Ggra1755.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1755.t1
Unique NameGgra1755.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length75
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:551115..551525 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1755Ggra1755Gracilaria gracilis GNS1m malegenetig00000050_pilon 551115..551525 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1755.t1Ggra1755.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 551115..551525 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1755.t1.stop1Ggra1755.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 551115..551117 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1755.t1.CDS1Ggra1755.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 551115..551118 -
Ggra1755.t1.CDS2Ggra1755.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000050_pilon 551305..551525 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1755.t1.exon1Ggra1755.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 551115..551118 -
Ggra1755.t1.exon2Ggra1755.t1.exon2Gracilaria gracilis GNS1m maleexontig00000050_pilon 551305..551525 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1755.t1.intron1Ggra1755.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000050_pilon 551119..551304 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1755.t1.start1Ggra1755.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 551523..551525 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1755.t1 ID=Ggra1755.t1|Name=Ggra1755.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=75bp
MPHRSRAASVQSVCLLQSHPRGLFAFFVVVPPSSPPPLSMTWSRNLHPPP
PRRRTAAVHAHARSPARSPASPPQ*
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spliced messenger RNA

>Ggra1755.t1 ID=Ggra1755.t1|Name=Ggra1755.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=225bp|location=Sequence derived from alignment at tig00000050_pilon:551115..551525- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCACCGTTCGCGCGCCGCTTCTGTGCAGAGTGTGTGCCTGCTTCA
AAGCCACCCCCGTGGTCTGTTCGCCTTCTTCGTGGTCGTGCCGCCGTCGT
CGCCGCCACCGCTGAGCATGACCTGGTCGCGCAACCTTCACCCCCCCCCG
CCCCGCCGTCGTACCGCCGCCGTCCACGCGCACGCACGCTCGCCCGCACG
CTCGCCCGCCTCCCCGCCCCAATAA
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protein sequence of Ggra1755.t1

>Ggra1755.t1 ID=Ggra1755.t1|Name=Ggra1755.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=75bp
MPHRSRAASVQSVCLLQSHPRGLFAFFVVVPPSSPPPLSMTWSRNLHPPP
PRRRTAAVHAHARSPARSPASPPQ*
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mRNA from alignment at tig00000050_pilon:551115..551525-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1755.t1 ID=Ggra1755.t1|Name=Ggra1755.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=411bp|location=Sequence derived from alignment at tig00000050_pilon:551115..551525- (Gracilaria gracilis GNS1m male)
ATGCCGCACCGTTCGCGCGCCGCTTCTGTGCAGAGTGTGTGCCTGCTTCA
AAGCCACCCCCGTGGTCTGTTCGCCTTCTTCGTGGTCGTGCCGCCGTCGT
CGCCGCCACCGCTGAGCATGACCTGGTCGCGCAACCTTCACCCCCCCCCG
CCCCGCCGTCGTACCGCCGCCGTCCACGCGCACGCACGCTCGCCCGCACG
CTCGCCCGCCTCCCCGCCCCAGTACGTCGCCCCCGCCCTGCACGCCCGTC
CAGCTCGCCGCCTATGTCAGCTCTCCTAAAACCATGCCTCCTTCCCCTAC
ACGCCGACTTTTGTCATCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCGCGTCGCCCTCGTCCTCGTCCTCGTTCTGTCCTGCGTGTGTACCT
CGTACAGATAA
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Coding sequence (CDS) from alignment at tig00000050_pilon:551115..551525-

>Ggra1755.t1 ID=Ggra1755.t1|Name=Ggra1755.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=225bp|location=Sequence derived from alignment at tig00000050_pilon:551115..551525- (Gracilaria gracilis GNS1m male)
ATGCCGCACCGTTCGCGCGCCGCTTCTGTGCAGAGTGTGTGCCTGCTTCA
AAGCCACCCCCGTGGTCTGTTCGCCTTCTTCGTGGTCGTGCCGCCGTCGT
CGCCGCCACCGCTGAGCATGACCTGGTCGCGCAACCTTCACCCCCCCCCG
CCCCGCCGTCGTACCGCCGCCGTCCACGCGCACGCACGCTCGCCCGCACG
CTCGCCCGCCTCCCCGCCCCAATAA
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