Ggra1743.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1743.t1
Unique NameGgra1743.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length364
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:527573..528664 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1743Ggra1743Gracilaria gracilis GNS1m malegenetig00000050_pilon 527573..528664 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1743.t1.start1Ggra1743.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 527573..527575 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1743.t1.CDS1Ggra1743.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 527573..528664 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1743.t1.exon1Ggra1743.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 527573..528664 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1743.t1.stop1Ggra1743.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 528662..528664 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1743.t1Ggra1743.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 527573..528664 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1743.t1 ID=Ggra1743.t1|Name=Ggra1743.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=364bp
MAGIKHATKKKFNRSTTRKKTIQSGISSEFSTLRSQLTAISTSVRSLVKT
IGTARDSWLSVAKEEKVFAETLSAAFHDESDVKSHAKEVETAVHQMQQKL
LANEGPEAPHNKVIAVLQGYLKQIEDIEKDCADVETSYTEVLRYQKKVDK
MQKKPGKRQKQLQRNLEKLSVARGEHQTKLDDMIKRMKTAQEKHQVVFQC
AHHAFWIAQDRYFTTVNQITQSVRWESVSVQERLMNVDFHATEKLEPIPR
AVALLPPVTASEVTPPQILPPTPSKDKEAVKLPIEKQEGSKPEENKIPET
PLKIPETPPKIPETPLKIPETPPKIPETPLKIPETPPKIPETPLSTPQKA
VESEPVTPEVKAL*
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spliced messenger RNA

>Ggra1743.t1 ID=Ggra1743.t1|Name=Ggra1743.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1092bp|location=Sequence derived from alignment at tig00000050_pilon:527573..528664+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGGTATTAAGCATGCGACAAAGAAGAAGTTCAACAGGTCTACGAC
CAGGAAGAAGACCATTCAGTCTGGCATTAGTTCTGAGTTCTCGACCCTTC
GTAGTCAGCTGACGGCAATATCAACCTCTGTCAGGTCCCTAGTCAAAACC
ATTGGCACCGCTCGCGACTCATGGCTGTCAGTCGCCAAGGAGGAAAAGGT
ATTTGCTGAAACTCTTTCTGCTGCGTTTCATGATGAAAGTGACGTCAAGT
CTCACGCCAAGGAGGTGGAAACTGCCGTACATCAGATGCAGCAGAAGCTA
CTCGCCAATGAAGGACCGGAAGCCCCGCATAACAAAGTAATTGCCGTTCT
CCAGGGATATCTTAAACAGATCGAAGACATCGAGAAGGACTGCGCTGATG
TGGAGACAAGCTATACTGAGGTCTTACGCTATCAGAAGAAGGTCGATAAG
ATGCAGAAGAAGCCTGGAAAGCGCCAGAAGCAGTTGCAACGCAATCTCGA
GAAGCTTAGCGTTGCAAGAGGTGAGCACCAGACAAAATTGGACGATATGA
TTAAGAGGATGAAGACTGCCCAGGAAAAGCATCAGGTAGTGTTCCAGTGC
GCTCATCACGCCTTCTGGATCGCTCAGGATCGGTACTTCACCACCGTGAA
TCAGATTACTCAGTCTGTGCGTTGGGAGAGTGTATCCGTACAAGAGCGCC
TCATGAATGTGGACTTTCATGCGACAGAGAAACTGGAGCCCATTCCCCGT
GCAGTCGCGCTGCTGCCACCGGTGACCGCCAGCGAAGTTACACCACCCCA
AATTCTGCCCCCAACGCCTTCCAAGGATAAGGAGGCTGTCAAGTTACCTA
TTGAGAAGCAGGAGGGCAGTAAGCCTGAGGAAAATAAGATTCCCGAGACA
CCGCTGAAGATTCCCGAGACCCCGCCGAAGATTCCCGAGACACCGCTGAA
GATTCCCGAGACCCCGCCGAAGATTCCCGAGACACCGCTGAAGATTCCCG
AGACCCCGCCGAAGATTCCCGAGACACCGCTGTCTACTCCTCAAAAGGCA
GTAGAATCAGAGCCAGTTACTCCTGAAGTGAAGGCTTTGTAA
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protein sequence of Ggra1743.t1

>Ggra1743.t1 ID=Ggra1743.t1|Name=Ggra1743.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=364bp
MAGIKHATKKKFNRSTTRKKTIQSGISSEFSTLRSQLTAISTSVRSLVKT
IGTARDSWLSVAKEEKVFAETLSAAFHDESDVKSHAKEVETAVHQMQQKL
LANEGPEAPHNKVIAVLQGYLKQIEDIEKDCADVETSYTEVLRYQKKVDK
MQKKPGKRQKQLQRNLEKLSVARGEHQTKLDDMIKRMKTAQEKHQVVFQC
AHHAFWIAQDRYFTTVNQITQSVRWESVSVQERLMNVDFHATEKLEPIPR
AVALLPPVTASEVTPPQILPPTPSKDKEAVKLPIEKQEGSKPEENKIPET
PLKIPETPPKIPETPLKIPETPPKIPETPLKIPETPPKIPETPLSTPQKA
VESEPVTPEVKAL*
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mRNA from alignment at tig00000050_pilon:527573..528664+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1743.t1 ID=Ggra1743.t1|Name=Ggra1743.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1092bp|location=Sequence derived from alignment at tig00000050_pilon:527573..528664+ (Gracilaria gracilis GNS1m male)
ATGGCAGGTATTAAGCATGCGACAAAGAAGAAGTTCAACAGGTCTACGAC
CAGGAAGAAGACCATTCAGTCTGGCATTAGTTCTGAGTTCTCGACCCTTC
GTAGTCAGCTGACGGCAATATCAACCTCTGTCAGGTCCCTAGTCAAAACC
ATTGGCACCGCTCGCGACTCATGGCTGTCAGTCGCCAAGGAGGAAAAGGT
ATTTGCTGAAACTCTTTCTGCTGCGTTTCATGATGAAAGTGACGTCAAGT
CTCACGCCAAGGAGGTGGAAACTGCCGTACATCAGATGCAGCAGAAGCTA
CTCGCCAATGAAGGACCGGAAGCCCCGCATAACAAAGTAATTGCCGTTCT
CCAGGGATATCTTAAACAGATCGAAGACATCGAGAAGGACTGCGCTGATG
TGGAGACAAGCTATACTGAGGTCTTACGCTATCAGAAGAAGGTCGATAAG
ATGCAGAAGAAGCCTGGAAAGCGCCAGAAGCAGTTGCAACGCAATCTCGA
GAAGCTTAGCGTTGCAAGAGGTGAGCACCAGACAAAATTGGACGATATGA
TTAAGAGGATGAAGACTGCCCAGGAAAAGCATCAGGTAGTGTTCCAGTGC
GCTCATCACGCCTTCTGGATCGCTCAGGATCGGTACTTCACCACCGTGAA
TCAGATTACTCAGTCTGTGCGTTGGGAGAGTGTATCCGTACAAGAGCGCC
TCATGAATGTGGACTTTCATGCGACAGAGAAACTGGAGCCCATTCCCCGT
GCAGTCGCGCTGCTGCCACCGGTGACCGCCAGCGAAGTTACACCACCCCA
AATTCTGCCCCCAACGCCTTCCAAGGATAAGGAGGCTGTCAAGTTACCTA
TTGAGAAGCAGGAGGGCAGTAAGCCTGAGGAAAATAAGATTCCCGAGACA
CCGCTGAAGATTCCCGAGACCCCGCCGAAGATTCCCGAGACACCGCTGAA
GATTCCCGAGACCCCGCCGAAGATTCCCGAGACACCGCTGAAGATTCCCG
AGACCCCGCCGAAGATTCCCGAGACACCGCTGTCTACTCCTCAAAAGGCA
GTAGAATCAGAGCCAGTTACTCCTGAAGTGAAGGCTTTGTAA
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Coding sequence (CDS) from alignment at tig00000050_pilon:527573..528664+

>Ggra1743.t1 ID=Ggra1743.t1|Name=Ggra1743.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1092bp|location=Sequence derived from alignment at tig00000050_pilon:527573..528664+ (Gracilaria gracilis GNS1m male)
ATGGCAGGTATTAAGCATGCGACAAAGAAGAAGTTCAACAGGTCTACGAC
CAGGAAGAAGACCATTCAGTCTGGCATTAGTTCTGAGTTCTCGACCCTTC
GTAGTCAGCTGACGGCAATATCAACCTCTGTCAGGTCCCTAGTCAAAACC
ATTGGCACCGCTCGCGACTCATGGCTGTCAGTCGCCAAGGAGGAAAAGGT
ATTTGCTGAAACTCTTTCTGCTGCGTTTCATGATGAAAGTGACGTCAAGT
CTCACGCCAAGGAGGTGGAAACTGCCGTACATCAGATGCAGCAGAAGCTA
CTCGCCAATGAAGGACCGGAAGCCCCGCATAACAAAGTAATTGCCGTTCT
CCAGGGATATCTTAAACAGATCGAAGACATCGAGAAGGACTGCGCTGATG
TGGAGACAAGCTATACTGAGGTCTTACGCTATCAGAAGAAGGTCGATAAG
ATGCAGAAGAAGCCTGGAAAGCGCCAGAAGCAGTTGCAACGCAATCTCGA
GAAGCTTAGCGTTGCAAGAGGTGAGCACCAGACAAAATTGGACGATATGA
TTAAGAGGATGAAGACTGCCCAGGAAAAGCATCAGGTAGTGTTCCAGTGC
GCTCATCACGCCTTCTGGATCGCTCAGGATCGGTACTTCACCACCGTGAA
TCAGATTACTCAGTCTGTGCGTTGGGAGAGTGTATCCGTACAAGAGCGCC
TCATGAATGTGGACTTTCATGCGACAGAGAAACTGGAGCCCATTCCCCGT
GCAGTCGCGCTGCTGCCACCGGTGACCGCCAGCGAAGTTACACCACCCCA
AATTCTGCCCCCAACGCCTTCCAAGGATAAGGAGGCTGTCAAGTTACCTA
TTGAGAAGCAGGAGGGCAGTAAGCCTGAGGAAAATAAGATTCCCGAGACA
CCGCTGAAGATTCCCGAGACCCCGCCGAAGATTCCCGAGACACCGCTGAA
GATTCCCGAGACCCCGCCGAAGATTCCCGAGACACCGCTGAAGATTCCCG
AGACCCCGCCGAAGATTCCCGAGACACCGCTGTCTACTCCTCAAAAGGCA
GTAGAATCAGAGCCAGTTACTCCTGAAGTGAAGGCTTTGTAA
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