Ggra1752.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1752.t1
Unique NameGgra1752.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length360
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:545790..546869 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1752Ggra1752Gracilaria gracilis GNS1m malegenetig00000050_pilon 545790..546869 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1752.t1.start1Ggra1752.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 545790..545792 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1752.t1.CDS1Ggra1752.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 545790..546869 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1752.t1.exon1Ggra1752.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 545790..546869 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1752.t1.stop1Ggra1752.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 546867..546869 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1752.t1Ggra1752.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 545790..546869 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1752.t1 ID=Ggra1752.t1|Name=Ggra1752.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=360bp
MEVLSVELNSPSPSSFDINLVSLIEPVDDMTTHDFSFQGFHSSSSSPNIL
STPCSEVPVFPPIENLEQDSNHFVSLLQQRTSPSQLNPVVPNSFGGQLNQ
LLETDIQVQLPSTNTEALENYVSNEVGNSPNDLAAIVYAALQESGKAECP
AVFTPIPRVLQPAPAAPPSLNLNAIITPRHMFASPFTQPLSVPFSATNSS
KRRYYGSASSSRYCHICGRGTSSAATAKCSNSRNGTCRKIICERCMLIHD
PLHANVRNRNEHTWVCTHCRMKCPACARCHQYARNNMKRRLRNQAGADKG
IKKRNHDSSKAGTSGTASMSVSNDDGIAMDVEKTSDTSVRENVSHGISYD
IVDSFFVAI*
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spliced messenger RNA

>Ggra1752.t1 ID=Ggra1752.t1|Name=Ggra1752.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1080bp|location=Sequence derived from alignment at tig00000050_pilon:545790..546869+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGTTTTGTCAGTTGAGCTAAACAGTCCATCGCCATCGTCATTTGA
CATAAACTTGGTTTCTCTCATAGAACCCGTGGATGACATGACAACACACG
ATTTCTCATTTCAAGGATTTCATTCGTCATCATCCTCGCCAAATATATTG
AGCACTCCGTGTTCTGAAGTGCCAGTATTCCCTCCAATTGAAAACCTTGA
ACAGGATTCGAATCACTTTGTATCTCTGTTGCAACAACGAACTTCACCGT
CGCAGCTAAACCCCGTAGTTCCGAATTCGTTTGGCGGTCAACTCAATCAA
TTGTTAGAAACAGACATTCAGGTTCAGTTACCGAGCACAAACACAGAAGC
GTTGGAGAATTATGTGTCGAACGAAGTCGGGAATTCTCCAAACGACCTTG
CAGCAATTGTCTATGCGGCACTCCAAGAAAGTGGAAAAGCAGAATGCCCG
GCAGTGTTTACTCCTATCCCCAGGGTGCTACAGCCTGCGCCTGCAGCACC
ACCGTCTCTAAATTTAAATGCAATCATCACACCTCGCCATATGTTCGCTT
CCCCATTTACCCAGCCATTGTCCGTTCCATTTTCAGCAACAAACAGTTCG
AAGAGACGGTATTACGGAAGCGCCAGTTCGTCAAGATACTGTCATATCTG
CGGTAGAGGTACTTCAAGTGCAGCGACTGCAAAGTGTTCCAACAGCAGAA
ATGGCACCTGTCGCAAAATCATTTGCGAGCGGTGTATGTTGATACATGAC
CCTTTGCATGCGAATGTACGTAATCGTAATGAACACACTTGGGTTTGCAC
TCATTGTCGAATGAAATGTCCTGCTTGTGCTCGATGTCACCAATATGCTA
GGAATAACATGAAGCGACGGCTCAGAAATCAAGCTGGGGCTGATAAAGGG
ATTAAGAAACGAAACCATGACAGTAGCAAGGCTGGCACATCCGGGACGGC
GTCCATGTCCGTGTCCAACGACGATGGAATTGCAATGGATGTGGAGAAAA
CGAGCGACACAAGTGTGCGCGAGAATGTATCACATGGCATTAGCTATGAT
ATAGTTGATAGTTTCTTCGTTGCTATCTAA
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protein sequence of Ggra1752.t1

>Ggra1752.t1 ID=Ggra1752.t1|Name=Ggra1752.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=360bp
MEVLSVELNSPSPSSFDINLVSLIEPVDDMTTHDFSFQGFHSSSSSPNIL
STPCSEVPVFPPIENLEQDSNHFVSLLQQRTSPSQLNPVVPNSFGGQLNQ
LLETDIQVQLPSTNTEALENYVSNEVGNSPNDLAAIVYAALQESGKAECP
AVFTPIPRVLQPAPAAPPSLNLNAIITPRHMFASPFTQPLSVPFSATNSS
KRRYYGSASSSRYCHICGRGTSSAATAKCSNSRNGTCRKIICERCMLIHD
PLHANVRNRNEHTWVCTHCRMKCPACARCHQYARNNMKRRLRNQAGADKG
IKKRNHDSSKAGTSGTASMSVSNDDGIAMDVEKTSDTSVRENVSHGISYD
IVDSFFVAI*
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mRNA from alignment at tig00000050_pilon:545790..546869+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1752.t1 ID=Ggra1752.t1|Name=Ggra1752.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1080bp|location=Sequence derived from alignment at tig00000050_pilon:545790..546869+ (Gracilaria gracilis GNS1m male)
ATGGAAGTTTTGTCAGTTGAGCTAAACAGTCCATCGCCATCGTCATTTGA
CATAAACTTGGTTTCTCTCATAGAACCCGTGGATGACATGACAACACACG
ATTTCTCATTTCAAGGATTTCATTCGTCATCATCCTCGCCAAATATATTG
AGCACTCCGTGTTCTGAAGTGCCAGTATTCCCTCCAATTGAAAACCTTGA
ACAGGATTCGAATCACTTTGTATCTCTGTTGCAACAACGAACTTCACCGT
CGCAGCTAAACCCCGTAGTTCCGAATTCGTTTGGCGGTCAACTCAATCAA
TTGTTAGAAACAGACATTCAGGTTCAGTTACCGAGCACAAACACAGAAGC
GTTGGAGAATTATGTGTCGAACGAAGTCGGGAATTCTCCAAACGACCTTG
CAGCAATTGTCTATGCGGCACTCCAAGAAAGTGGAAAAGCAGAATGCCCG
GCAGTGTTTACTCCTATCCCCAGGGTGCTACAGCCTGCGCCTGCAGCACC
ACCGTCTCTAAATTTAAATGCAATCATCACACCTCGCCATATGTTCGCTT
CCCCATTTACCCAGCCATTGTCCGTTCCATTTTCAGCAACAAACAGTTCG
AAGAGACGGTATTACGGAAGCGCCAGTTCGTCAAGATACTGTCATATCTG
CGGTAGAGGTACTTCAAGTGCAGCGACTGCAAAGTGTTCCAACAGCAGAA
ATGGCACCTGTCGCAAAATCATTTGCGAGCGGTGTATGTTGATACATGAC
CCTTTGCATGCGAATGTACGTAATCGTAATGAACACACTTGGGTTTGCAC
TCATTGTCGAATGAAATGTCCTGCTTGTGCTCGATGTCACCAATATGCTA
GGAATAACATGAAGCGACGGCTCAGAAATCAAGCTGGGGCTGATAAAGGG
ATTAAGAAACGAAACCATGACAGTAGCAAGGCTGGCACATCCGGGACGGC
GTCCATGTCCGTGTCCAACGACGATGGAATTGCAATGGATGTGGAGAAAA
CGAGCGACACAAGTGTGCGCGAGAATGTATCACATGGCATTAGCTATGAT
ATAGTTGATAGTTTCTTCGTTGCTATCTAA
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Coding sequence (CDS) from alignment at tig00000050_pilon:545790..546869+

>Ggra1752.t1 ID=Ggra1752.t1|Name=Ggra1752.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1080bp|location=Sequence derived from alignment at tig00000050_pilon:545790..546869+ (Gracilaria gracilis GNS1m male)
ATGGAAGTTTTGTCAGTTGAGCTAAACAGTCCATCGCCATCGTCATTTGA
CATAAACTTGGTTTCTCTCATAGAACCCGTGGATGACATGACAACACACG
ATTTCTCATTTCAAGGATTTCATTCGTCATCATCCTCGCCAAATATATTG
AGCACTCCGTGTTCTGAAGTGCCAGTATTCCCTCCAATTGAAAACCTTGA
ACAGGATTCGAATCACTTTGTATCTCTGTTGCAACAACGAACTTCACCGT
CGCAGCTAAACCCCGTAGTTCCGAATTCGTTTGGCGGTCAACTCAATCAA
TTGTTAGAAACAGACATTCAGGTTCAGTTACCGAGCACAAACACAGAAGC
GTTGGAGAATTATGTGTCGAACGAAGTCGGGAATTCTCCAAACGACCTTG
CAGCAATTGTCTATGCGGCACTCCAAGAAAGTGGAAAAGCAGAATGCCCG
GCAGTGTTTACTCCTATCCCCAGGGTGCTACAGCCTGCGCCTGCAGCACC
ACCGTCTCTAAATTTAAATGCAATCATCACACCTCGCCATATGTTCGCTT
CCCCATTTACCCAGCCATTGTCCGTTCCATTTTCAGCAACAAACAGTTCG
AAGAGACGGTATTACGGAAGCGCCAGTTCGTCAAGATACTGTCATATCTG
CGGTAGAGGTACTTCAAGTGCAGCGACTGCAAAGTGTTCCAACAGCAGAA
ATGGCACCTGTCGCAAAATCATTTGCGAGCGGTGTATGTTGATACATGAC
CCTTTGCATGCGAATGTACGTAATCGTAATGAACACACTTGGGTTTGCAC
TCATTGTCGAATGAAATGTCCTGCTTGTGCTCGATGTCACCAATATGCTA
GGAATAACATGAAGCGACGGCTCAGAAATCAAGCTGGGGCTGATAAAGGG
ATTAAGAAACGAAACCATGACAGTAGCAAGGCTGGCACATCCGGGACGGC
GTCCATGTCCGTGTCCAACGACGATGGAATTGCAATGGATGTGGAGAAAA
CGAGCGACACAAGTGTGCGCGAGAATGTATCACATGGCATTAGCTATGAT
ATAGTTGATAGTTTCTTCGTTGCTATCTAA
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