Ggra1810.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1810.t1
Unique NameGgra1810.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length719
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:697402..699558 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704425.1
Preferred nameDET1
PFAMsDet1
Max annot lvl2759|Eukaryota
KEGG koko:K10571
KEGG Pathwayko04120,map04120
GOsGO:0000003,GO:0000122,GO:0000151,GO:0003006,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005700,GO:0006139,GO:0006259,GO:0006281,GO:0006355,GO:0006357,GO:0006464,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007276,GO:0007281,GO:0007292,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010629,GO:0016043,GO:0016567,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0030154,GO:0030162,GO:0030674,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031329,GO:0031331,GO:0031461,GO:0031464,GO:0031625,GO:0032268,GO:0032270,GO:0032434,GO:0032436,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033554,GO:0034641,GO:0036211,GO:0042176,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044389,GO:0044424,GO:0044464,GO:0044703,GO:0044877,GO:0045732,GO:0045862,GO:0045892,GO:0045934,GO:0046483,GO:0048468,GO:0048477,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051704,GO:0051716,GO:0060090,GO:0060255,GO:0061136,GO:0065003,GO:0065007,GO:0070647,GO:0071704,GO:0071840,GO:0080008,GO:0080090,GO:0090304,GO:1901360,GO:1901564,GO:1901800,GO:1902494,GO:1902679,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1903506,GO:1903507,GO:1990234,GO:1990756,GO:2000058,GO:2000060,GO:2000112,GO:2000113,GO:2001141
Evalue3.59e-39
EggNOG OGsKOG2558@1|root,KOG2558@2759|Eukaryota
Descriptionprotein binding, bridging involved in substrate recognition for ubiquitination
COG categoryS
BRITEko00000,ko00001,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1810Ggra1810Gracilaria gracilis GNS1m malegenetig00000050_pilon 697402..699558 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1810.t1.stop1Ggra1810.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 697402..697404 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1810.t1.CDS1Ggra1810.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 697402..699558 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1810.t1.exon1Ggra1810.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 697402..699558 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1810.t1.start1Ggra1810.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 699556..699558 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1810.t1Ggra1810.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 697402..699558 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1810.t1 ID=Ggra1810.t1|Name=Ggra1810.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=719bp
MDTFVDTAAAVAPKILPPLLAAAWLPCVGGPKGSRRASPLNGHGRLVWGA
ASMTRRRRPRRRGVLQALRRRESGHLSCHAFRRAAYSALVPASTFIHVQS
VPNLCFRRFTACGQYLIALDANNRLIVFRFETGGRKIDSVSVARPSPRHL
YDTAAFPPPSSRLQSPLFSQLDAHFQMPSQSSHASLLLSLPVPLVASTAQ
QTQSPPHPRQLPSYTCHFAQFFTYMYAMSIVSGTAHIARDFSMSTSSGKY
LVLASYQTHNQPQNTTLPAISSLPSMTIIFYLVEVRTGVIADRFVLLDDF
VKFPSHEGIHFHADMLCILSMRHQLLHIVKIQEALGKFTEERCIGAMCDR
DDQQVIARAREAQNAHVTQQQQNRQAVSNRPSVPNLLQSEKQDVNGPGAA
DVEEAQDEAEQDESKETGLGNGMLKDAFYGGLMQRLLAYVYRRMRSEGNA
PLFYRVIGQYSLLVMRRAQFLDDDHLLIRLGSFNGSEHGLQQHSMLARET
CFFVVYCMSTTRIVNLFENRSTQLLRTFHMYREAFVGDEMEAASLPPLRH
SVLDEEEGRDGDNNEGADPRRNGTNERAGRSWSNSATRRGTSDRVRRTRL
ELSRIPMSRQVRMVSPYLDRSLFSYNPERSNVLTARRFAPAKDLGSVKFM
SVETGELRFKLATEFSLLDGETDGERGFSEMEDGGVRQRMFLFHPLLPFV
MAMEGHRPVNFHVYGHTE*
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spliced messenger RNA

>Ggra1810.t1 ID=Ggra1810.t1|Name=Ggra1810.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2157bp|location=Sequence derived from alignment at tig00000050_pilon:697402..699558- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATACCTTCGTAGATACAGCGGCTGCAGTTGCGCCAAAAATCCTGCC
ACCGCTGCTGGCTGCTGCCTGGCTGCCCTGCGTTGGCGGCCCCAAAGGGA
GCCGCCGCGCCTCGCCCCTCAACGGCCATGGGCGCCTTGTTTGGGGCGCA
GCTTCCATGACACGACGCCGTCGCCCCCGTCGTCGTGGCGTGCTCCAAGC
GCTCCGTCGTCGTGAAAGTGGCCACTTGTCGTGTCACGCCTTTCGCCGCG
CCGCCTACTCCGCCCTCGTCCCGGCCTCCACCTTCATCCATGTGCAGTCC
GTTCCCAACTTGTGCTTCCGCCGCTTCACCGCGTGCGGACAGTATCTCAT
AGCGCTCGATGCCAACAACCGTCTCATCGTGTTTCGTTTTGAGACCGGCG
GCCGCAAGATCGATTCCGTCTCTGTTGCCCGCCCCTCGCCGCGTCACCTC
TACGACACTGCTGCCTTTCCGCCCCCTTCGTCGCGCCTTCAGTCTCCCCT
CTTTTCGCAGCTCGATGCCCACTTTCAGATGCCCTCGCAGTCTAGTCATG
CCTCCTTGTTGTTATCTCTACCCGTTCCGCTCGTCGCTTCCACCGCGCAA
CAGACGCAATCGCCTCCTCACCCGCGGCAACTCCCGTCCTATACATGTCA
CTTTGCCCAGTTTTTCACCTACATGTATGCCATGTCTATCGTGTCTGGCA
CCGCGCACATTGCACGAGACTTTTCGATGAGCACGTCCAGTGGCAAGTAT
CTCGTACTTGCCTCCTACCAAACTCACAATCAACCTCAAAACACTACGCT
ACCGGCCATTTCATCGCTTCCCTCCATGACCATCATCTTCTATCTGGTTG
AGGTTCGCACCGGTGTCATAGCCGACCGCTTTGTTCTCTTGGATGATTTC
GTAAAATTCCCTTCGCACGAAGGCATCCATTTCCACGCCGATATGCTTTG
CATTTTGTCTATGAGGCACCAACTGTTGCATATAGTCAAGATACAGGAGG
CGTTGGGAAAGTTTACCGAAGAGCGATGCATTGGTGCCATGTGCGACAGA
GATGATCAGCAAGTCATTGCGCGCGCGCGAGAGGCACAAAATGCCCACGT
TACTCAACAACAACAGAACAGGCAAGCTGTGTCCAATCGACCATCAGTCC
CAAACCTGTTGCAGAGCGAAAAGCAAGATGTCAACGGGCCGGGCGCTGCA
GATGTGGAAGAGGCACAGGATGAAGCTGAACAGGACGAGTCCAAAGAGAC
TGGCTTGGGAAACGGAATGCTCAAGGATGCGTTTTACGGCGGACTTATGC
AGAGGTTGTTAGCATATGTTTATAGACGCATGCGTTCGGAGGGTAATGCA
CCATTGTTTTATCGTGTCATCGGACAGTATAGCCTTTTGGTGATGCGAAG
AGCACAATTTTTGGATGACGACCATTTGCTGATTCGTTTGGGATCTTTCA
ATGGGAGTGAGCATGGTCTTCAGCAGCATAGTATGTTGGCAAGGGAGACC
TGTTTCTTCGTCGTGTATTGCATGTCCACCACACGCATTGTCAACCTGTT
TGAGAACAGGTCCACCCAGCTTTTGCGAACGTTTCACATGTATAGGGAGG
CTTTTGTGGGTGACGAAATGGAAGCCGCTTCTTTGCCACCTCTACGGCAC
AGCGTGCTAGATGAAGAGGAAGGCAGAGATGGTGATAATAATGAAGGCGC
TGATCCTCGTAGGAATGGCACCAACGAACGAGCAGGCCGGTCGTGGTCCA
ACTCCGCGACTAGACGAGGCACTTCTGACAGAGTGCGAAGGACCAGACTG
GAATTATCGCGCATTCCTATGTCCAGGCAGGTGCGAATGGTATCGCCTTA
CTTGGACCGCTCGCTGTTCTCGTATAATCCAGAGAGAAGCAATGTCCTCA
CGGCTCGGCGATTTGCACCTGCCAAGGATTTGGGTAGCGTCAAGTTCATG
AGCGTGGAAACTGGCGAACTGAGATTCAAATTGGCGACGGAGTTTAGTTT
GCTCGATGGTGAGACGGATGGCGAGAGGGGTTTCTCGGAAATGGAGGACG
GGGGTGTGCGACAAAGAATGTTTCTTTTTCACCCGCTTTTACCGTTTGTC
ATGGCGATGGAGGGGCATCGTCCGGTGAACTTTCATGTTTATGGACACAC
TGAATGA
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protein sequence of Ggra1810.t1

>Ggra1810.t1 ID=Ggra1810.t1|Name=Ggra1810.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=719bp
MDTFVDTAAAVAPKILPPLLAAAWLPCVGGPKGSRRASPLNGHGRLVWGA
ASMTRRRRPRRRGVLQALRRRESGHLSCHAFRRAAYSALVPASTFIHVQS
VPNLCFRRFTACGQYLIALDANNRLIVFRFETGGRKIDSVSVARPSPRHL
YDTAAFPPPSSRLQSPLFSQLDAHFQMPSQSSHASLLLSLPVPLVASTAQ
QTQSPPHPRQLPSYTCHFAQFFTYMYAMSIVSGTAHIARDFSMSTSSGKY
LVLASYQTHNQPQNTTLPAISSLPSMTIIFYLVEVRTGVIADRFVLLDDF
VKFPSHEGIHFHADMLCILSMRHQLLHIVKIQEALGKFTEERCIGAMCDR
DDQQVIARAREAQNAHVTQQQQNRQAVSNRPSVPNLLQSEKQDVNGPGAA
DVEEAQDEAEQDESKETGLGNGMLKDAFYGGLMQRLLAYVYRRMRSEGNA
PLFYRVIGQYSLLVMRRAQFLDDDHLLIRLGSFNGSEHGLQQHSMLARET
CFFVVYCMSTTRIVNLFENRSTQLLRTFHMYREAFVGDEMEAASLPPLRH
SVLDEEEGRDGDNNEGADPRRNGTNERAGRSWSNSATRRGTSDRVRRTRL
ELSRIPMSRQVRMVSPYLDRSLFSYNPERSNVLTARRFAPAKDLGSVKFM
SVETGELRFKLATEFSLLDGETDGERGFSEMEDGGVRQRMFLFHPLLPFV
MAMEGHRPVNFHVYGHTE*
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mRNA from alignment at tig00000050_pilon:697402..699558-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1810.t1 ID=Ggra1810.t1|Name=Ggra1810.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2157bp|location=Sequence derived from alignment at tig00000050_pilon:697402..699558- (Gracilaria gracilis GNS1m male)
ATGGATACCTTCGTAGATACAGCGGCTGCAGTTGCGCCAAAAATCCTGCC ACCGCTGCTGGCTGCTGCCTGGCTGCCCTGCGTTGGCGGCCCCAAAGGGA GCCGCCGCGCCTCGCCCCTCAACGGCCATGGGCGCCTTGTTTGGGGCGCA GCTTCCATGACACGACGCCGTCGCCCCCGTCGTCGTGGCGTGCTCCAAGC GCTCCGTCGTCGTGAAAGTGGCCACTTGTCGTGTCACGCCTTTCGCCGCG CCGCCTACTCCGCCCTCGTCCCGGCCTCCACCTTCATCCATGTGCAGTCC GTTCCCAACTTGTGCTTCCGCCGCTTCACCGCGTGCGGACAGTATCTCAT AGCGCTCGATGCCAACAACCGTCTCATCGTGTTTCGTTTTGAGACCGGCG GCCGCAAGATCGATTCCGTCTCTGTTGCCCGCCCCTCGCCGCGTCACCTC TACGACACTGCTGCCTTTCCGCCCCCTTCGTCGCGCCTTCAGTCTCCCCT CTTTTCGCAGCTCGATGCCCACTTTCAGATGCCCTCGCAGTCTAGTCATG CCTCCTTGTTGTTATCTCTACCCGTTCCGCTCGTCGCTTCCACCGCGCAA CAGACGCAATCGCCTCCTCACCCGCGGCAACTCCCGTCCTATACATGTCA CTTTGCCCAGTTTTTCACCTACATGTATGCCATGTCTATCGTGTCTGGCA CCGCGCACATTGCACGAGACTTTTCGATGAGCACGTCCAGTGGCAAGTAT CTCGTACTTGCCTCCTACCAAACTCACAATCAACCTCAAAACACTACGCT ACCGGCCATTTCATCGCTTCCCTCCATGACCATCATCTTCTATCTGGTTG AGGTTCGCACCGGTGTCATAGCCGACCGCTTTGTTCTCTTGGATGATTTC GTAAAATTCCCTTCGCACGAAGGCATCCATTTCCACGCCGATATGCTTTG CATTTTGTCTATGAGGCACCAACTGTTGCATATAGTCAAGATACAGGAGG CGTTGGGAAAGTTTACCGAAGAGCGATGCATTGGTGCCATGTGCGACAGA GATGATCAGCAAGTCATTGCGCGCGCGCGAGAGGCACAAAATGCCCACGT TACTCAACAACAACAGAACAGGCAAGCTGTGTCCAATCGACCATCAGTCC CAAACCTGTTGCAGAGCGAAAAGCAAGATGTCAACGGGCCGGGCGCTGCA GATGTGGAAGAGGCACAGGATGAAGCTGAACAGGACGAGTCCAAAGAGAC TGGCTTGGGAAACGGAATGCTCAAGGATGCGTTTTACGGCGGACTTATGC AGAGGTTGTTAGCATATGTTTATAGACGCATGCGTTCGGAGGGTAATGCA CCATTGTTTTATCGTGTCATCGGACAGTATAGCCTTTTGGTGATGCGAAG AGCACAATTTTTGGATGACGACCATTTGCTGATTCGTTTGGGATCTTTCA ATGGGAGTGAGCATGGTCTTCAGCAGCATAGTATGTTGGCAAGGGAGACC TGTTTCTTCGTCGTGTATTGCATGTCCACCACACGCATTGTCAACCTGTT TGAGAACAGGTCCACCCAGCTTTTGCGAACGTTTCACATGTATAGGGAGG CTTTTGTGGGTGACGAAATGGAAGCCGCTTCTTTGCCACCTCTACGGCAC AGCGTGCTAGATGAAGAGGAAGGCAGAGATGGTGATAATAATGAAGGCGC TGATCCTCGTAGGAATGGCACCAACGAACGAGCAGGCCGGTCGTGGTCCA ACTCCGCGACTAGACGAGGCACTTCTGACAGAGTGCGAAGGACCAGACTG GAATTATCGCGCATTCCTATGTCCAGGCAGGTGCGAATGGTATCGCCTTA CTTGGACCGCTCGCTGTTCTCGTATAATCCAGAGAGAAGCAATGTCCTCA CGGCTCGGCGATTTGCACCTGCCAAGGATTTGGGTAGCGTCAAGTTCATG AGCGTGGAAACTGGCGAACTGAGATTCAAATTGGCGACGGAGTTTAGTTT GCTCGATGGTGAGACGGATGGCGAGAGGGGTTTCTCGGAAATGGAGGACG GGGGTGTGCGACAAAGAATGTTTCTTTTTCACCCGCTTTTACCGTTTGTC ATGGCGATGGAGGGGCATCGTCCGGTGAACTTTCATGTTTATGGACACAC TGAATGA
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Coding sequence (CDS) from alignment at tig00000050_pilon:697402..699558-

>Ggra1810.t1 ID=Ggra1810.t1|Name=Ggra1810.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2157bp|location=Sequence derived from alignment at tig00000050_pilon:697402..699558- (Gracilaria gracilis GNS1m male)
ATGGATACCTTCGTAGATACAGCGGCTGCAGTTGCGCCAAAAATCCTGCC
ACCGCTGCTGGCTGCTGCCTGGCTGCCCTGCGTTGGCGGCCCCAAAGGGA
GCCGCCGCGCCTCGCCCCTCAACGGCCATGGGCGCCTTGTTTGGGGCGCA
GCTTCCATGACACGACGCCGTCGCCCCCGTCGTCGTGGCGTGCTCCAAGC
GCTCCGTCGTCGTGAAAGTGGCCACTTGTCGTGTCACGCCTTTCGCCGCG
CCGCCTACTCCGCCCTCGTCCCGGCCTCCACCTTCATCCATGTGCAGTCC
GTTCCCAACTTGTGCTTCCGCCGCTTCACCGCGTGCGGACAGTATCTCAT
AGCGCTCGATGCCAACAACCGTCTCATCGTGTTTCGTTTTGAGACCGGCG
GCCGCAAGATCGATTCCGTCTCTGTTGCCCGCCCCTCGCCGCGTCACCTC
TACGACACTGCTGCCTTTCCGCCCCCTTCGTCGCGCCTTCAGTCTCCCCT
CTTTTCGCAGCTCGATGCCCACTTTCAGATGCCCTCGCAGTCTAGTCATG
CCTCCTTGTTGTTATCTCTACCCGTTCCGCTCGTCGCTTCCACCGCGCAA
CAGACGCAATCGCCTCCTCACCCGCGGCAACTCCCGTCCTATACATGTCA
CTTTGCCCAGTTTTTCACCTACATGTATGCCATGTCTATCGTGTCTGGCA
CCGCGCACATTGCACGAGACTTTTCGATGAGCACGTCCAGTGGCAAGTAT
CTCGTACTTGCCTCCTACCAAACTCACAATCAACCTCAAAACACTACGCT
ACCGGCCATTTCATCGCTTCCCTCCATGACCATCATCTTCTATCTGGTTG
AGGTTCGCACCGGTGTCATAGCCGACCGCTTTGTTCTCTTGGATGATTTC
GTAAAATTCCCTTCGCACGAAGGCATCCATTTCCACGCCGATATGCTTTG
CATTTTGTCTATGAGGCACCAACTGTTGCATATAGTCAAGATACAGGAGG
CGTTGGGAAAGTTTACCGAAGAGCGATGCATTGGTGCCATGTGCGACAGA
GATGATCAGCAAGTCATTGCGCGCGCGCGAGAGGCACAAAATGCCCACGT
TACTCAACAACAACAGAACAGGCAAGCTGTGTCCAATCGACCATCAGTCC
CAAACCTGTTGCAGAGCGAAAAGCAAGATGTCAACGGGCCGGGCGCTGCA
GATGTGGAAGAGGCACAGGATGAAGCTGAACAGGACGAGTCCAAAGAGAC
TGGCTTGGGAAACGGAATGCTCAAGGATGCGTTTTACGGCGGACTTATGC
AGAGGTTGTTAGCATATGTTTATAGACGCATGCGTTCGGAGGGTAATGCA
CCATTGTTTTATCGTGTCATCGGACAGTATAGCCTTTTGGTGATGCGAAG
AGCACAATTTTTGGATGACGACCATTTGCTGATTCGTTTGGGATCTTTCA
ATGGGAGTGAGCATGGTCTTCAGCAGCATAGTATGTTGGCAAGGGAGACC
TGTTTCTTCGTCGTGTATTGCATGTCCACCACACGCATTGTCAACCTGTT
TGAGAACAGGTCCACCCAGCTTTTGCGAACGTTTCACATGTATAGGGAGG
CTTTTGTGGGTGACGAAATGGAAGCCGCTTCTTTGCCACCTCTACGGCAC
AGCGTGCTAGATGAAGAGGAAGGCAGAGATGGTGATAATAATGAAGGCGC
TGATCCTCGTAGGAATGGCACCAACGAACGAGCAGGCCGGTCGTGGTCCA
ACTCCGCGACTAGACGAGGCACTTCTGACAGAGTGCGAAGGACCAGACTG
GAATTATCGCGCATTCCTATGTCCAGGCAGGTGCGAATGGTATCGCCTTA
CTTGGACCGCTCGCTGTTCTCGTATAATCCAGAGAGAAGCAATGTCCTCA
CGGCTCGGCGATTTGCACCTGCCAAGGATTTGGGTAGCGTCAAGTTCATG
AGCGTGGAAACTGGCGAACTGAGATTCAAATTGGCGACGGAGTTTAGTTT
GCTCGATGGTGAGACGGATGGCGAGAGGGGTTTCTCGGAAATGGAGGACG
GGGGTGTGCGACAAAGAATGTTTCTTTTTCACCCGCTTTTACCGTTTGTC
ATGGCGATGGAGGGGCATCGTCCGGTGAACTTTCATGTTTATGGACACAC
TGAATGA
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