Ggra1759.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1759.t1
Unique NameGgra1759.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length430
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:559578..561104 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1759Ggra1759Gracilaria gracilis GNS1m malegenetig00000050_pilon 559578..561104 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1759.t1Ggra1759.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 559578..561104 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1759.t1.stop1Ggra1759.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 559578..559580 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1759.t1.CDS1Ggra1759.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 559578..560299 -
Ggra1759.t1.CDS2Ggra1759.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000050_pilon 560405..560538 -
Ggra1759.t1.CDS3Ggra1759.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000050_pilon 560587..560871 -
Ggra1759.t1.CDS4Ggra1759.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000050_pilon 560956..561104 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1759.t1.exon1Ggra1759.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 559578..560299 -
Ggra1759.t1.exon2Ggra1759.t1.exon2Gracilaria gracilis GNS1m maleexontig00000050_pilon 560405..560538 -
Ggra1759.t1.exon3Ggra1759.t1.exon3Gracilaria gracilis GNS1m maleexontig00000050_pilon 560587..560871 -
Ggra1759.t1.exon4Ggra1759.t1.exon4Gracilaria gracilis GNS1m maleexontig00000050_pilon 560956..561104 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1759.t1.intron1Ggra1759.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000050_pilon 560300..560404 -
Ggra1759.t1.intron2Ggra1759.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000050_pilon 560539..560586 -
Ggra1759.t1.intron3Ggra1759.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000050_pilon 560872..560955 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1759.t1.start1Ggra1759.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 561102..561104 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1759.t1 ID=Ggra1759.t1|Name=Ggra1759.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=430bp
MSRPSSQAQAPSRQSSVPQPVPPRYHSQASAILRAIGDLKKAIDDFLNKI
ENALYVPYEAARARKDFDTISTMLLNLEKIIEERDILHMRDRDYIGPGKP
NGSTIDELLDKAVKQKTTVDAEFHKLTSAAAAAANAAAAASRWRAPFDAS
EFCENPNCLANLDLSLLARVCKCHKVFRADIHPRRIVQFEKSMYESACLS
PQLSEMLYATCRLANSNTKAMSFLSRSIRSMYKKVCEICRESGFVSADVQ
DVLKDIDRINSVAPLNPSPRQKERVDFLEKVCSEEKTVQDPFTMSGCGRN
VYKQGVRMVDAIELNHGLEQKYAHINAVVSLKSVDELGLRVKGDPKEGIG
MKLDLPVCDEPTTMNPKAESFELPGDIMGDQIEVYSVTYQEWRIAVVSGK
LSDGRHVLNFNDGVVEHVMLYERLWRPVA*
back to top

spliced messenger RNA

>Ggra1759.t1 ID=Ggra1759.t1|Name=Ggra1759.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1290bp|location=Sequence derived from alignment at tig00000050_pilon:559578..561104- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCGCCCAAGCAGCCAAGCTCAAGCTCCATCACGCCAATCTTCTGT
TCCCCAACCAGTACCCCCACGCTATCATTCGCAAGCCTCCGCAATTCTCC
GCGCAATAGGTGACCTTAAAAAAGCCATTGACGACTTTCTAAACAAAATT
GAAAATGCGCTCTACGTTCCTTACGAAGCCGCTCGGGCACGAAAGGATTT
CGACACCATAAGTACCATGCTACTCAATTTGGAGAAGATCATAGAGGAGA
GAGATATTCTTCACATGCGTGATCGAGATTATATTGGACCTGGGAAACCT
AACGGCTCGACAATTGACGAGCTTCTCGACAAAGCCGTCAAACAGAAGAC
CACCGTAGATGCTGAATTTCACAAGCTAACATCAGCGGCTGCTGCGGCTG
CTAACGCCGCTGCGGCCGCTTCTCGCTGGCGTGCTCCGTTTGATGCTTCT
GAGTTCTGTGAGAACCCCAATTGTCTCGCCAATCTTGATCTTTCTCTTCT
TGCCCGTGTTTGCAAGTGTCACAAGGTATTCAGAGCGGATATACACCCTC
GGCGTATTGTTCAATTTGAGAAATCTATGTATGAATCCGCTTGCCTATCT
CCACAACTCTCGGAGATGCTTTATGCAACTTGTCGACTGGCCAATTCGAA
CACAAAAGCAATGTCATTTTTGTCCCGGTCAATCCGATCTATGTACAAAA
AGGTATGTGAGATTTGTAGGGAATCAGGGTTTGTTTCTGCAGATGTGCAA
GATGTATTGAAAGATATCGATAGAATCAATTCCGTCGCCCCGTTGAACCC
AAGTCCGCGGCAGAAAGAGCGTGTTGATTTTCTTGAGAAGGTCTGCAGTG
AGGAAAAGACTGTCCAGGACCCATTCACGATGTCAGGGTGTGGGCGTAAC
GTTTACAAGCAGGGTGTTCGAATGGTTGATGCAATCGAGTTGAATCATGG
ATTGGAGCAAAAATATGCTCATATAAACGCTGTCGTTAGCTTAAAGAGTG
TCGATGAACTTGGCTTGAGAGTTAAAGGGGATCCCAAAGAAGGAATTGGT
ATGAAGCTAGATCTCCCTGTTTGTGATGAGCCCACAACTATGAATCCTAA
AGCAGAATCCTTCGAGCTACCAGGAGATATCATGGGCGATCAAATTGAGG
TGTATTCTGTTACATATCAGGAATGGAGGATTGCAGTCGTATCCGGCAAA
CTATCCGATGGAAGACATGTGCTCAACTTCAACGATGGCGTTGTCGAGCA
CGTGATGCTCTATGAGAGGCTTTGGCGCCCAGTTGCCTGA
back to top

protein sequence of Ggra1759.t1

>Ggra1759.t1 ID=Ggra1759.t1|Name=Ggra1759.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=430bp
MSRPSSQAQAPSRQSSVPQPVPPRYHSQASAILRAIGDLKKAIDDFLNKI
ENALYVPYEAARARKDFDTISTMLLNLEKIIEERDILHMRDRDYIGPGKP
NGSTIDELLDKAVKQKTTVDAEFHKLTSAAAAAANAAAAASRWRAPFDAS
EFCENPNCLANLDLSLLARVCKCHKVFRADIHPRRIVQFEKSMYESACLS
PQLSEMLYATCRLANSNTKAMSFLSRSIRSMYKKVCEICRESGFVSADVQ
DVLKDIDRINSVAPLNPSPRQKERVDFLEKVCSEEKTVQDPFTMSGCGRN
VYKQGVRMVDAIELNHGLEQKYAHINAVVSLKSVDELGLRVKGDPKEGIG
MKLDLPVCDEPTTMNPKAESFELPGDIMGDQIEVYSVTYQEWRIAVVSGK
LSDGRHVLNFNDGVVEHVMLYERLWRPVA*
back to top

mRNA from alignment at tig00000050_pilon:559578..561104-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1759.t1 ID=Ggra1759.t1|Name=Ggra1759.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1527bp|location=Sequence derived from alignment at tig00000050_pilon:559578..561104- (Gracilaria gracilis GNS1m male)
ATGTCTCGCCCAAGCAGCCAAGCTCAAGCTCCATCACGCCAATCTTCTGT
TCCCCAACCAGTACCCCCACGCTATCATTCGCAAGCCTCCGCAATTCTCC
GCGCAATAGGTGACCTTAAAAAAGCCATTGACGACTTTCTAAACAAAATG
TAAGAGCATGGCGTCCACGAGTTTGACCTAACATTGATTCTTTTCCTTTC
ACTAACAGTTCATACATTCATATTCTTTATCAGTGAAAATGCGCTCTACG
TTCCTTACGAAGCCGCTCGGGCACGAAAGGATTTCGACACCATAAGTACC
ATGCTACTCAATTTGGAGAAGATCATAGAGGAGAGAGATATTCTTCACAT
GCGTGATCGAGATTATATTGGACCTGGGAAACCTAACGGCTCGACAATTG
ACGAGCTTCTCGACAAAGCCGTCAAACAGAAGACCACCGTAGATGCTGAA
TTTCACAAGCTAACATCAGCGGCTGCTGCGGCTGCTAACGCCGCTGCGGC
CGCTTCTCGCTGGCGTGCGTAACCGCTATGAAAAGTAAGGCGTTACGTTT
CATACAACTTCTTCAGTCCGTTTGATGCTTCTGAGTTCTGTGAGAACCCC
AATTGTCTCGCCAATCTTGATCTTTCTCTTCTTGCCCGTGTTTGCAAGTG
TCACAAGGTATTCAGAGCGGATATACACCCTCGGCGTATTGTTCAATTTG
GTTCGTGTGCTCTACAGTCGAAAGTTTCGAGATTCGAAGCAATCAACCAA
GAATATCATCGATTCAAGTGAAACATGTGTTCTACTTCTCCTGCAAAACA
AGCAGAGAAATCTATGTATGAATCCGCTTGCCTATCTCCACAACTCTCGG
AGATGCTTTATGCAACTTGTCGACTGGCCAATTCGAACACAAAAGCAATG
TCATTTTTGTCCCGGTCAATCCGATCTATGTACAAAAAGGTATGTGAGAT
TTGTAGGGAATCAGGGTTTGTTTCTGCAGATGTGCAAGATGTATTGAAAG
ATATCGATAGAATCAATTCCGTCGCCCCGTTGAACCCAAGTCCGCGGCAG
AAAGAGCGTGTTGATTTTCTTGAGAAGGTCTGCAGTGAGGAAAAGACTGT
CCAGGACCCATTCACGATGTCAGGGTGTGGGCGTAACGTTTACAAGCAGG
GTGTTCGAATGGTTGATGCAATCGAGTTGAATCATGGATTGGAGCAAAAA
TATGCTCATATAAACGCTGTCGTTAGCTTAAAGAGTGTCGATGAACTTGG
CTTGAGAGTTAAAGGGGATCCCAAAGAAGGAATTGGTATGAAGCTAGATC
TCCCTGTTTGTGATGAGCCCACAACTATGAATCCTAAAGCAGAATCCTTC
GAGCTACCAGGAGATATCATGGGCGATCAAATTGAGGTGTATTCTGTTAC
ATATCAGGAATGGAGGATTGCAGTCGTATCCGGCAAACTATCCGATGGAA
GACATGTGCTCAACTTCAACGATGGCGTTGTCGAGCACGTGATGCTCTAT
GAGAGGCTTTGGCGCCCAGTTGCCTGA
back to top

Coding sequence (CDS) from alignment at tig00000050_pilon:559578..561104-

>Ggra1759.t1 ID=Ggra1759.t1|Name=Ggra1759.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1290bp|location=Sequence derived from alignment at tig00000050_pilon:559578..561104- (Gracilaria gracilis GNS1m male)
ATGTCTCGCCCAAGCAGCCAAGCTCAAGCTCCATCACGCCAATCTTCTGT
TCCCCAACCAGTACCCCCACGCTATCATTCGCAAGCCTCCGCAATTCTCC
GCGCAATAGGTGACCTTAAAAAAGCCATTGACGACTTTCTAAACAAAATT
GAAAATGCGCTCTACGTTCCTTACGAAGCCGCTCGGGCACGAAAGGATTT
CGACACCATAAGTACCATGCTACTCAATTTGGAGAAGATCATAGAGGAGA
GAGATATTCTTCACATGCGTGATCGAGATTATATTGGACCTGGGAAACCT
AACGGCTCGACAATTGACGAGCTTCTCGACAAAGCCGTCAAACAGAAGAC
CACCGTAGATGCTGAATTTCACAAGCTAACATCAGCGGCTGCTGCGGCTG
CTAACGCCGCTGCGGCCGCTTCTCGCTGGCGTGCTCCGTTTGATGCTTCT
GAGTTCTGTGAGAACCCCAATTGTCTCGCCAATCTTGATCTTTCTCTTCT
TGCCCGTGTTTGCAAGTGTCACAAGGTATTCAGAGCGGATATACACCCTC
GGCGTATTGTTCAATTTGAGAAATCTATGTATGAATCCGCTTGCCTATCT
CCACAACTCTCGGAGATGCTTTATGCAACTTGTCGACTGGCCAATTCGAA
CACAAAAGCAATGTCATTTTTGTCCCGGTCAATCCGATCTATGTACAAAA
AGGTATGTGAGATTTGTAGGGAATCAGGGTTTGTTTCTGCAGATGTGCAA
GATGTATTGAAAGATATCGATAGAATCAATTCCGTCGCCCCGTTGAACCC
AAGTCCGCGGCAGAAAGAGCGTGTTGATTTTCTTGAGAAGGTCTGCAGTG
AGGAAAAGACTGTCCAGGACCCATTCACGATGTCAGGGTGTGGGCGTAAC
GTTTACAAGCAGGGTGTTCGAATGGTTGATGCAATCGAGTTGAATCATGG
ATTGGAGCAAAAATATGCTCATATAAACGCTGTCGTTAGCTTAAAGAGTG
TCGATGAACTTGGCTTGAGAGTTAAAGGGGATCCCAAAGAAGGAATTGGT
ATGAAGCTAGATCTCCCTGTTTGTGATGAGCCCACAACTATGAATCCTAA
AGCAGAATCCTTCGAGCTACCAGGAGATATCATGGGCGATCAAATTGAGG
TGTATTCTGTTACATATCAGGAATGGAGGATTGCAGTCGTATCCGGCAAA
CTATCCGATGGAAGACATGTGCTCAACTTCAACGATGGCGTTGTCGAGCA
CGTGATGCTCTATGAGAGGCTTTGGCGCCCAGTTGCCTGA
back to top