGTCAGAAAGTTCATAAAGATTGA
TGCCAGAATACGCAGGCAGCGAAAACAACTTCTCTCTTTGACAAATGAAG
TGCTGCAAGAGATTCTTAAACTTGACAACCGCTTACTTAAAGTGGAGGGC
ATGTCAAGAGAAGCATTCACAAAGCTTCAACAACTGGCTGACAACGAAAA
ACAAACCATAAAGGAAGTGACAAGAATGCGGGATTACCTCAATGAACTAC
ATTCGGCTCTGCAGAAGAAGGAGAAACGCGACAAATATATTGGAATCGCC
CGGGTACTGATTTCCACAATCCCAGTGTTTGGGAACGCTTTGGGCAATGC
TGTATACACATCGGCTGAGATTTTCTTTGGATTGACTACACAGCATCTGG
TCGAGATCTCAACTGACCTGCTCAAGGGTGGAATATCGATTGGGCTTGGT
TCGGATCTGAGTGACAGCACTAGCGTTAAGGCATTGGCTGACGAATCACT
TCTATCGAAGTTGGAACCAAAATCCCGAAACAGAATAGAGTTTGCTGTAC
GGCAAAGCAAGTTTAGAGGCATGGAAAATCTATCCAAGCAGCTTCAGTCA
ATTGATAATTAG
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