|
|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 130081.XP_005704425.1 |
| Preferred name | DET1 |
| PFAMs | Det1 |
| Max annot lvl | 2759|Eukaryota |
| KEGG ko | ko:K10571 |
| KEGG Pathway | ko04120,map04120 |
| GOs | GO:0000003,GO:0000122,GO:0000151,GO:0003006,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005700,GO:0006139,GO:0006259,GO:0006281,GO:0006355,GO:0006357,GO:0006464,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007276,GO:0007281,GO:0007292,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010629,GO:0016043,GO:0016567,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0030154,GO:0030162,GO:0030674,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031329,GO:0031331,GO:0031461,GO:0031464,GO:0031625,GO:0032268,GO:0032270,GO:0032434,GO:0032436,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033554,GO:0034641,GO:0036211,GO:0042176,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044389,GO:0044424,GO:0044464,GO:0044703,GO:0044877,GO:0045732,GO:0045862,GO:0045892,GO:0045934,GO:0046483,GO:0048468,GO:0048477,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051704,GO:0051716,GO:0060090,GO:0060255,GO:0061136,GO:0065003,GO:0065007,GO:0070647,GO:0071704,GO:0071840,GO:0080008,GO:0080090,GO:0090304,GO:1901360,GO:1901564,GO:1901800,GO:1902494,GO:1902679,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1903506,GO:1903507,GO:1990234,GO:1990756,GO:2000058,GO:2000060,GO:2000112,GO:2000113,GO:2001141 |
| Evalue | 3.59e-39 |
| EggNOG OGs | KOG2558@1|root,KOG2558@2759|Eukaryota |
| Description | protein binding, bridging involved in substrate recognition for ubiquitination |
| COG category | S |
| BRITE | ko00000,ko00001,ko04121 |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra1810.t1.stop1 | Ggra1810.t1.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000050_pilon 697402..697404 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra1810.t1.start1 | Ggra1810.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000050_pilon 699556..699558 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra1810.t1 ID=Ggra1810.t1|Name=Ggra1810.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=719bp MDTFVDTAAAVAPKILPPLLAAAWLPCVGGPKGSRRASPLNGHGRLVWGA ASMTRRRRPRRRGVLQALRRRESGHLSCHAFRRAAYSALVPASTFIHVQS VPNLCFRRFTACGQYLIALDANNRLIVFRFETGGRKIDSVSVARPSPRHL YDTAAFPPPSSRLQSPLFSQLDAHFQMPSQSSHASLLLSLPVPLVASTAQ QTQSPPHPRQLPSYTCHFAQFFTYMYAMSIVSGTAHIARDFSMSTSSGKY LVLASYQTHNQPQNTTLPAISSLPSMTIIFYLVEVRTGVIADRFVLLDDF VKFPSHEGIHFHADMLCILSMRHQLLHIVKIQEALGKFTEERCIGAMCDR DDQQVIARAREAQNAHVTQQQQNRQAVSNRPSVPNLLQSEKQDVNGPGAA DVEEAQDEAEQDESKETGLGNGMLKDAFYGGLMQRLLAYVYRRMRSEGNA PLFYRVIGQYSLLVMRRAQFLDDDHLLIRLGSFNGSEHGLQQHSMLARET CFFVVYCMSTTRIVNLFENRSTQLLRTFHMYREAFVGDEMEAASLPPLRH SVLDEEEGRDGDNNEGADPRRNGTNERAGRSWSNSATRRGTSDRVRRTRL ELSRIPMSRQVRMVSPYLDRSLFSYNPERSNVLTARRFAPAKDLGSVKFM SVETGELRFKLATEFSLLDGETDGERGFSEMEDGGVRQRMFLFHPLLPFV MAMEGHRPVNFHVYGHTE* back to topspliced messenger RNA >Ggra1810.t1 ID=Ggra1810.t1|Name=Ggra1810.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2157bp|location=Sequence derived from alignment at tig00000050_pilon:697402..699558- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGGATACCTTCGTAGATACAGCGGCTGCAGTTGCGCCAAAAATCCTGCC ACCGCTGCTGGCTGCTGCCTGGCTGCCCTGCGTTGGCGGCCCCAAAGGGA GCCGCCGCGCCTCGCCCCTCAACGGCCATGGGCGCCTTGTTTGGGGCGCA GCTTCCATGACACGACGCCGTCGCCCCCGTCGTCGTGGCGTGCTCCAAGC GCTCCGTCGTCGTGAAAGTGGCCACTTGTCGTGTCACGCCTTTCGCCGCG CCGCCTACTCCGCCCTCGTCCCGGCCTCCACCTTCATCCATGTGCAGTCC GTTCCCAACTTGTGCTTCCGCCGCTTCACCGCGTGCGGACAGTATCTCAT AGCGCTCGATGCCAACAACCGTCTCATCGTGTTTCGTTTTGAGACCGGCG GCCGCAAGATCGATTCCGTCTCTGTTGCCCGCCCCTCGCCGCGTCACCTC TACGACACTGCTGCCTTTCCGCCCCCTTCGTCGCGCCTTCAGTCTCCCCT CTTTTCGCAGCTCGATGCCCACTTTCAGATGCCCTCGCAGTCTAGTCATG CCTCCTTGTTGTTATCTCTACCCGTTCCGCTCGTCGCTTCCACCGCGCAA CAGACGCAATCGCCTCCTCACCCGCGGCAACTCCCGTCCTATACATGTCA CTTTGCCCAGTTTTTCACCTACATGTATGCCATGTCTATCGTGTCTGGCA CCGCGCACATTGCACGAGACTTTTCGATGAGCACGTCCAGTGGCAAGTAT CTCGTACTTGCCTCCTACCAAACTCACAATCAACCTCAAAACACTACGCT ACCGGCCATTTCATCGCTTCCCTCCATGACCATCATCTTCTATCTGGTTG AGGTTCGCACCGGTGTCATAGCCGACCGCTTTGTTCTCTTGGATGATTTC GTAAAATTCCCTTCGCACGAAGGCATCCATTTCCACGCCGATATGCTTTG CATTTTGTCTATGAGGCACCAACTGTTGCATATAGTCAAGATACAGGAGG CGTTGGGAAAGTTTACCGAAGAGCGATGCATTGGTGCCATGTGCGACAGA GATGATCAGCAAGTCATTGCGCGCGCGCGAGAGGCACAAAATGCCCACGT TACTCAACAACAACAGAACAGGCAAGCTGTGTCCAATCGACCATCAGTCC CAAACCTGTTGCAGAGCGAAAAGCAAGATGTCAACGGGCCGGGCGCTGCA GATGTGGAAGAGGCACAGGATGAAGCTGAACAGGACGAGTCCAAAGAGAC TGGCTTGGGAAACGGAATGCTCAAGGATGCGTTTTACGGCGGACTTATGC AGAGGTTGTTAGCATATGTTTATAGACGCATGCGTTCGGAGGGTAATGCA CCATTGTTTTATCGTGTCATCGGACAGTATAGCCTTTTGGTGATGCGAAG AGCACAATTTTTGGATGACGACCATTTGCTGATTCGTTTGGGATCTTTCA ATGGGAGTGAGCATGGTCTTCAGCAGCATAGTATGTTGGCAAGGGAGACC TGTTTCTTCGTCGTGTATTGCATGTCCACCACACGCATTGTCAACCTGTT TGAGAACAGGTCCACCCAGCTTTTGCGAACGTTTCACATGTATAGGGAGG CTTTTGTGGGTGACGAAATGGAAGCCGCTTCTTTGCCACCTCTACGGCAC AGCGTGCTAGATGAAGAGGAAGGCAGAGATGGTGATAATAATGAAGGCGC TGATCCTCGTAGGAATGGCACCAACGAACGAGCAGGCCGGTCGTGGTCCA ACTCCGCGACTAGACGAGGCACTTCTGACAGAGTGCGAAGGACCAGACTG GAATTATCGCGCATTCCTATGTCCAGGCAGGTGCGAATGGTATCGCCTTA CTTGGACCGCTCGCTGTTCTCGTATAATCCAGAGAGAAGCAATGTCCTCA CGGCTCGGCGATTTGCACCTGCCAAGGATTTGGGTAGCGTCAAGTTCATG AGCGTGGAAACTGGCGAACTGAGATTCAAATTGGCGACGGAGTTTAGTTT GCTCGATGGTGAGACGGATGGCGAGAGGGGTTTCTCGGAAATGGAGGACG GGGGTGTGCGACAAAGAATGTTTCTTTTTCACCCGCTTTTACCGTTTGTC ATGGCGATGGAGGGGCATCGTCCGGTGAACTTTCATGTTTATGGACACAC TGAATGA back to topprotein sequence of Ggra1810.t1 >Ggra1810.t1 ID=Ggra1810.t1|Name=Ggra1810.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=719bp
MDTFVDTAAAVAPKILPPLLAAAWLPCVGGPKGSRRASPLNGHGRLVWGA ASMTRRRRPRRRGVLQALRRRESGHLSCHAFRRAAYSALVPASTFIHVQS VPNLCFRRFTACGQYLIALDANNRLIVFRFETGGRKIDSVSVARPSPRHL YDTAAFPPPSSRLQSPLFSQLDAHFQMPSQSSHASLLLSLPVPLVASTAQ QTQSPPHPRQLPSYTCHFAQFFTYMYAMSIVSGTAHIARDFSMSTSSGKY LVLASYQTHNQPQNTTLPAISSLPSMTIIFYLVEVRTGVIADRFVLLDDF VKFPSHEGIHFHADMLCILSMRHQLLHIVKIQEALGKFTEERCIGAMCDR DDQQVIARAREAQNAHVTQQQQNRQAVSNRPSVPNLLQSEKQDVNGPGAA DVEEAQDEAEQDESKETGLGNGMLKDAFYGGLMQRLLAYVYRRMRSEGNA PLFYRVIGQYSLLVMRRAQFLDDDHLLIRLGSFNGSEHGLQQHSMLARET CFFVVYCMSTTRIVNLFENRSTQLLRTFHMYREAFVGDEMEAASLPPLRH SVLDEEEGRDGDNNEGADPRRNGTNERAGRSWSNSATRRGTSDRVRRTRL ELSRIPMSRQVRMVSPYLDRSLFSYNPERSNVLTARRFAPAKDLGSVKFM SVETGELRFKLATEFSLLDGETDGERGFSEMEDGGVRQRMFLFHPLLPFV MAMEGHRPVNFHVYGHTE* back to topmRNA from alignment at tig00000050_pilon:697402..699558- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra1810.t1 ID=Ggra1810.t1|Name=Ggra1810.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2157bp|location=Sequence derived from alignment at tig00000050_pilon:697402..699558- (Gracilaria gracilis GNS1m male) ATGGATACCTTCGTAGATACAGCGGCTGCAGTTGCGCCAAAAATCCTGCC
ACCGCTGCTGGCTGCTGCCTGGCTGCCCTGCGTTGGCGGCCCCAAAGGGA
GCCGCCGCGCCTCGCCCCTCAACGGCCATGGGCGCCTTGTTTGGGGCGCA
GCTTCCATGACACGACGCCGTCGCCCCCGTCGTCGTGGCGTGCTCCAAGC
GCTCCGTCGTCGTGAAAGTGGCCACTTGTCGTGTCACGCCTTTCGCCGCG
CCGCCTACTCCGCCCTCGTCCCGGCCTCCACCTTCATCCATGTGCAGTCC
GTTCCCAACTTGTGCTTCCGCCGCTTCACCGCGTGCGGACAGTATCTCAT
AGCGCTCGATGCCAACAACCGTCTCATCGTGTTTCGTTTTGAGACCGGCG
GCCGCAAGATCGATTCCGTCTCTGTTGCCCGCCCCTCGCCGCGTCACCTC
TACGACACTGCTGCCTTTCCGCCCCCTTCGTCGCGCCTTCAGTCTCCCCT
CTTTTCGCAGCTCGATGCCCACTTTCAGATGCCCTCGCAGTCTAGTCATG
CCTCCTTGTTGTTATCTCTACCCGTTCCGCTCGTCGCTTCCACCGCGCAA
CAGACGCAATCGCCTCCTCACCCGCGGCAACTCCCGTCCTATACATGTCA
CTTTGCCCAGTTTTTCACCTACATGTATGCCATGTCTATCGTGTCTGGCA
CCGCGCACATTGCACGAGACTTTTCGATGAGCACGTCCAGTGGCAAGTAT
CTCGTACTTGCCTCCTACCAAACTCACAATCAACCTCAAAACACTACGCT
ACCGGCCATTTCATCGCTTCCCTCCATGACCATCATCTTCTATCTGGTTG
AGGTTCGCACCGGTGTCATAGCCGACCGCTTTGTTCTCTTGGATGATTTC
GTAAAATTCCCTTCGCACGAAGGCATCCATTTCCACGCCGATATGCTTTG
CATTTTGTCTATGAGGCACCAACTGTTGCATATAGTCAAGATACAGGAGG
CGTTGGGAAAGTTTACCGAAGAGCGATGCATTGGTGCCATGTGCGACAGA
GATGATCAGCAAGTCATTGCGCGCGCGCGAGAGGCACAAAATGCCCACGT
TACTCAACAACAACAGAACAGGCAAGCTGTGTCCAATCGACCATCAGTCC
CAAACCTGTTGCAGAGCGAAAAGCAAGATGTCAACGGGCCGGGCGCTGCA
GATGTGGAAGAGGCACAGGATGAAGCTGAACAGGACGAGTCCAAAGAGAC
TGGCTTGGGAAACGGAATGCTCAAGGATGCGTTTTACGGCGGACTTATGC
AGAGGTTGTTAGCATATGTTTATAGACGCATGCGTTCGGAGGGTAATGCA
CCATTGTTTTATCGTGTCATCGGACAGTATAGCCTTTTGGTGATGCGAAG
AGCACAATTTTTGGATGACGACCATTTGCTGATTCGTTTGGGATCTTTCA
ATGGGAGTGAGCATGGTCTTCAGCAGCATAGTATGTTGGCAAGGGAGACC
TGTTTCTTCGTCGTGTATTGCATGTCCACCACACGCATTGTCAACCTGTT
TGAGAACAGGTCCACCCAGCTTTTGCGAACGTTTCACATGTATAGGGAGG
CTTTTGTGGGTGACGAAATGGAAGCCGCTTCTTTGCCACCTCTACGGCAC
AGCGTGCTAGATGAAGAGGAAGGCAGAGATGGTGATAATAATGAAGGCGC
TGATCCTCGTAGGAATGGCACCAACGAACGAGCAGGCCGGTCGTGGTCCA
ACTCCGCGACTAGACGAGGCACTTCTGACAGAGTGCGAAGGACCAGACTG
GAATTATCGCGCATTCCTATGTCCAGGCAGGTGCGAATGGTATCGCCTTA
CTTGGACCGCTCGCTGTTCTCGTATAATCCAGAGAGAAGCAATGTCCTCA
CGGCTCGGCGATTTGCACCTGCCAAGGATTTGGGTAGCGTCAAGTTCATG
AGCGTGGAAACTGGCGAACTGAGATTCAAATTGGCGACGGAGTTTAGTTT
GCTCGATGGTGAGACGGATGGCGAGAGGGGTTTCTCGGAAATGGAGGACG
GGGGTGTGCGACAAAGAATGTTTCTTTTTCACCCGCTTTTACCGTTTGTC
ATGGCGATGGAGGGGCATCGTCCGGTGAACTTTCATGTTTATGGACACAC
TGAATGA back to topCoding sequence (CDS) from alignment at tig00000050_pilon:697402..699558- >Ggra1810.t1 ID=Ggra1810.t1|Name=Ggra1810.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2157bp|location=Sequence derived from alignment at tig00000050_pilon:697402..699558- (Gracilaria gracilis GNS1m male) ATGGATACCTTCGTAGATACAGCGGCTGCAGTTGCGCCAAAAATCCTGCC ACCGCTGCTGGCTGCTGCCTGGCTGCCCTGCGTTGGCGGCCCCAAAGGGA GCCGCCGCGCCTCGCCCCTCAACGGCCATGGGCGCCTTGTTTGGGGCGCA GCTTCCATGACACGACGCCGTCGCCCCCGTCGTCGTGGCGTGCTCCAAGC GCTCCGTCGTCGTGAAAGTGGCCACTTGTCGTGTCACGCCTTTCGCCGCG CCGCCTACTCCGCCCTCGTCCCGGCCTCCACCTTCATCCATGTGCAGTCC GTTCCCAACTTGTGCTTCCGCCGCTTCACCGCGTGCGGACAGTATCTCAT AGCGCTCGATGCCAACAACCGTCTCATCGTGTTTCGTTTTGAGACCGGCG GCCGCAAGATCGATTCCGTCTCTGTTGCCCGCCCCTCGCCGCGTCACCTC TACGACACTGCTGCCTTTCCGCCCCCTTCGTCGCGCCTTCAGTCTCCCCT CTTTTCGCAGCTCGATGCCCACTTTCAGATGCCCTCGCAGTCTAGTCATG CCTCCTTGTTGTTATCTCTACCCGTTCCGCTCGTCGCTTCCACCGCGCAA CAGACGCAATCGCCTCCTCACCCGCGGCAACTCCCGTCCTATACATGTCA CTTTGCCCAGTTTTTCACCTACATGTATGCCATGTCTATCGTGTCTGGCA CCGCGCACATTGCACGAGACTTTTCGATGAGCACGTCCAGTGGCAAGTAT CTCGTACTTGCCTCCTACCAAACTCACAATCAACCTCAAAACACTACGCT ACCGGCCATTTCATCGCTTCCCTCCATGACCATCATCTTCTATCTGGTTG AGGTTCGCACCGGTGTCATAGCCGACCGCTTTGTTCTCTTGGATGATTTC GTAAAATTCCCTTCGCACGAAGGCATCCATTTCCACGCCGATATGCTTTG CATTTTGTCTATGAGGCACCAACTGTTGCATATAGTCAAGATACAGGAGG CGTTGGGAAAGTTTACCGAAGAGCGATGCATTGGTGCCATGTGCGACAGA GATGATCAGCAAGTCATTGCGCGCGCGCGAGAGGCACAAAATGCCCACGT TACTCAACAACAACAGAACAGGCAAGCTGTGTCCAATCGACCATCAGTCC CAAACCTGTTGCAGAGCGAAAAGCAAGATGTCAACGGGCCGGGCGCTGCA GATGTGGAAGAGGCACAGGATGAAGCTGAACAGGACGAGTCCAAAGAGAC TGGCTTGGGAAACGGAATGCTCAAGGATGCGTTTTACGGCGGACTTATGC AGAGGTTGTTAGCATATGTTTATAGACGCATGCGTTCGGAGGGTAATGCA CCATTGTTTTATCGTGTCATCGGACAGTATAGCCTTTTGGTGATGCGAAG AGCACAATTTTTGGATGACGACCATTTGCTGATTCGTTTGGGATCTTTCA ATGGGAGTGAGCATGGTCTTCAGCAGCATAGTATGTTGGCAAGGGAGACC TGTTTCTTCGTCGTGTATTGCATGTCCACCACACGCATTGTCAACCTGTT TGAGAACAGGTCCACCCAGCTTTTGCGAACGTTTCACATGTATAGGGAGG CTTTTGTGGGTGACGAAATGGAAGCCGCTTCTTTGCCACCTCTACGGCAC AGCGTGCTAGATGAAGAGGAAGGCAGAGATGGTGATAATAATGAAGGCGC TGATCCTCGTAGGAATGGCACCAACGAACGAGCAGGCCGGTCGTGGTCCA ACTCCGCGACTAGACGAGGCACTTCTGACAGAGTGCGAAGGACCAGACTG GAATTATCGCGCATTCCTATGTCCAGGCAGGTGCGAATGGTATCGCCTTA CTTGGACCGCTCGCTGTTCTCGTATAATCCAGAGAGAAGCAATGTCCTCA CGGCTCGGCGATTTGCACCTGCCAAGGATTTGGGTAGCGTCAAGTTCATG AGCGTGGAAACTGGCGAACTGAGATTCAAATTGGCGACGGAGTTTAGTTT GCTCGATGGTGAGACGGATGGCGAGAGGGGTTTCTCGGAAATGGAGGACG GGGGTGTGCGACAAAGAATGTTTCTTTTTCACCCGCTTTTACCGTTTGTC ATGGCGATGGAGGGGCATCGTCCGGTGAACTTTCATGTTTATGGACACAC TGAATGA back to top
|