Ggra1769.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1769.t1
Unique Name	Ggra1769.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	541

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000050_pilon	contig	tig00000050_pilon:579986..581608 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1769	Ggra1769	Gracilaria gracilis GNS1m male	gene	tig00000050_pilon 579986..581608 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1769.t1.start1	Ggra1769.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000050_pilon 579986..579988 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1769.t1.CDS1	Ggra1769.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000050_pilon 579986..581608 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1769.t1.exon1	Ggra1769.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000050_pilon 579986..581608 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1769.t1.stop1	Ggra1769.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000050_pilon 581606..581608 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1769.t1	Ggra1769.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000050_pilon 579986..581608 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000050_pilon:579986..581608+
coding sequence from alignment at tig00000050_pilon:579986..581608+

mRNA sequence

>Ggra1769.t1 ID=Ggra1769.t1|Name=Ggra1769.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=541bp
MRQLSVPFSASSPPGAPPISLCAPADDDARRHLRKAPPPAAADPLAWHHP
TPSWQSVRHHILALARLQLLHDASSRLQVEKDFSSEDLMLDSPKVLSSIS
MLNTMDETPPIVNKAHDLLTHVLTDFSALDGWRLEQIGDHLAGFLRGHNS
LENIERMVRRVLLGSHHDLPALDRELDRFQDAMNARWAPTQLSNRAQVDK
LKQMLMSSGTVDLVLEDLVQSQLSRTLSIPSSHAIGIIAAMECGYRPTAE
KYVLDLYYAIKPNVERGRLLMTPLIPRWLRNAMLPIFVRDNDNAVDGLLT
GDRWLRRTGVECRSADSYPVYASYSESRPAGRIIPLMPADHMEFKADSHL
SKFLRALFSGRDGGACRTLHTHLAYSARTCCVPQGRVVARIWARACSSWA
NRYGPELVANIEKVVGVRALAAIYAGGGGFVEFRNGFCERIISGVFTRVF
ELDAAGGTLSGSPGIGGSYRIVAEGNLDRRDVEVLATLINAVESRGVEID
LRGVKRVPFLYGSVNFILEGKRTGVYEMWCKQRIKLTFAQ*

spliced messenger RNA

>Ggra1769.t1 ID=Ggra1769.t1|Name=Ggra1769.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1623bp|location=Sequence derived from alignment at tig00000050_pilon:579986..581608+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCCAGCTTTCCGTCCCCTTCTCCGCTTCCTCGCCCCCCGGCGCTCC
CCCTATCTCCCTCTGCGCCCCTGCCGATGACGACGCCCGCCGTCACCTTC
GCAAGGCCCCACCCCCCGCCGCCGCCGACCCGCTCGCGTGGCACCACCCC
ACTCCGTCATGGCAGTCCGTCCGCCACCACATTCTGGCGCTTGCGCGACT
GCAACTTCTCCATGACGCCTCGTCCAGGCTGCAGGTCGAAAAGGACTTCT
CCTCCGAAGACCTCATGCTAGACTCCCCCAAAGTGCTCTCGTCCATCTCC
ATGCTCAACACAATGGATGAAACCCCGCCCATCGTCAACAAGGCCCATGA
TCTGCTCACTCACGTCCTCACCGACTTCTCCGCCTTGGACGGCTGGAGAC
TCGAGCAGATTGGCGACCATCTCGCCGGTTTCCTCCGTGGTCACAACAGT
CTGGAAAACATAGAACGCATGGTGCGCCGCGTGCTACTAGGCAGCCACCA
CGACCTCCCGGCGTTGGACAGGGAGCTCGATCGTTTCCAGGACGCCATGA
ATGCAAGATGGGCGCCCACGCAGCTCTCCAACCGCGCCCAAGTGGACAAG
CTCAAACAAATGCTCATGAGCAGCGGAACTGTTGATCTCGTTCTGGAAGA
CCTTGTTCAATCGCAGTTATCGAGAACACTATCGATACCATCCAGCCACG
CCATCGGCATCATTGCCGCCATGGAATGCGGCTACCGCCCGACCGCAGAG
AAGTACGTGCTAGACCTCTACTATGCCATCAAACCGAACGTCGAGAGGGG
AAGGCTGCTTATGACCCCTCTCATCCCTAGATGGCTTCGCAATGCCATGC
TTCCCATCTTCGTGCGGGATAACGACAATGCCGTAGATGGTTTGTTGACG
GGTGACAGATGGCTCCGTCGAACTGGCGTTGAGTGCCGTTCGGCAGATAG
TTATCCTGTGTACGCTTCTTACTCCGAGTCCCGCCCTGCGGGAAGGATCA
TCCCGCTTATGCCTGCCGATCACATGGAGTTCAAAGCCGATTCTCATCTC
TCAAAATTCCTTCGCGCGCTCTTCAGCGGTCGTGATGGTGGCGCGTGTAG
GACTCTTCATACACATCTGGCATATTCTGCAAGGACATGTTGCGTTCCAC
AGGGGCGCGTTGTGGCCAGGATCTGGGCTCGCGCATGTTCTAGTTGGGCA
AATCGATATGGCCCCGAACTGGTTGCAAACATTGAGAAAGTGGTTGGGGT
TAGAGCGTTGGCTGCCATATATGCTGGCGGCGGTGGATTCGTTGAATTTC
GCAATGGATTCTGTGAACGTATTATTTCAGGTGTGTTCACAAGAGTGTTC
GAGCTTGATGCCGCAGGGGGCACTCTAAGTGGCTCTCCTGGAATCGGTGG
TTCGTACCGTATTGTGGCAGAAGGAAACCTGGATCGACGTGATGTGGAGG
TCCTTGCAACTTTGATTAACGCGGTTGAAAGCAGAGGAGTTGAAATTGAT
CTGAGAGGGGTCAAGCGTGTCCCTTTTCTGTATGGTTCAGTGAACTTTAT
CCTGGAAGGAAAGCGTACAGGCGTGTACGAGATGTGGTGTAAACAAAGGA
TAAAGCTGACCTTCGCTCAATAG

protein sequence of Ggra1769.t1

>Ggra1769.t1 ID=Ggra1769.t1|Name=Ggra1769.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=541bp
MRQLSVPFSASSPPGAPPISLCAPADDDARRHLRKAPPPAAADPLAWHHP
TPSWQSVRHHILALARLQLLHDASSRLQVEKDFSSEDLMLDSPKVLSSIS
MLNTMDETPPIVNKAHDLLTHVLTDFSALDGWRLEQIGDHLAGFLRGHNS
LENIERMVRRVLLGSHHDLPALDRELDRFQDAMNARWAPTQLSNRAQVDK
LKQMLMSSGTVDLVLEDLVQSQLSRTLSIPSSHAIGIIAAMECGYRPTAE
KYVLDLYYAIKPNVERGRLLMTPLIPRWLRNAMLPIFVRDNDNAVDGLLT
GDRWLRRTGVECRSADSYPVYASYSESRPAGRIIPLMPADHMEFKADSHL
SKFLRALFSGRDGGACRTLHTHLAYSARTCCVPQGRVVARIWARACSSWA
NRYGPELVANIEKVVGVRALAAIYAGGGGFVEFRNGFCERIISGVFTRVF
ELDAAGGTLSGSPGIGGSYRIVAEGNLDRRDVEVLATLINAVESRGVEID
LRGVKRVPFLYGSVNFILEGKRTGVYEMWCKQRIKLTFAQ*

mRNA from alignment at tig00000050_pilon:579986..581608+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1769.t1 ID=Ggra1769.t1|Name=Ggra1769.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1623bp|location=Sequence derived from alignment at tig00000050_pilon:579986..581608+ (Gracilaria gracilis GNS1m male)
ATGCGCCAGCTTTCCGTCCCCTTCTCCGCTTCCTCGCCCCCCGGCGCTCC
CCCTATCTCCCTCTGCGCCCCTGCCGATGACGACGCCCGCCGTCACCTTC
GCAAGGCCCCACCCCCCGCCGCCGCCGACCCGCTCGCGTGGCACCACCCC
ACTCCGTCATGGCAGTCCGTCCGCCACCACATTCTGGCGCTTGCGCGACT
GCAACTTCTCCATGACGCCTCGTCCAGGCTGCAGGTCGAAAAGGACTTCT
CCTCCGAAGACCTCATGCTAGACTCCCCCAAAGTGCTCTCGTCCATCTCC
ATGCTCAACACAATGGATGAAACCCCGCCCATCGTCAACAAGGCCCATGA
TCTGCTCACTCACGTCCTCACCGACTTCTCCGCCTTGGACGGCTGGAGAC
TCGAGCAGATTGGCGACCATCTCGCCGGTTTCCTCCGTGGTCACAACAGT
CTGGAAAACATAGAACGCATGGTGCGCCGCGTGCTACTAGGCAGCCACCA
CGACCTCCCGGCGTTGGACAGGGAGCTCGATCGTTTCCAGGACGCCATGA
ATGCAAGATGGGCGCCCACGCAGCTCTCCAACCGCGCCCAAGTGGACAAG
CTCAAACAAATGCTCATGAGCAGCGGAACTGTTGATCTCGTTCTGGAAGA
CCTTGTTCAATCGCAGTTATCGAGAACACTATCGATACCATCCAGCCACG
CCATCGGCATCATTGCCGCCATGGAATGCGGCTACCGCCCGACCGCAGAG
AAGTACGTGCTAGACCTCTACTATGCCATCAAACCGAACGTCGAGAGGGG
AAGGCTGCTTATGACCCCTCTCATCCCTAGATGGCTTCGCAATGCCATGC
TTCCCATCTTCGTGCGGGATAACGACAATGCCGTAGATGGTTTGTTGACG
GGTGACAGATGGCTCCGTCGAACTGGCGTTGAGTGCCGTTCGGCAGATAG
TTATCCTGTGTACGCTTCTTACTCCGAGTCCCGCCCTGCGGGAAGGATCA
TCCCGCTTATGCCTGCCGATCACATGGAGTTCAAAGCCGATTCTCATCTC
TCAAAATTCCTTCGCGCGCTCTTCAGCGGTCGTGATGGTGGCGCGTGTAG
GACTCTTCATACACATCTGGCATATTCTGCAAGGACATGTTGCGTTCCAC
AGGGGCGCGTTGTGGCCAGGATCTGGGCTCGCGCATGTTCTAGTTGGGCA
AATCGATATGGCCCCGAACTGGTTGCAAACATTGAGAAAGTGGTTGGGGT
TAGAGCGTTGGCTGCCATATATGCTGGCGGCGGTGGATTCGTTGAATTTC
GCAATGGATTCTGTGAACGTATTATTTCAGGTGTGTTCACAAGAGTGTTC
GAGCTTGATGCCGCAGGGGGCACTCTAAGTGGCTCTCCTGGAATCGGTGG
TTCGTACCGTATTGTGGCAGAAGGAAACCTGGATCGACGTGATGTGGAGG
TCCTTGCAACTTTGATTAACGCGGTTGAAAGCAGAGGAGTTGAAATTGAT
CTGAGAGGGGTCAAGCGTGTCCCTTTTCTGTATGGTTCAGTGAACTTTAT
CCTGGAAGGAAAGCGTACAGGCGTGTACGAGATGTGGTGTAAACAAAGGA
TAAAGCTGACCTTCGCTCAATAG

Coding sequence (CDS) from alignment at tig00000050_pilon:579986..581608+

>Ggra1769.t1 ID=Ggra1769.t1|Name=Ggra1769.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1623bp|location=Sequence derived from alignment at tig00000050_pilon:579986..581608+ (Gracilaria gracilis GNS1m male)
ATGCGCCAGCTTTCCGTCCCCTTCTCCGCTTCCTCGCCCCCCGGCGCTCC
CCCTATCTCCCTCTGCGCCCCTGCCGATGACGACGCCCGCCGTCACCTTC
GCAAGGCCCCACCCCCCGCCGCCGCCGACCCGCTCGCGTGGCACCACCCC
ACTCCGTCATGGCAGTCCGTCCGCCACCACATTCTGGCGCTTGCGCGACT
GCAACTTCTCCATGACGCCTCGTCCAGGCTGCAGGTCGAAAAGGACTTCT
CCTCCGAAGACCTCATGCTAGACTCCCCCAAAGTGCTCTCGTCCATCTCC
ATGCTCAACACAATGGATGAAACCCCGCCCATCGTCAACAAGGCCCATGA
TCTGCTCACTCACGTCCTCACCGACTTCTCCGCCTTGGACGGCTGGAGAC
TCGAGCAGATTGGCGACCATCTCGCCGGTTTCCTCCGTGGTCACAACAGT
CTGGAAAACATAGAACGCATGGTGCGCCGCGTGCTACTAGGCAGCCACCA
CGACCTCCCGGCGTTGGACAGGGAGCTCGATCGTTTCCAGGACGCCATGA
ATGCAAGATGGGCGCCCACGCAGCTCTCCAACCGCGCCCAAGTGGACAAG
CTCAAACAAATGCTCATGAGCAGCGGAACTGTTGATCTCGTTCTGGAAGA
CCTTGTTCAATCGCAGTTATCGAGAACACTATCGATACCATCCAGCCACG
CCATCGGCATCATTGCCGCCATGGAATGCGGCTACCGCCCGACCGCAGAG
AAGTACGTGCTAGACCTCTACTATGCCATCAAACCGAACGTCGAGAGGGG
AAGGCTGCTTATGACCCCTCTCATCCCTAGATGGCTTCGCAATGCCATGC
TTCCCATCTTCGTGCGGGATAACGACAATGCCGTAGATGGTTTGTTGACG
GGTGACAGATGGCTCCGTCGAACTGGCGTTGAGTGCCGTTCGGCAGATAG
TTATCCTGTGTACGCTTCTTACTCCGAGTCCCGCCCTGCGGGAAGGATCA
TCCCGCTTATGCCTGCCGATCACATGGAGTTCAAAGCCGATTCTCATCTC
TCAAAATTCCTTCGCGCGCTCTTCAGCGGTCGTGATGGTGGCGCGTGTAG
GACTCTTCATACACATCTGGCATATTCTGCAAGGACATGTTGCGTTCCAC
AGGGGCGCGTTGTGGCCAGGATCTGGGCTCGCGCATGTTCTAGTTGGGCA
AATCGATATGGCCCCGAACTGGTTGCAAACATTGAGAAAGTGGTTGGGGT
TAGAGCGTTGGCTGCCATATATGCTGGCGGCGGTGGATTCGTTGAATTTC
GCAATGGATTCTGTGAACGTATTATTTCAGGTGTGTTCACAAGAGTGTTC
GAGCTTGATGCCGCAGGGGGCACTCTAAGTGGCTCTCCTGGAATCGGTGG
TTCGTACCGTATTGTGGCAGAAGGAAACCTGGATCGACGTGATGTGGAGG
TCCTTGCAACTTTGATTAACGCGGTTGAAAGCAGAGGAGTTGAAATTGAT
CTGAGAGGGGTCAAGCGTGTCCCTTTTCTGTATGGTTCAGTGAACTTTAT
CCTGGAAGGAAAGCGTACAGGCGTGTACGAGATGTGGTGTAAACAAAGGA
TAAAGCTGACCTTCGCTCAATAG