Ggra1749.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1749.t1
Unique NameGgra1749.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length303
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:536670..537578 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703016.1
Preferred nameTSEN34
PFAMstRNA_int_endo
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00041
KEGG koko:K00181,ko:K15323
KEGG ReactionR11201
KEGG Pathwayko04310,map04310
GOsGO:0000213,GO:0000214,GO:0000379,GO:0000394,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0004549,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0006139,GO:0006388,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016787,GO:0016788,GO:0016892,GO:0016894,GO:0019867,GO:0031090,GO:0031966,GO:0031967,GO:0031968,GO:0031974,GO:0031975,GO:0031981,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0098588,GO:0098805,GO:0140098,GO:0140101,GO:1901360,GO:1902494,GO:1902555,GO:1905348
Evalue1.62e-22
EggNOG OGsCOG1676@1|root,KOG4133@2759|Eukaryota
EC2.3.1.250,3.1.27.9
DescriptiontRNA-intron endonuclease activity
COG categoryJ
BRITEko00000,ko00001,ko01000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1749Ggra1749Gracilaria gracilis GNS1m malegenetig00000050_pilon 536670..537578 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1749.t1.stop1Ggra1749.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 536670..536672 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1749.t1.CDS1Ggra1749.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 536670..537578 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1749.t1.exon1Ggra1749.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 536670..537578 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1749.t1.start1Ggra1749.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 537576..537578 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1749.t1Ggra1749.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 536670..537578 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1749.t1 ID=Ggra1749.t1|Name=Ggra1749.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=303bp
MYVRSRLRLLGDFCGTLPKHIAQNQYLSLPLVLSYEETVFGVMKEYFTVV
GDDDSDYTPKDDAPEMFWKRREEDIQRQVEESVAQQVTERERRKEELPAT
RRGRKRPREQVHDNEEVGPLRKMARTVWKWVGERLGWTAPLATPHEEPAR
DEEMEARAEDKEEDVRRRLAHQARATALVMTSTSARVDEGARRVRRKVRR
PAGGKDKRLRERLSVLEDLHERGYFVSCGAKFGADFLAYAGSPQVFHAAL
AVVVIGAEQRVDARSIVAMGRLGDATKKRAVMAFVSGGVVKYVGVQWEET
LP*
back to top

spliced messenger RNA

>Ggra1749.t1 ID=Ggra1749.t1|Name=Ggra1749.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=909bp|location=Sequence derived from alignment at tig00000050_pilon:536670..537578- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACGTTCGGAGCCGACTGCGTCTGCTAGGCGATTTTTGTGGAACTCT
GCCAAAACACATCGCGCAAAACCAATACCTATCTCTGCCACTAGTACTGT
CATATGAAGAGACGGTGTTCGGGGTAATGAAGGAGTACTTCACGGTGGTT
GGTGACGACGATTCCGACTACACGCCAAAAGACGATGCGCCAGAGATGTT
CTGGAAGCGGCGCGAGGAGGACATACAACGACAGGTGGAAGAGAGCGTCG
CACAACAAGTGACGGAACGCGAACGACGCAAAGAGGAGCTGCCAGCGACG
CGGAGGGGACGCAAACGACCGCGCGAACAAGTACACGACAATGAAGAGGT
CGGACCTTTACGCAAAATGGCGCGTACGGTGTGGAAATGGGTTGGCGAAC
GACTGGGATGGACAGCACCATTGGCAACACCGCACGAGGAGCCAGCGCGT
GACGAAGAGATGGAAGCGCGCGCGGAAGATAAGGAGGAAGACGTGAGGCG
ACGCTTGGCACACCAGGCGCGCGCGACGGCGCTGGTGATGACGAGCACGT
CTGCGCGTGTGGACGAGGGAGCGAGAAGGGTGCGGCGCAAGGTACGACGA
CCGGCAGGTGGGAAGGACAAGCGACTGAGAGAACGACTATCGGTGCTGGA
AGATCTTCACGAACGCGGCTATTTCGTGTCGTGCGGCGCCAAGTTCGGGG
CGGATTTCCTGGCGTACGCAGGGTCGCCGCAGGTGTTCCATGCTGCGCTG
GCAGTGGTGGTGATCGGGGCGGAGCAACGCGTGGATGCGAGGAGTATTGT
GGCGATGGGACGGTTGGGTGACGCGACGAAGAAACGCGCGGTGATGGCGT
TTGTCAGTGGTGGCGTGGTGAAATACGTCGGTGTGCAGTGGGAGGAGACT
TTGCCGTGA
back to top

protein sequence of Ggra1749.t1

>Ggra1749.t1 ID=Ggra1749.t1|Name=Ggra1749.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=303bp
MYVRSRLRLLGDFCGTLPKHIAQNQYLSLPLVLSYEETVFGVMKEYFTVV
GDDDSDYTPKDDAPEMFWKRREEDIQRQVEESVAQQVTERERRKEELPAT
RRGRKRPREQVHDNEEVGPLRKMARTVWKWVGERLGWTAPLATPHEEPAR
DEEMEARAEDKEEDVRRRLAHQARATALVMTSTSARVDEGARRVRRKVRR
PAGGKDKRLRERLSVLEDLHERGYFVSCGAKFGADFLAYAGSPQVFHAAL
AVVVIGAEQRVDARSIVAMGRLGDATKKRAVMAFVSGGVVKYVGVQWEET
LP*
back to top

mRNA from alignment at tig00000050_pilon:536670..537578-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1749.t1 ID=Ggra1749.t1|Name=Ggra1749.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=909bp|location=Sequence derived from alignment at tig00000050_pilon:536670..537578- (Gracilaria gracilis GNS1m male)
ATGTACGTTCGGAGCCGACTGCGTCTGCTAGGCGATTTTTGTGGAACTCT
GCCAAAACACATCGCGCAAAACCAATACCTATCTCTGCCACTAGTACTGT
CATATGAAGAGACGGTGTTCGGGGTAATGAAGGAGTACTTCACGGTGGTT
GGTGACGACGATTCCGACTACACGCCAAAAGACGATGCGCCAGAGATGTT
CTGGAAGCGGCGCGAGGAGGACATACAACGACAGGTGGAAGAGAGCGTCG
CACAACAAGTGACGGAACGCGAACGACGCAAAGAGGAGCTGCCAGCGACG
CGGAGGGGACGCAAACGACCGCGCGAACAAGTACACGACAATGAAGAGGT
CGGACCTTTACGCAAAATGGCGCGTACGGTGTGGAAATGGGTTGGCGAAC
GACTGGGATGGACAGCACCATTGGCAACACCGCACGAGGAGCCAGCGCGT
GACGAAGAGATGGAAGCGCGCGCGGAAGATAAGGAGGAAGACGTGAGGCG
ACGCTTGGCACACCAGGCGCGCGCGACGGCGCTGGTGATGACGAGCACGT
CTGCGCGTGTGGACGAGGGAGCGAGAAGGGTGCGGCGCAAGGTACGACGA
CCGGCAGGTGGGAAGGACAAGCGACTGAGAGAACGACTATCGGTGCTGGA
AGATCTTCACGAACGCGGCTATTTCGTGTCGTGCGGCGCCAAGTTCGGGG
CGGATTTCCTGGCGTACGCAGGGTCGCCGCAGGTGTTCCATGCTGCGCTG
GCAGTGGTGGTGATCGGGGCGGAGCAACGCGTGGATGCGAGGAGTATTGT
GGCGATGGGACGGTTGGGTGACGCGACGAAGAAACGCGCGGTGATGGCGT
TTGTCAGTGGTGGCGTGGTGAAATACGTCGGTGTGCAGTGGGAGGAGACT
TTGCCGTGA
back to top

Coding sequence (CDS) from alignment at tig00000050_pilon:536670..537578-

>Ggra1749.t1 ID=Ggra1749.t1|Name=Ggra1749.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=909bp|location=Sequence derived from alignment at tig00000050_pilon:536670..537578- (Gracilaria gracilis GNS1m male)
ATGTACGTTCGGAGCCGACTGCGTCTGCTAGGCGATTTTTGTGGAACTCT
GCCAAAACACATCGCGCAAAACCAATACCTATCTCTGCCACTAGTACTGT
CATATGAAGAGACGGTGTTCGGGGTAATGAAGGAGTACTTCACGGTGGTT
GGTGACGACGATTCCGACTACACGCCAAAAGACGATGCGCCAGAGATGTT
CTGGAAGCGGCGCGAGGAGGACATACAACGACAGGTGGAAGAGAGCGTCG
CACAACAAGTGACGGAACGCGAACGACGCAAAGAGGAGCTGCCAGCGACG
CGGAGGGGACGCAAACGACCGCGCGAACAAGTACACGACAATGAAGAGGT
CGGACCTTTACGCAAAATGGCGCGTACGGTGTGGAAATGGGTTGGCGAAC
GACTGGGATGGACAGCACCATTGGCAACACCGCACGAGGAGCCAGCGCGT
GACGAAGAGATGGAAGCGCGCGCGGAAGATAAGGAGGAAGACGTGAGGCG
ACGCTTGGCACACCAGGCGCGCGCGACGGCGCTGGTGATGACGAGCACGT
CTGCGCGTGTGGACGAGGGAGCGAGAAGGGTGCGGCGCAAGGTACGACGA
CCGGCAGGTGGGAAGGACAAGCGACTGAGAGAACGACTATCGGTGCTGGA
AGATCTTCACGAACGCGGCTATTTCGTGTCGTGCGGCGCCAAGTTCGGGG
CGGATTTCCTGGCGTACGCAGGGTCGCCGCAGGTGTTCCATGCTGCGCTG
GCAGTGGTGGTGATCGGGGCGGAGCAACGCGTGGATGCGAGGAGTATTGT
GGCGATGGGACGGTTGGGTGACGCGACGAAGAAACGCGCGGTGATGGCGT
TTGTCAGTGGTGGCGTGGTGAAATACGTCGGTGTGCAGTGGGAGGAGACT
TTGCCGTGA
back to top