Ggra1814.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1814.t1
Unique Name	Ggra1814.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	378

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000050_pilon	contig	tig00000050_pilon:710503..711636 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	218851.Aquca_014_00720.1
PFAMs	Sacchrp_dh_NADP
Max annot lvl	35493\|Streptophyta
Evalue	2.88e-83
EggNOG OGs	COG1748@1\|root,2QQSS@2759\|Eukaryota,37KRX@33090\|Viridiplantae,3GBGB@35493\|Streptophyta
Description	Saccharopine dehydrogenase NADP binding domain
COG category	E

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1814	Ggra1814	Gracilaria gracilis GNS1m male	gene	tig00000050_pilon 710503..711636 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1814.t1.start1	Ggra1814.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000050_pilon 710503..710505 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1814.t1.CDS1	Ggra1814.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000050_pilon 710503..711636 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1814.t1.exon1	Ggra1814.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000050_pilon 710503..711636 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1814.t1.stop1	Ggra1814.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000050_pilon 711634..711636 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1814.t1	Ggra1814.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000050_pilon 710503..711636 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000050_pilon:710503..711636+
coding sequence from alignment at tig00000050_pilon:710503..711636+

mRNA sequence

>Ggra1814.t1 ID=Ggra1814.t1|Name=Ggra1814.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=378bp
MCSPSNVLVLGGSGRVGTETITALARISSQPLNIILGGRNATRGNAICDK
LGSTFPTHQFSFVKADITDSQSLLPQLRNSDLVIHAAGPFQRKESPDAVL
QAAMHANVKYMDVCDDLEHAQECKKLHEEALERGYTALISTGIYPGLSNL
MAAEACSSMKDVNALKLYYHTAGTGGIGATILASTFLLLSEQALCFSNGK
PVLRPPAGDTEVYDFGGNVGPKTTYLLNLPEVRSLHDILAPNATIWAKFC
TGPPVWNWLLQATAKWVPNSVLRNRAAMLKFSQFSLPIVRFVDMLSGART
AMVVHVEMTGQRIEYCFEHERLATCVGEATAAFAYEMLTSNAIEPGVHFP
EQLNARTRENIIKNASLTANFCEMKTI*

spliced messenger RNA

>Ggra1814.t1 ID=Ggra1814.t1|Name=Ggra1814.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1134bp|location=Sequence derived from alignment at tig00000050_pilon:710503..711636+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCTCGCCCTCGAACGTGTTGGTTCTCGGAGGTTCGGGACGGGTTGG
AACTGAAACTATAACGGCCCTCGCCCGTATCTCCTCACAACCGTTGAATA
TAATCCTCGGCGGACGAAACGCGACTCGCGGAAATGCAATATGTGACAAA
CTCGGATCAACGTTTCCCACACATCAGTTTTCTTTCGTCAAGGCGGATAT
AACAGACTCTCAATCATTGCTTCCTCAGCTTAGGAATTCTGATCTTGTGA
TACACGCCGCTGGTCCCTTTCAACGGAAAGAATCTCCGGATGCTGTACTG
CAAGCGGCAATGCATGCGAACGTCAAGTACATGGATGTCTGCGACGATCT
TGAGCATGCTCAGGAATGCAAGAAGCTCCATGAAGAGGCTCTCGAACGTG
GATATACCGCGTTGATATCAACGGGAATATATCCCGGTCTCAGCAACTTA
ATGGCTGCAGAGGCATGCTCGTCTATGAAGGATGTCAATGCGCTTAAGCT
ATACTATCACACCGCAGGAACTGGCGGAATCGGCGCTACAATTTTGGCCA
GTACGTTTCTTCTGTTGAGTGAACAGGCACTGTGTTTTTCCAACGGCAAG
CCCGTTCTACGCCCTCCTGCTGGTGATACTGAGGTCTACGATTTTGGGGG
TAACGTCGGTCCTAAGACCACGTACCTGCTGAATCTTCCGGAAGTAAGGT
CCCTGCATGACATACTCGCACCCAATGCTACCATCTGGGCAAAGTTCTGC
ACAGGTCCCCCAGTATGGAACTGGTTACTACAGGCAACAGCCAAATGGGT
CCCAAACAGTGTTCTTAGAAACCGAGCTGCGATGCTTAAGTTTTCGCAGT
TCAGTCTTCCAATTGTTCGTTTTGTGGATATGCTCAGTGGTGCTCGAACT
GCGATGGTCGTTCATGTGGAGATGACAGGTCAGCGAATAGAGTACTGTTT
CGAACATGAACGTTTGGCTACGTGTGTCGGAGAGGCGACTGCTGCATTCG
CATATGAAATGCTAACGTCGAACGCAATAGAGCCAGGTGTGCACTTTCCA
GAACAGCTTAATGCACGCACTCGGGAGAACATAATCAAGAACGCAAGCTT
GACGGCAAACTTCTGTGAAATGAAAACAATATAG

protein sequence of Ggra1814.t1

>Ggra1814.t1 ID=Ggra1814.t1|Name=Ggra1814.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=378bp
MCSPSNVLVLGGSGRVGTETITALARISSQPLNIILGGRNATRGNAICDK
LGSTFPTHQFSFVKADITDSQSLLPQLRNSDLVIHAAGPFQRKESPDAVL
QAAMHANVKYMDVCDDLEHAQECKKLHEEALERGYTALISTGIYPGLSNL
MAAEACSSMKDVNALKLYYHTAGTGGIGATILASTFLLLSEQALCFSNGK
PVLRPPAGDTEVYDFGGNVGPKTTYLLNLPEVRSLHDILAPNATIWAKFC
TGPPVWNWLLQATAKWVPNSVLRNRAAMLKFSQFSLPIVRFVDMLSGART
AMVVHVEMTGQRIEYCFEHERLATCVGEATAAFAYEMLTSNAIEPGVHFP
EQLNARTRENIIKNASLTANFCEMKTI*

mRNA from alignment at tig00000050_pilon:710503..711636+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1814.t1 ID=Ggra1814.t1|Name=Ggra1814.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1134bp|location=Sequence derived from alignment at tig00000050_pilon:710503..711636+ (Gracilaria gracilis GNS1m male)
ATGTGCTCGCCCTCGAACGTGTTGGTTCTCGGAGGTTCGGGACGGGTTGG
AACTGAAACTATAACGGCCCTCGCCCGTATCTCCTCACAACCGTTGAATA
TAATCCTCGGCGGACGAAACGCGACTCGCGGAAATGCAATATGTGACAAA
CTCGGATCAACGTTTCCCACACATCAGTTTTCTTTCGTCAAGGCGGATAT
AACAGACTCTCAATCATTGCTTCCTCAGCTTAGGAATTCTGATCTTGTGA
TACACGCCGCTGGTCCCTTTCAACGGAAAGAATCTCCGGATGCTGTACTG
CAAGCGGCAATGCATGCGAACGTCAAGTACATGGATGTCTGCGACGATCT
TGAGCATGCTCAGGAATGCAAGAAGCTCCATGAAGAGGCTCTCGAACGTG
GATATACCGCGTTGATATCAACGGGAATATATCCCGGTCTCAGCAACTTA
ATGGCTGCAGAGGCATGCTCGTCTATGAAGGATGTCAATGCGCTTAAGCT
ATACTATCACACCGCAGGAACTGGCGGAATCGGCGCTACAATTTTGGCCA
GTACGTTTCTTCTGTTGAGTGAACAGGCACTGTGTTTTTCCAACGGCAAG
CCCGTTCTACGCCCTCCTGCTGGTGATACTGAGGTCTACGATTTTGGGGG
TAACGTCGGTCCTAAGACCACGTACCTGCTGAATCTTCCGGAAGTAAGGT
CCCTGCATGACATACTCGCACCCAATGCTACCATCTGGGCAAAGTTCTGC
ACAGGTCCCCCAGTATGGAACTGGTTACTACAGGCAACAGCCAAATGGGT
CCCAAACAGTGTTCTTAGAAACCGAGCTGCGATGCTTAAGTTTTCGCAGT
TCAGTCTTCCAATTGTTCGTTTTGTGGATATGCTCAGTGGTGCTCGAACT
GCGATGGTCGTTCATGTGGAGATGACAGGTCAGCGAATAGAGTACTGTTT
CGAACATGAACGTTTGGCTACGTGTGTCGGAGAGGCGACTGCTGCATTCG
CATATGAAATGCTAACGTCGAACGCAATAGAGCCAGGTGTGCACTTTCCA
GAACAGCTTAATGCACGCACTCGGGAGAACATAATCAAGAACGCAAGCTT
GACGGCAAACTTCTGTGAAATGAAAACAATATAG

Coding sequence (CDS) from alignment at tig00000050_pilon:710503..711636+

>Ggra1814.t1 ID=Ggra1814.t1|Name=Ggra1814.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1134bp|location=Sequence derived from alignment at tig00000050_pilon:710503..711636+ (Gracilaria gracilis GNS1m male)
ATGTGCTCGCCCTCGAACGTGTTGGTTCTCGGAGGTTCGGGACGGGTTGG
AACTGAAACTATAACGGCCCTCGCCCGTATCTCCTCACAACCGTTGAATA
TAATCCTCGGCGGACGAAACGCGACTCGCGGAAATGCAATATGTGACAAA
CTCGGATCAACGTTTCCCACACATCAGTTTTCTTTCGTCAAGGCGGATAT
AACAGACTCTCAATCATTGCTTCCTCAGCTTAGGAATTCTGATCTTGTGA
TACACGCCGCTGGTCCCTTTCAACGGAAAGAATCTCCGGATGCTGTACTG
CAAGCGGCAATGCATGCGAACGTCAAGTACATGGATGTCTGCGACGATCT
TGAGCATGCTCAGGAATGCAAGAAGCTCCATGAAGAGGCTCTCGAACGTG
GATATACCGCGTTGATATCAACGGGAATATATCCCGGTCTCAGCAACTTA
ATGGCTGCAGAGGCATGCTCGTCTATGAAGGATGTCAATGCGCTTAAGCT
ATACTATCACACCGCAGGAACTGGCGGAATCGGCGCTACAATTTTGGCCA
GTACGTTTCTTCTGTTGAGTGAACAGGCACTGTGTTTTTCCAACGGCAAG
CCCGTTCTACGCCCTCCTGCTGGTGATACTGAGGTCTACGATTTTGGGGG
TAACGTCGGTCCTAAGACCACGTACCTGCTGAATCTTCCGGAAGTAAGGT
CCCTGCATGACATACTCGCACCCAATGCTACCATCTGGGCAAAGTTCTGC
ACAGGTCCCCCAGTATGGAACTGGTTACTACAGGCAACAGCCAAATGGGT
CCCAAACAGTGTTCTTAGAAACCGAGCTGCGATGCTTAAGTTTTCGCAGT
TCAGTCTTCCAATTGTTCGTTTTGTGGATATGCTCAGTGGTGCTCGAACT
GCGATGGTCGTTCATGTGGAGATGACAGGTCAGCGAATAGAGTACTGTTT
CGAACATGAACGTTTGGCTACGTGTGTCGGAGAGGCGACTGCTGCATTCG
CATATGAAATGCTAACGTCGAACGCAATAGAGCCAGGTGTGCACTTTCCA
GAACAGCTTAATGCACGCACTCGGGAGAACATAATCAAGAACGCAAGCTT
GACGGCAAACTTCTGTGAAATGAAAACAATATAG