Ggra174.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra174.t1
Unique NameGgra174.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length306
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000158_piloncontigtig00000158_pilon:32625..33795 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra174Ggra174Gracilaria gracilis GNS1m malegenetig00000158_pilon 32625..33795 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra174.t1Ggra174.t1Gracilaria gracilis GNS1m malepolypeptidetig00000158_pilon 32625..33795 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra174.t1.stop1Ggra174.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000158_pilon 32625..32627 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra174.t1.CDS1Ggra174.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000158_pilon 32625..32975 -
Ggra174.t1.CDS2Ggra174.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000158_pilon 33053..33259 -
Ggra174.t1.CDS3Ggra174.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000158_pilon 33357..33520 -
Ggra174.t1.CDS4Ggra174.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000158_pilon 33600..33795 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra174.t1.exon1Ggra174.t1.exon1Gracilaria gracilis GNS1m maleexontig00000158_pilon 32625..32975 -
Ggra174.t1.exon2Ggra174.t1.exon2Gracilaria gracilis GNS1m maleexontig00000158_pilon 33053..33259 -
Ggra174.t1.exon3Ggra174.t1.exon3Gracilaria gracilis GNS1m maleexontig00000158_pilon 33357..33520 -
Ggra174.t1.exon4Ggra174.t1.exon4Gracilaria gracilis GNS1m maleexontig00000158_pilon 33600..33795 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra174.t1.intron1Ggra174.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000158_pilon 32976..33052 -
Ggra174.t1.intron2Ggra174.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000158_pilon 33260..33356 -
Ggra174.t1.intron3Ggra174.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000158_pilon 33521..33599 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra174.t1.start1Ggra174.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000158_pilon 33793..33795 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra174.t1 ID=Ggra174.t1|Name=Ggra174.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=306bp
MKPAIFSKPLTFTLLALLVFYSLWCRSIATVTPNIHVLRRTQNQTSEQDD
HHPSKRWGTTDVFIVDGYEDGDVPESDLRICGNSKNGTQPCSTTVCLEGH
SLFWRNIVGTGHCRCICCNGQTATCTETATSVALSTGCQCAGEESGGTTD
SNMIIEEEGNGNNSLIVADCVKPLGSSSMDSRKAFFARDHSSCRLRTYGQ
VCAERGDCTTRFAAVSRLKNSFDWSIVRIDGRRGSSMTLTSMSVHAGHGR
VSLSRAIAHAADWLNRRGIGAVSDAVVICLLSLEALCSSFAQLLRYSAHL
VNCSW*
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spliced messenger RNA

>Ggra174.t1 ID=Ggra174.t1|Name=Ggra174.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=918bp|location=Sequence derived from alignment at tig00000158_pilon:32625..33795- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCCTGCAATCTTTTCGAAACCGCTTACCTTCACGCTTCTCGCGCT
CTTGGTCTTCTACTCACTGTGGTGCCGTTCCATCGCCACGGTCACGCCAA
ACATACATGTGCTACGGCGAACCCAAAATCAAACAAGCGAACAAGATGAC
CACCATCCTTCGAAACGATGGGGAACCACCGACGTGTTCATAGTTGACGG
CTACGAGGATGGAGACGTTCCGGAATCAGACCTTCGCATTTGCGGCAATT
CGAAGAACGGAACTCAACCATGTAGCACCACCGTTTGTCTCGAAGGTCAC
AGCCTGTTCTGGCGAAACATTGTCGGCACTGGTCATTGCAGATGTATATG
TTGCAACGGCCAAACCGCTACTTGCACCGAAACGGCGACATCGGTGGCTC
TCAGTACGGGGTGCCAGTGCGCCGGAGAGGAATCTGGCGGCACCACAGAC
TCTAATATGATCATCGAAGAAGAAGGAAACGGGAACAACAGCCTGATAGT
GGCTGACTGCGTGAAACCGCTTGGATCAAGCAGCATGGATTCGCGCAAGG
CATTCTTCGCGAGAGATCACTCTTCATGTCGCCTTCGCACGTACGGGCAA
GTGTGCGCGGAGAGAGGAGATTGTACTACACGGTTCGCCGCAGTGTCGCG
TTTGAAAAACTCGTTTGACTGGAGCATTGTGCGTATCGACGGACGCAGAG
GGAGTTCTATGACGCTGACGAGTATGAGTGTGCATGCAGGACATGGCAGA
GTGTCTTTGTCGAGGGCGATTGCGCATGCTGCGGATTGGCTCAACCGTCG
CGGAATTGGGGCTGTGTCGGATGCTGTGGTGATTTGCTTGCTATCGTTAG
AAGCTCTGTGCTCATCGTTTGCTCAGCTGTTGCGATATAGTGCCCATCTG
GTCAACTGCTCCTGGTAG
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protein sequence of Ggra174.t1

>Ggra174.t1 ID=Ggra174.t1|Name=Ggra174.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=306bp
MKPAIFSKPLTFTLLALLVFYSLWCRSIATVTPNIHVLRRTQNQTSEQDD
HHPSKRWGTTDVFIVDGYEDGDVPESDLRICGNSKNGTQPCSTTVCLEGH
SLFWRNIVGTGHCRCICCNGQTATCTETATSVALSTGCQCAGEESGGTTD
SNMIIEEEGNGNNSLIVADCVKPLGSSSMDSRKAFFARDHSSCRLRTYGQ
VCAERGDCTTRFAAVSRLKNSFDWSIVRIDGRRGSSMTLTSMSVHAGHGR
VSLSRAIAHAADWLNRRGIGAVSDAVVICLLSLEALCSSFAQLLRYSAHL
VNCSW*
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mRNA from alignment at tig00000158_pilon:32625..33795-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra174.t1 ID=Ggra174.t1|Name=Ggra174.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1171bp|location=Sequence derived from alignment at tig00000158_pilon:32625..33795- (Gracilaria gracilis GNS1m male)
ATGAAGCCTGCAATCTTTTCGAAACCGCTTACCTTCACGCTTCTCGCGCT
CTTGGTCTTCTACTCACTGTGGTGCCGTTCCATCGCCACGGTCACGCCAA
ACATACATGTGCTACGGCGAACCCAAAATCAAACAAGCGAACAAGATGAC
CACCATCCTTCGAAACGATGGGGAACCACCGACGTGTTCATAGTTGGTAC
GCTTGATACCTCTTCTCTTTTCGCGACGCAAGCATTGCTTCGAACTTCTC
ACACATTTCTGTTGACTGCTGTCAGACGGCTACGAGGATGGAGACGTTCC
GGAATCAGACCTTCGCATTTGCGGCAATTCGAAGAACGGAACTCAACCAT
GTAGCACCACCGTTTGTCTCGAAGGTCACAGCCTGTTCTGGCGAAACATT
GTCGGCACTGGTCATTGCAGATGTATATGTTGCAACGGCGTAAGTTGTTC
ATTGATATTTAACGCGCAGATATTGAGCGAGTTGTTTGTGCCTACTGACG
TGATATATATGTGTGACAACGTTATACCTTGTTTAGCAAACCGCTACTTG
CACCGAAACGGCGACATCGGTGGCTCTCAGTACGGGGTGCCAGTGCGCCG
GAGAGGAATCTGGCGGCACCACAGACTCTAATATGATCATCGAAGAAGAA
GGAAACGGGAACAACAGCCTGATAGTGGCTGACTGCGTGAAACCGCTTGG
ATCAAGCAGCATGGATTCGCGCAAGGCATTCTTCGCGAGAGATGTACGTC
AGAAGTGCTTTGCCTCGCAGGTCTGCCGTGTGCCACTGCCGGCCATCTGC
TGCGTGAATGTGACGCGCAGCACTCTTCATGTCGCCTTCGCACGTACGGG
CAAGTGTGCGCGGAGAGAGGAGATTGTACTACACGGTTCGCCGCAGTGTC
GCGTTTGAAAAACTCGTTTGACTGGAGCATTGTGCGTATCGACGGACGCA
GAGGGAGTTCTATGACGCTGACGAGTATGAGTGTGCATGCAGGACATGGC
AGAGTGTCTTTGTCGAGGGCGATTGCGCATGCTGCGGATTGGCTCAACCG
TCGCGGAATTGGGGCTGTGTCGGATGCTGTGGTGATTTGCTTGCTATCGT
TAGAAGCTCTGTGCTCATCGTTTGCTCAGCTGTTGCGATATAGTGCCCAT
CTGGTCAACTGCTCCTGGTAG
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Coding sequence (CDS) from alignment at tig00000158_pilon:32625..33795-

>Ggra174.t1 ID=Ggra174.t1|Name=Ggra174.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=918bp|location=Sequence derived from alignment at tig00000158_pilon:32625..33795- (Gracilaria gracilis GNS1m male)
ATGAAGCCTGCAATCTTTTCGAAACCGCTTACCTTCACGCTTCTCGCGCT
CTTGGTCTTCTACTCACTGTGGTGCCGTTCCATCGCCACGGTCACGCCAA
ACATACATGTGCTACGGCGAACCCAAAATCAAACAAGCGAACAAGATGAC
CACCATCCTTCGAAACGATGGGGAACCACCGACGTGTTCATAGTTGACGG
CTACGAGGATGGAGACGTTCCGGAATCAGACCTTCGCATTTGCGGCAATT
CGAAGAACGGAACTCAACCATGTAGCACCACCGTTTGTCTCGAAGGTCAC
AGCCTGTTCTGGCGAAACATTGTCGGCACTGGTCATTGCAGATGTATATG
TTGCAACGGCCAAACCGCTACTTGCACCGAAACGGCGACATCGGTGGCTC
TCAGTACGGGGTGCCAGTGCGCCGGAGAGGAATCTGGCGGCACCACAGAC
TCTAATATGATCATCGAAGAAGAAGGAAACGGGAACAACAGCCTGATAGT
GGCTGACTGCGTGAAACCGCTTGGATCAAGCAGCATGGATTCGCGCAAGG
CATTCTTCGCGAGAGATCACTCTTCATGTCGCCTTCGCACGTACGGGCAA
GTGTGCGCGGAGAGAGGAGATTGTACTACACGGTTCGCCGCAGTGTCGCG
TTTGAAAAACTCGTTTGACTGGAGCATTGTGCGTATCGACGGACGCAGAG
GGAGTTCTATGACGCTGACGAGTATGAGTGTGCATGCAGGACATGGCAGA
GTGTCTTTGTCGAGGGCGATTGCGCATGCTGCGGATTGGCTCAACCGTCG
CGGAATTGGGGCTGTGTCGGATGCTGTGGTGATTTGCTTGCTATCGTTAG
AAGCTCTGTGCTCATCGTTTGCTCAGCTGTTGCGATATAGTGCCCATCTG
GTCAACTGCTCCTGGTAG
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