Ggra1815.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1815.t1
Unique NameGgra1815.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length467
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:711743..713143 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706051.1
Preferred nameCS
PFAMsCitrate_synt
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00067
KEGG koko:K01647
KEGG ReactionR00351
KEGG Pathwayko00020,ko00630,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,map00020,map00630,map01100,map01110,map01120,map01130,map01200,map01210,map01230
KEGG ModuleM00009,M00010,M00012,M00740
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004108,GO:0005488,GO:0005524,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005777,GO:0005975,GO:0006081,GO:0006082,GO:0006084,GO:0006091,GO:0006097,GO:0006099,GO:0006101,GO:0006107,GO:0006139,GO:0006163,GO:0006195,GO:0006520,GO:0006536,GO:0006537,GO:0006629,GO:0006631,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008270,GO:0008652,GO:0009056,GO:0009058,GO:0009060,GO:0009062,GO:0009064,GO:0009084,GO:0009109,GO:0009117,GO:0009150,GO:0009154,GO:0009166,GO:0009259,GO:0009261,GO:0009403,GO:0009404,GO:0009507,GO:0009536,GO:0009987,GO:0010035,GO:0010038,GO:0014823,GO:0015980,GO:0016042,GO:0016053,GO:0016054,GO:0016740,GO:0016746,GO:0016999,GO:0017001,GO:0017076,GO:0017144,GO:0018130,GO:0019438,GO:0019439,GO:0019541,GO:0019543,GO:0019626,GO:0019629,GO:0019637,GO:0019679,GO:0019693,GO:0019748,GO:0019752,GO:0030312,GO:0030554,GO:0031974,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0033865,GO:0033869,GO:0033875,GO:0034031,GO:0034032,GO:0034034,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0035383,GO:0035639,GO:0036094,GO:0036440,GO:0042221,GO:0042579,GO:0042737,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043385,GO:0043386,GO:0043436,GO:0043603,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044262,GO:0044270,GO:0044271,GO:0044273,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0045333,GO:0045460,GO:0045461,GO:0046356,GO:0046394,GO:0046395,GO:0046434,GO:0046459,GO:0046483,GO:0046487,GO:0046686,GO:0046700,GO:0046872,GO:0046912,GO:0046914,GO:0050440,GO:0050896,GO:0051186,GO:0051187,GO:0055086,GO:0055114,GO:0070013,GO:0071704,GO:0071944,GO:0072329,GO:0072350,GO:0072521,GO:0072523,GO:0097159,GO:0097367,GO:1901135,GO:1901136,GO:1901265,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901376,GO:1901378,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901607
Evalue1.74e-213
EggNOG OGsCOG0372@1|root,KOG2617@2759|Eukaryota
EC2.3.3.1
Descriptioncitrate (Si)-synthase activity
COG categoryC
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1815Ggra1815Gracilaria gracilis GNS1m malegenetig00000050_pilon 711743..713143 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1815.t1.stop1Ggra1815.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 711743..711745 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1815.t1.CDS1Ggra1815.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 711743..713143 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1815.t1.exon1Ggra1815.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 711743..713143 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1815.t1.start1Ggra1815.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 713141..713143 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1815.t1Ggra1815.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 711743..713143 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1815.t1 ID=Ggra1815.t1|Name=Ggra1815.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=467bp
MALYRLRSIVPHVRSQIRHATVIAPANSSGLKEAIAAKIPSAIADVKEVR
SKYGDMQLGTCTVAQAYGGMRSVKAMTYETSHLDTEDGIRFRGYTLPECQ
QLLPKAKGGSEPLPEALFWLLITGDMPTDKQIDALRSDLASRSKLPQSVL
DAIDAMPLDMHPMTQFSIAILAMQQQSVMAHEYAMGTPKSMFWEHCLEDS
LVILAQLPEVAARIYRRSFKGGSYIPSDAENLDLSANFARMMGFDHPEFD
DVMRLYLTIHADHEGGNVSAHTIRLVGSALSDPYLALSAGMNGLAGPLHG
LANQEVLRWIVNIQQKLGGKEPTKENLAELCWETLNSGQVIPGYGHAVLR
KTDPRYTCQREFALKHLGEDEMFKMVSLLYEVVPKVLAEHGKVKNPWPNV
DAHSGVLLRYYGLTEELYYTVLFGVSRAIGPLASLVWDRALGLPIERPKS
VTTAWIKNHFEKKVAA*
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spliced messenger RNA

>Ggra1815.t1 ID=Ggra1815.t1|Name=Ggra1815.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1401bp|location=Sequence derived from alignment at tig00000050_pilon:711743..713143- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCTGTATCGACTTCGATCCATTGTTCCTCACGTGCGCTCGCAGAT
TCGTCATGCGACCGTCATCGCTCCCGCAAACTCCTCAGGTCTGAAGGAGG
CCATCGCCGCCAAGATCCCTTCCGCGATCGCAGATGTCAAGGAAGTGCGT
TCAAAATATGGCGACATGCAATTAGGAACTTGCACTGTTGCACAAGCCTA
TGGCGGAATGCGTAGTGTCAAGGCAATGACGTATGAAACATCTCATCTCG
ATACTGAAGATGGAATTCGTTTTCGTGGTTACACACTTCCGGAGTGTCAA
CAATTGCTACCCAAGGCGAAGGGCGGCAGCGAGCCACTACCGGAAGCGTT
GTTCTGGCTCTTGATCACCGGTGATATGCCAACAGACAAGCAGATCGATG
CCCTTCGGAGTGATTTGGCCTCCAGATCAAAGCTTCCACAATCCGTTCTT
GATGCTATTGATGCGATGCCCCTTGATATGCACCCCATGACCCAGTTTTC
AATTGCTATTCTTGCTATGCAGCAGCAGAGTGTTATGGCTCACGAGTACG
CCATGGGCACACCAAAGAGCATGTTTTGGGAGCATTGCTTAGAAGATTCG
CTTGTTATCCTTGCGCAGCTCCCAGAGGTTGCTGCCCGAATCTACCGGAG
ATCATTCAAGGGCGGTTCATATATTCCGAGCGATGCCGAGAACTTGGATC
TCAGTGCCAATTTTGCGCGCATGATGGGCTTTGATCACCCCGAATTCGAT
GACGTCATGAGATTGTATCTCACTATTCACGCCGATCATGAGGGAGGGAA
CGTATCTGCTCACACCATTCGCTTGGTGGGATCGGCTCTGAGTGATCCTT
ATTTGGCACTTTCCGCGGGAATGAATGGTCTCGCTGGTCCTTTGCATGGA
CTTGCAAATCAAGAAGTGCTACGCTGGATCGTGAATATCCAACAGAAATT
GGGGGGTAAGGAACCTACAAAAGAGAATCTCGCAGAGCTTTGTTGGGAGA
CACTCAACTCTGGACAGGTCATTCCTGGATATGGCCATGCTGTGCTTCGC
AAGACAGACCCGCGATACACATGTCAGCGAGAATTTGCCTTGAAGCATTT
AGGGGAAGATGAGATGTTTAAGATGGTTTCTCTTCTGTATGAAGTTGTTC
CCAAGGTGTTGGCGGAGCATGGTAAGGTGAAGAACCCGTGGCCTAATGTT
GACGCACATTCTGGAGTTCTCCTCAGGTACTACGGACTAACCGAGGAACT
GTATTACACAGTTTTGTTCGGCGTCTCACGAGCCATTGGTCCGTTGGCAA
GCCTTGTGTGGGATCGGGCTCTTGGTCTGCCCATCGAACGCCCCAAGTCC
GTCACCACTGCTTGGATCAAGAATCATTTTGAGAAAAAAGTGGCAGCATA
A
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protein sequence of Ggra1815.t1

>Ggra1815.t1 ID=Ggra1815.t1|Name=Ggra1815.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=467bp
MALYRLRSIVPHVRSQIRHATVIAPANSSGLKEAIAAKIPSAIADVKEVR
SKYGDMQLGTCTVAQAYGGMRSVKAMTYETSHLDTEDGIRFRGYTLPECQ
QLLPKAKGGSEPLPEALFWLLITGDMPTDKQIDALRSDLASRSKLPQSVL
DAIDAMPLDMHPMTQFSIAILAMQQQSVMAHEYAMGTPKSMFWEHCLEDS
LVILAQLPEVAARIYRRSFKGGSYIPSDAENLDLSANFARMMGFDHPEFD
DVMRLYLTIHADHEGGNVSAHTIRLVGSALSDPYLALSAGMNGLAGPLHG
LANQEVLRWIVNIQQKLGGKEPTKENLAELCWETLNSGQVIPGYGHAVLR
KTDPRYTCQREFALKHLGEDEMFKMVSLLYEVVPKVLAEHGKVKNPWPNV
DAHSGVLLRYYGLTEELYYTVLFGVSRAIGPLASLVWDRALGLPIERPKS
VTTAWIKNHFEKKVAA*
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mRNA from alignment at tig00000050_pilon:711743..713143-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1815.t1 ID=Ggra1815.t1|Name=Ggra1815.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1401bp|location=Sequence derived from alignment at tig00000050_pilon:711743..713143- (Gracilaria gracilis GNS1m male)
ATGGCGCTGTATCGACTTCGATCCATTGTTCCTCACGTGCGCTCGCAGAT
TCGTCATGCGACCGTCATCGCTCCCGCAAACTCCTCAGGTCTGAAGGAGG
CCATCGCCGCCAAGATCCCTTCCGCGATCGCAGATGTCAAGGAAGTGCGT
TCAAAATATGGCGACATGCAATTAGGAACTTGCACTGTTGCACAAGCCTA
TGGCGGAATGCGTAGTGTCAAGGCAATGACGTATGAAACATCTCATCTCG
ATACTGAAGATGGAATTCGTTTTCGTGGTTACACACTTCCGGAGTGTCAA
CAATTGCTACCCAAGGCGAAGGGCGGCAGCGAGCCACTACCGGAAGCGTT
GTTCTGGCTCTTGATCACCGGTGATATGCCAACAGACAAGCAGATCGATG
CCCTTCGGAGTGATTTGGCCTCCAGATCAAAGCTTCCACAATCCGTTCTT
GATGCTATTGATGCGATGCCCCTTGATATGCACCCCATGACCCAGTTTTC
AATTGCTATTCTTGCTATGCAGCAGCAGAGTGTTATGGCTCACGAGTACG
CCATGGGCACACCAAAGAGCATGTTTTGGGAGCATTGCTTAGAAGATTCG
CTTGTTATCCTTGCGCAGCTCCCAGAGGTTGCTGCCCGAATCTACCGGAG
ATCATTCAAGGGCGGTTCATATATTCCGAGCGATGCCGAGAACTTGGATC
TCAGTGCCAATTTTGCGCGCATGATGGGCTTTGATCACCCCGAATTCGAT
GACGTCATGAGATTGTATCTCACTATTCACGCCGATCATGAGGGAGGGAA
CGTATCTGCTCACACCATTCGCTTGGTGGGATCGGCTCTGAGTGATCCTT
ATTTGGCACTTTCCGCGGGAATGAATGGTCTCGCTGGTCCTTTGCATGGA
CTTGCAAATCAAGAAGTGCTACGCTGGATCGTGAATATCCAACAGAAATT
GGGGGGTAAGGAACCTACAAAAGAGAATCTCGCAGAGCTTTGTTGGGAGA
CACTCAACTCTGGACAGGTCATTCCTGGATATGGCCATGCTGTGCTTCGC
AAGACAGACCCGCGATACACATGTCAGCGAGAATTTGCCTTGAAGCATTT
AGGGGAAGATGAGATGTTTAAGATGGTTTCTCTTCTGTATGAAGTTGTTC
CCAAGGTGTTGGCGGAGCATGGTAAGGTGAAGAACCCGTGGCCTAATGTT
GACGCACATTCTGGAGTTCTCCTCAGGTACTACGGACTAACCGAGGAACT
GTATTACACAGTTTTGTTCGGCGTCTCACGAGCCATTGGTCCGTTGGCAA
GCCTTGTGTGGGATCGGGCTCTTGGTCTGCCCATCGAACGCCCCAAGTCC
GTCACCACTGCTTGGATCAAGAATCATTTTGAGAAAAAAGTGGCAGCATA
A
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Coding sequence (CDS) from alignment at tig00000050_pilon:711743..713143-

>Ggra1815.t1 ID=Ggra1815.t1|Name=Ggra1815.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1401bp|location=Sequence derived from alignment at tig00000050_pilon:711743..713143- (Gracilaria gracilis GNS1m male)
ATGGCGCTGTATCGACTTCGATCCATTGTTCCTCACGTGCGCTCGCAGAT
TCGTCATGCGACCGTCATCGCTCCCGCAAACTCCTCAGGTCTGAAGGAGG
CCATCGCCGCCAAGATCCCTTCCGCGATCGCAGATGTCAAGGAAGTGCGT
TCAAAATATGGCGACATGCAATTAGGAACTTGCACTGTTGCACAAGCCTA
TGGCGGAATGCGTAGTGTCAAGGCAATGACGTATGAAACATCTCATCTCG
ATACTGAAGATGGAATTCGTTTTCGTGGTTACACACTTCCGGAGTGTCAA
CAATTGCTACCCAAGGCGAAGGGCGGCAGCGAGCCACTACCGGAAGCGTT
GTTCTGGCTCTTGATCACCGGTGATATGCCAACAGACAAGCAGATCGATG
CCCTTCGGAGTGATTTGGCCTCCAGATCAAAGCTTCCACAATCCGTTCTT
GATGCTATTGATGCGATGCCCCTTGATATGCACCCCATGACCCAGTTTTC
AATTGCTATTCTTGCTATGCAGCAGCAGAGTGTTATGGCTCACGAGTACG
CCATGGGCACACCAAAGAGCATGTTTTGGGAGCATTGCTTAGAAGATTCG
CTTGTTATCCTTGCGCAGCTCCCAGAGGTTGCTGCCCGAATCTACCGGAG
ATCATTCAAGGGCGGTTCATATATTCCGAGCGATGCCGAGAACTTGGATC
TCAGTGCCAATTTTGCGCGCATGATGGGCTTTGATCACCCCGAATTCGAT
GACGTCATGAGATTGTATCTCACTATTCACGCCGATCATGAGGGAGGGAA
CGTATCTGCTCACACCATTCGCTTGGTGGGATCGGCTCTGAGTGATCCTT
ATTTGGCACTTTCCGCGGGAATGAATGGTCTCGCTGGTCCTTTGCATGGA
CTTGCAAATCAAGAAGTGCTACGCTGGATCGTGAATATCCAACAGAAATT
GGGGGGTAAGGAACCTACAAAAGAGAATCTCGCAGAGCTTTGTTGGGAGA
CACTCAACTCTGGACAGGTCATTCCTGGATATGGCCATGCTGTGCTTCGC
AAGACAGACCCGCGATACACATGTCAGCGAGAATTTGCCTTGAAGCATTT
AGGGGAAGATGAGATGTTTAAGATGGTTTCTCTTCTGTATGAAGTTGTTC
CCAAGGTGTTGGCGGAGCATGGTAAGGTGAAGAACCCGTGGCCTAATGTT
GACGCACATTCTGGAGTTCTCCTCAGGTACTACGGACTAACCGAGGAACT
GTATTACACAGTTTTGTTCGGCGTCTCACGAGCCATTGGTCCGTTGGCAA
GCCTTGTGTGGGATCGGGCTCTTGGTCTGCCCATCGAACGCCCCAAGTCC
GTCACCACTGCTTGGATCAAGAATCATTTTGAGAAAAAAGTGGCAGCATA
A
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