Ggra1807.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1807.t1
Unique NameGgra1807.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length627
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:685024..687283 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706294.1
PFAMsTPT
Max annot lvl2759|Eukaryota
KEGG koko:K15281
KEGG TC2.A.7.15
GOsGO:0003674,GO:0005215,GO:0005338,GO:0006810,GO:0008150,GO:0015165,GO:0015780,GO:0015931,GO:0015932,GO:0022857,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0090481,GO:1901264,GO:1901505
Evalue1.21e-61
EggNOG OGsCOG5070@1|root,KOG1444@2759|Eukaryota
Descriptionnucleotide-sugar transmembrane transporter activity
COG categoryGOU
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1807Ggra1807Gracilaria gracilis GNS1m malegenetig00000050_pilon 685024..687283 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1807.t1Ggra1807.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 685024..687283 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1807.t1.start1Ggra1807.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 685024..685026 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1807.t1.CDS1Ggra1807.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 685024..685862 +
Ggra1807.t1.CDS2Ggra1807.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000050_pilon 686242..687283 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1807.t1.exon1Ggra1807.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 685024..685862 +
Ggra1807.t1.exon2Ggra1807.t1.exon2Gracilaria gracilis GNS1m maleexontig00000050_pilon 686242..687283 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1807.t1.intron1Ggra1807.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000050_pilon 685863..686241 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1807.t1.stop1Ggra1807.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 687281..687283 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1807.t1 ID=Ggra1807.t1|Name=Ggra1807.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=627bp
MMMGSASAPEHAPLYSALSSLKPLTDALSCISLPSRAHDVLLSHSDGALR
FSTAAPSHQASVILPPSAFTQLRVSHAALQIRLNLSALQDALAVLSAADC
AVELWFVDHSVEAQAVLDGSVVHVRVSALDLAQPPLLMQPTDAPELSAFI
VGADAFRDALQDLDYAGADLVEVMFLSEPPSLRLVSPAGCAEEMARLTIE
LSQQVAGFQALKCDHAHSVVLAREHLLRTARAVVAAESVKLVLNEAAMLS
IVCRLRGASADDRSFVEFVLLSQDEESDADYGLSSLSGVFVNKACLSAFQ
FGHTITLMLLQLVVSVSALTILRLTRLVTIPQRSTKQMAVLILPAVFFIA
NVTVGLLALKLVNIPMFSAFRRLSVLSVMILEYFVLRKTASRHIIATVFV
MVAGSFLAGLGDLAFDPLGYCLVFLNNFITAANLVSIKKASQIVRLDALP
LFYYVSLISLPIVFLLSFVSGELSQAISDVYSRPDLHSPAFVFALSLSAA
SAFLINFFTNMCTQLTSPLTTAITGQMKNVLQTILGIFAFGYVVTPLNLF
GLAVALTGSLLFGRQKFREAQSAKNAKPARASSSGHLSVPVPQASADHAY
ERKLPEFESASPLLRQSAKLVTVAAG*
back to top

spliced messenger RNA

>Ggra1807.t1 ID=Ggra1807.t1|Name=Ggra1807.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1881bp|location=Sequence derived from alignment at tig00000050_pilon:685024..687283+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGATGGGCAGCGCGTCCGCGCCGGAGCACGCGCCGCTGTACAGCGC
GCTGTCGTCGCTCAAGCCGCTCACCGACGCGCTGTCGTGCATCAGTCTGC
CGTCGCGCGCGCACGACGTGCTGCTGTCGCACAGCGACGGCGCGCTGCGC
TTCAGCACGGCCGCGCCGTCGCACCAGGCCAGCGTCATCCTGCCGCCGTC
CGCCTTCACGCAGCTGCGCGTGTCGCACGCCGCGCTGCAGATCCGGCTCA
ACCTGTCCGCGCTGCAGGACGCGCTGGCCGTGCTCAGCGCCGCCGACTGC
GCCGTCGAGCTGTGGTTCGTGGACCACAGCGTGGAGGCGCAGGCGGTGTT
GGACGGCAGCGTTGTGCATGTGCGCGTCAGCGCGCTCGACTTGGCGCAGC
CGCCTTTGCTGATGCAGCCCACCGACGCGCCGGAGCTGAGTGCGTTCATT
GTGGGCGCCGATGCGTTTCGCGACGCGTTACAAGACCTGGACTACGCGGG
CGCCGATCTGGTGGAGGTGATGTTTCTGTCGGAGCCACCCAGCCTGAGAC
TGGTGTCGCCGGCCGGCTGCGCGGAGGAGATGGCGCGTCTCACCATCGAG
CTGTCGCAGCAGGTGGCGGGCTTCCAGGCGCTCAAGTGCGACCACGCGCA
CAGCGTGGTGCTGGCGCGGGAGCATCTGCTGCGGACGGCGCGCGCCGTTG
TGGCCGCGGAGAGCGTCAAGCTGGTGCTCAACGAGGCAGCGATGCTTAGC
ATCGTGTGTCGACTACGGGGCGCCAGCGCGGACGACCGCAGCTTTGTGGA
GTTCGTGCTGCTGTCGCAGGACGAAGAGTCGGATGCTGATTATGGCCTCT
CTTCGTTGAGCGGCGTCTTTGTTAACAAGGCCTGTCTCTCCGCCTTTCAG
TTCGGACATACTATCACTTTAATGCTGTTGCAGCTTGTGGTTTCTGTGTC
CGCTCTCACCATTCTGCGCCTCACGCGACTTGTCACAATTCCGCAACGTT
CTACCAAACAGATGGCTGTGCTCATCCTGCCCGCCGTTTTCTTTATTGCC
AACGTTACCGTTGGATTGCTCGCGCTCAAGCTCGTCAACATTCCCATGTT
TTCCGCCTTCAGACGCCTCAGCGTGTTGTCGGTTATGATTTTGGAGTATT
TTGTACTACGAAAGACCGCCTCACGTCATATCATCGCCACCGTCTTTGTC
ATGGTTGCTGGCAGCTTTCTTGCCGGCTTAGGCGATCTCGCATTCGATCC
TCTTGGTTACTGTCTAGTCTTTCTCAACAACTTTATCACTGCCGCAAACC
TGGTTTCCATTAAGAAAGCCTCTCAAATCGTCCGTTTAGACGCACTACCT
CTTTTCTACTACGTCTCCCTTATCTCGCTACCAATCGTTTTCTTGCTTAG
TTTTGTTTCCGGCGAACTCTCCCAAGCCATTTCCGATGTCTACTCCCGCC
CGGACTTGCACTCTCCCGCCTTTGTCTTCGCGCTATCGTTATCTGCCGCC
TCCGCCTTTCTTATCAACTTTTTCACCAACATGTGTACACAACTCACCTC
CCCTCTCACAACCGCCATCACCGGTCAAATGAAGAACGTTCTGCAGACCA
TTCTTGGCATTTTTGCGTTTGGATACGTTGTCACCCCGCTCAATCTTTTC
GGATTGGCTGTCGCCTTGACCGGTTCGTTGTTGTTTGGCAGACAAAAGTT
CAGAGAAGCTCAGAGCGCCAAGAACGCAAAACCCGCCCGAGCTTCTTCCA
GTGGTCATTTGTCGGTTCCCGTCCCACAGGCTTCAGCTGACCACGCGTAT
GAAAGAAAGCTACCTGAATTCGAGTCTGCGTCACCATTGTTGCGGCAGAG
CGCCAAGTTGGTAACTGTGGCTGCAGGATAA
back to top

protein sequence of Ggra1807.t1

>Ggra1807.t1 ID=Ggra1807.t1|Name=Ggra1807.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=627bp
MMMGSASAPEHAPLYSALSSLKPLTDALSCISLPSRAHDVLLSHSDGALR
FSTAAPSHQASVILPPSAFTQLRVSHAALQIRLNLSALQDALAVLSAADC
AVELWFVDHSVEAQAVLDGSVVHVRVSALDLAQPPLLMQPTDAPELSAFI
VGADAFRDALQDLDYAGADLVEVMFLSEPPSLRLVSPAGCAEEMARLTIE
LSQQVAGFQALKCDHAHSVVLAREHLLRTARAVVAAESVKLVLNEAAMLS
IVCRLRGASADDRSFVEFVLLSQDEESDADYGLSSLSGVFVNKACLSAFQ
FGHTITLMLLQLVVSVSALTILRLTRLVTIPQRSTKQMAVLILPAVFFIA
NVTVGLLALKLVNIPMFSAFRRLSVLSVMILEYFVLRKTASRHIIATVFV
MVAGSFLAGLGDLAFDPLGYCLVFLNNFITAANLVSIKKASQIVRLDALP
LFYYVSLISLPIVFLLSFVSGELSQAISDVYSRPDLHSPAFVFALSLSAA
SAFLINFFTNMCTQLTSPLTTAITGQMKNVLQTILGIFAFGYVVTPLNLF
GLAVALTGSLLFGRQKFREAQSAKNAKPARASSSGHLSVPVPQASADHAY
ERKLPEFESASPLLRQSAKLVTVAAG*
back to top

mRNA from alignment at tig00000050_pilon:685024..687283+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1807.t1 ID=Ggra1807.t1|Name=Ggra1807.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2260bp|location=Sequence derived from alignment at tig00000050_pilon:685024..687283+ (Gracilaria gracilis GNS1m male)
ATGATGATGGGCAGCGCGTCCGCGCCGGAGCACGCGCCGCTGTACAGCGC
GCTGTCGTCGCTCAAGCCGCTCACCGACGCGCTGTCGTGCATCAGTCTGC
CGTCGCGCGCGCACGACGTGCTGCTGTCGCACAGCGACGGCGCGCTGCGC
TTCAGCACGGCCGCGCCGTCGCACCAGGCCAGCGTCATCCTGCCGCCGTC
CGCCTTCACGCAGCTGCGCGTGTCGCACGCCGCGCTGCAGATCCGGCTCA
ACCTGTCCGCGCTGCAGGACGCGCTGGCCGTGCTCAGCGCCGCCGACTGC
GCCGTCGAGCTGTGGTTCGTGGACCACAGCGTGGAGGCGCAGGCGGTGTT
GGACGGCAGCGTTGTGCATGTGCGCGTCAGCGCGCTCGACTTGGCGCAGC
CGCCTTTGCTGATGCAGCCCACCGACGCGCCGGAGCTGAGTGCGTTCATT
GTGGGCGCCGATGCGTTTCGCGACGCGTTACAAGACCTGGACTACGCGGG
CGCCGATCTGGTGGAGGTGATGTTTCTGTCGGAGCCACCCAGCCTGAGAC
TGGTGTCGCCGGCCGGCTGCGCGGAGGAGATGGCGCGTCTCACCATCGAG
CTGTCGCAGCAGGTGGCGGGCTTCCAGGCGCTCAAGTGCGACCACGCGCA
CAGCGTGGTGCTGGCGCGGGAGCATCTGCTGCGGACGGCGCGCGCCGTTG
TGGCCGCGGAGAGCGTCAAGCTGGTGCTCAACGAGGCAGCGATGCTTAGC
ATCGTGTGTCGACTACGGGGCGCCAGCGCGGACGACCGCAGCTTTGTGGA
GTTCGTGCTGCTGTCGCAGGACGAAGAGTCGGATGCTGAGTGAGTGAAAA
AACAAGGGGCGCGCCCAACCGTCGCGCTGCATTGGCAACGTGGCCGCACG
CACACGCCAAGCGCCACCGTGCGTGCGCCGCTGCACCTGTGTGACGATGA
GCGTGCGTGTGTGTCAGCGAGCGCAATGCACAATGCCGCGCGCACCGGCA
CCCCCCAAACCACTTCGAATCCTCTTTCTTCGCTCTTCACTCCCCATCCG
TTAGTCGCTTTGTGCCGTCGCTTGTCACCGCTTTTGTTCGGCCGTCGCGC
GGCTTCGTCGCCACGCTTTCACCTCCGCCACCACGGCTGTTCAACATCTT
TCTCGTGCGCCCTCGGCCACGCATGATGCCGTTCCTTCGAATGCCTACGT
GACTGCCGTTGTGTTCAGTTATGGCCTCTCTTCGTTGAGCGGCGTCTTTG
TTAACAAGGCCTGTCTCTCCGCCTTTCAGTTCGGACATACTATCACTTTA
ATGCTGTTGCAGCTTGTGGTTTCTGTGTCCGCTCTCACCATTCTGCGCCT
CACGCGACTTGTCACAATTCCGCAACGTTCTACCAAACAGATGGCTGTGC
TCATCCTGCCCGCCGTTTTCTTTATTGCCAACGTTACCGTTGGATTGCTC
GCGCTCAAGCTCGTCAACATTCCCATGTTTTCCGCCTTCAGACGCCTCAG
CGTGTTGTCGGTTATGATTTTGGAGTATTTTGTACTACGAAAGACCGCCT
CACGTCATATCATCGCCACCGTCTTTGTCATGGTTGCTGGCAGCTTTCTT
GCCGGCTTAGGCGATCTCGCATTCGATCCTCTTGGTTACTGTCTAGTCTT
TCTCAACAACTTTATCACTGCCGCAAACCTGGTTTCCATTAAGAAAGCCT
CTCAAATCGTCCGTTTAGACGCACTACCTCTTTTCTACTACGTCTCCCTT
ATCTCGCTACCAATCGTTTTCTTGCTTAGTTTTGTTTCCGGCGAACTCTC
CCAAGCCATTTCCGATGTCTACTCCCGCCCGGACTTGCACTCTCCCGCCT
TTGTCTTCGCGCTATCGTTATCTGCCGCCTCCGCCTTTCTTATCAACTTT
TTCACCAACATGTGTACACAACTCACCTCCCCTCTCACAACCGCCATCAC
CGGTCAAATGAAGAACGTTCTGCAGACCATTCTTGGCATTTTTGCGTTTG
GATACGTTGTCACCCCGCTCAATCTTTTCGGATTGGCTGTCGCCTTGACC
GGTTCGTTGTTGTTTGGCAGACAAAAGTTCAGAGAAGCTCAGAGCGCCAA
GAACGCAAAACCCGCCCGAGCTTCTTCCAGTGGTCATTTGTCGGTTCCCG
TCCCACAGGCTTCAGCTGACCACGCGTATGAAAGAAAGCTACCTGAATTC
GAGTCTGCGTCACCATTGTTGCGGCAGAGCGCCAAGTTGGTAACTGTGGC
TGCAGGATAA
back to top

Coding sequence (CDS) from alignment at tig00000050_pilon:685024..687283+

>Ggra1807.t1 ID=Ggra1807.t1|Name=Ggra1807.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1881bp|location=Sequence derived from alignment at tig00000050_pilon:685024..687283+ (Gracilaria gracilis GNS1m male)
ATGATGATGGGCAGCGCGTCCGCGCCGGAGCACGCGCCGCTGTACAGCGC
GCTGTCGTCGCTCAAGCCGCTCACCGACGCGCTGTCGTGCATCAGTCTGC
CGTCGCGCGCGCACGACGTGCTGCTGTCGCACAGCGACGGCGCGCTGCGC
TTCAGCACGGCCGCGCCGTCGCACCAGGCCAGCGTCATCCTGCCGCCGTC
CGCCTTCACGCAGCTGCGCGTGTCGCACGCCGCGCTGCAGATCCGGCTCA
ACCTGTCCGCGCTGCAGGACGCGCTGGCCGTGCTCAGCGCCGCCGACTGC
GCCGTCGAGCTGTGGTTCGTGGACCACAGCGTGGAGGCGCAGGCGGTGTT
GGACGGCAGCGTTGTGCATGTGCGCGTCAGCGCGCTCGACTTGGCGCAGC
CGCCTTTGCTGATGCAGCCCACCGACGCGCCGGAGCTGAGTGCGTTCATT
GTGGGCGCCGATGCGTTTCGCGACGCGTTACAAGACCTGGACTACGCGGG
CGCCGATCTGGTGGAGGTGATGTTTCTGTCGGAGCCACCCAGCCTGAGAC
TGGTGTCGCCGGCCGGCTGCGCGGAGGAGATGGCGCGTCTCACCATCGAG
CTGTCGCAGCAGGTGGCGGGCTTCCAGGCGCTCAAGTGCGACCACGCGCA
CAGCGTGGTGCTGGCGCGGGAGCATCTGCTGCGGACGGCGCGCGCCGTTG
TGGCCGCGGAGAGCGTCAAGCTGGTGCTCAACGAGGCAGCGATGCTTAGC
ATCGTGTGTCGACTACGGGGCGCCAGCGCGGACGACCGCAGCTTTGTGGA
GTTCGTGCTGCTGTCGCAGGACGAAGAGTCGGATGCTGATTATGGCCTCT
CTTCGTTGAGCGGCGTCTTTGTTAACAAGGCCTGTCTCTCCGCCTTTCAG
TTCGGACATACTATCACTTTAATGCTGTTGCAGCTTGTGGTTTCTGTGTC
CGCTCTCACCATTCTGCGCCTCACGCGACTTGTCACAATTCCGCAACGTT
CTACCAAACAGATGGCTGTGCTCATCCTGCCCGCCGTTTTCTTTATTGCC
AACGTTACCGTTGGATTGCTCGCGCTCAAGCTCGTCAACATTCCCATGTT
TTCCGCCTTCAGACGCCTCAGCGTGTTGTCGGTTATGATTTTGGAGTATT
TTGTACTACGAAAGACCGCCTCACGTCATATCATCGCCACCGTCTTTGTC
ATGGTTGCTGGCAGCTTTCTTGCCGGCTTAGGCGATCTCGCATTCGATCC
TCTTGGTTACTGTCTAGTCTTTCTCAACAACTTTATCACTGCCGCAAACC
TGGTTTCCATTAAGAAAGCCTCTCAAATCGTCCGTTTAGACGCACTACCT
CTTTTCTACTACGTCTCCCTTATCTCGCTACCAATCGTTTTCTTGCTTAG
TTTTGTTTCCGGCGAACTCTCCCAAGCCATTTCCGATGTCTACTCCCGCC
CGGACTTGCACTCTCCCGCCTTTGTCTTCGCGCTATCGTTATCTGCCGCC
TCCGCCTTTCTTATCAACTTTTTCACCAACATGTGTACACAACTCACCTC
CCCTCTCACAACCGCCATCACCGGTCAAATGAAGAACGTTCTGCAGACCA
TTCTTGGCATTTTTGCGTTTGGATACGTTGTCACCCCGCTCAATCTTTTC
GGATTGGCTGTCGCCTTGACCGGTTCGTTGTTGTTTGGCAGACAAAAGTT
CAGAGAAGCTCAGAGCGCCAAGAACGCAAAACCCGCCCGAGCTTCTTCCA
GTGGTCATTTGTCGGTTCCCGTCCCACAGGCTTCAGCTGACCACGCGTAT
GAAAGAAAGCTACCTGAATTCGAGTCTGCGTCACCATTGTTGCGGCAGAG
CGCCAAGTTGGTAACTGTGGCTGCAGGATAA
back to top