Ggra1738.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1738.t1
Unique Name	Ggra1738.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	720

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000050_pilon	contig	tig00000050_pilon:510286..512445 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704314.1
PFAMs	AAA_11,AAA_12
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K14326
KEGG Pathway	ko03013,ko03015,map03013,map03015
KEGG Module	M00430
Evalue	2.87e-93
EggNOG OGs	COG1112@1\|root,KOG1802@2759\|Eukaryota
Description	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
COG category	L
BRITE	ko00000,ko00001,ko00002,ko01000,ko03019

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1738	Ggra1738	Gracilaria gracilis GNS1m male	gene	tig00000050_pilon 510286..512445 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1738.t1.stop1	Ggra1738.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000050_pilon 510286..510288 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1738.t1.CDS1	Ggra1738.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000050_pilon 510286..512445 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1738.t1.exon1	Ggra1738.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000050_pilon 510286..512445 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1738.t1.start1	Ggra1738.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000050_pilon 512443..512445 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1738.t1	Ggra1738.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000050_pilon 510286..512445 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000050_pilon:510286..512445-
coding sequence from alignment at tig00000050_pilon:510286..512445-

mRNA sequence

>Ggra1738.t1 ID=Ggra1738.t1|Name=Ggra1738.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=720bp
MIDPAFCFPRPSFVHDHVNRSCSRKTWTCRRPNSKGKQRSKPGRGRSSKR
EALRNAMEFYSNHFEPLLGKELEAEQQQQRLLRSENAPGLKLHNLGVNRI
RRLFSDIVYSLESRATLPHARFGKGDLIDIYYKTEAVQAVILSRQSKKLL
ISVPVSSEAENRMSTFVAAKIRVSAESGVNTLAYERALAAIDLFANGETP
LNSSFARLIILSFIDEEAQVPMSTLNSFMSTSSPRKRKGASTESSFWANL
AGEKVGSFKEERANQLVNKLKPSLNLSQIRAIRAGLRQKLTLIQGPPGTG
KTLTTAHLISCAHQLGHGPILACAGTNIATDNLMRKVVTACPKARVIRLG
RVSAMEQDIWDRSLDSLLERNRRVRRARQEAERGVEVNLRTVEKEVAYEI
LKHADVVVATCVGCGRDEIKGFEFPLIIIDEATQVTEPDSLIPFSCSGNF
ESQCVLVGDHFQLPPTVLSTEPNSKAAGLEVSLFLRLWACGVHVQLLDTQ
YRMHPEISRFPSSHFYSGMLRNGVRAMDRPVPSILSQKANLLFAQGRSVF
CNIDNGTEESASSSLRLEKQHIGTSFLNKAEAQAVVTIVSLITQGKETQE
ESRSKRVGRFDIGIISPYEGQVRLLHDLLVDNDNSEMKISTVDGFQGQEK
DVIVVSTVRSNQNGKTGFLKDWRRLNVSITRARFLLIVVGDENTLCYDPH
WRAWIKSHPKIDILELIDH*

spliced messenger RNA

>Ggra1738.t1 ID=Ggra1738.t1|Name=Ggra1738.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2160bp|location=Sequence derived from alignment at tig00000050_pilon:510286..512445- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATAGACCCCGCTTTTTGCTTCCCTAGGCCCAGCTTTGTTCATGACCA
TGTTAACCGAAGCTGTTCTCGAAAGACATGGACCTGTCGAAGACCAAATT
CGAAAGGCAAACAACGTTCTAAGCCAGGTAGAGGGCGCTCGTCCAAGCGT
GAAGCACTTAGAAATGCAATGGAGTTTTACAGCAATCATTTCGAACCTTT
GCTGGGCAAAGAATTGGAAGCAGAACAGCAACAGCAACGCTTGTTACGTT
CAGAAAATGCACCAGGATTGAAGCTTCATAATCTTGGCGTGAATCGAATC
AGGAGGCTGTTCTCTGATATTGTCTACTCATTAGAATCCCGAGCCACTCT
CCCGCATGCGCGGTTTGGAAAGGGCGACTTGATTGATATATATTACAAGA
CCGAAGCCGTCCAGGCAGTAATACTATCCCGTCAGTCGAAGAAGTTACTT
ATTTCGGTCCCCGTCAGTTCAGAGGCTGAGAATCGAATGAGTACATTTGT
CGCTGCAAAAATTCGCGTCAGTGCTGAATCCGGCGTGAACACCTTAGCCT
ACGAACGAGCTCTCGCTGCGATAGACTTGTTTGCAAATGGAGAAACCCCT
TTGAATTCGAGTTTCGCCCGCCTCATTATTTTATCATTCATTGACGAAGA
AGCACAGGTACCGATGAGCACGCTAAACTCCTTTATGAGTACCAGTTCTC
CACGAAAACGAAAGGGCGCGTCTACTGAATCGAGTTTCTGGGCAAACCTA
GCTGGTGAAAAAGTTGGTTCTTTTAAAGAAGAACGCGCAAACCAGTTGGT
GAACAAACTGAAGCCCTCCCTGAACCTGAGCCAAATAAGAGCCATAAGGG
CGGGTTTACGTCAGAAGTTGACACTGATTCAAGGTCCACCAGGAACTGGT
AAGACTCTAACTACCGCCCATCTGATCTCATGCGCTCATCAACTGGGCCA
TGGTCCAATACTTGCGTGTGCCGGAACCAATATTGCTACTGATAATCTAA
TGCGAAAAGTAGTCACAGCTTGCCCAAAGGCGAGAGTAATCCGACTCGGT
AGAGTATCAGCAATGGAACAAGATATTTGGGATAGATCACTGGACAGCCT
TCTTGAACGGAACAGAAGGGTCCGCCGAGCACGACAGGAAGCCGAGCGTG
GTGTTGAGGTAAATCTAAGAACCGTCGAAAAAGAAGTTGCTTATGAGATT
TTGAAACATGCAGATGTAGTTGTTGCCACATGTGTTGGATGTGGTAGAGA
TGAGATTAAGGGGTTTGAGTTCCCATTGATTATCATCGATGAGGCCACTC
AGGTGACCGAACCGGATTCCCTTATTCCATTTTCTTGTTCAGGAAACTTT
GAATCACAGTGTGTGCTTGTTGGGGATCATTTTCAATTGCCTCCAACTGT
ATTGTCAACAGAACCCAACTCCAAAGCTGCAGGACTAGAAGTGAGCCTGT
TCCTGAGACTATGGGCATGTGGAGTACATGTCCAGTTGCTAGATACACAG
TATCGAATGCACCCAGAAATATCACGTTTCCCGTCGTCGCATTTCTATTC
AGGTATGTTGCGTAACGGTGTGAGAGCGATGGATCGCCCAGTTCCATCCA
TTCTAAGCCAAAAAGCGAATTTGCTCTTTGCCCAAGGTCGTTCAGTGTTT
TGTAATATCGATAATGGCACTGAAGAAAGCGCATCTAGCTCGCTACGACT
TGAAAAACAACACATCGGGACGTCATTCTTGAACAAGGCTGAAGCTCAAG
CAGTGGTCACAATTGTCTCGCTCATAACACAAGGAAAGGAGACGCAGGAA
GAAAGCCGCTCAAAGCGGGTGGGAAGGTTTGATATTGGAATCATATCACC
ATATGAAGGCCAAGTTCGACTTTTGCATGATCTTCTAGTGGACAACGATA
ATTCGGAAATGAAAATAAGCACAGTTGATGGTTTCCAAGGACAAGAAAAA
GATGTGATCGTTGTCTCGACAGTCCGAAGCAACCAGAATGGCAAAACTGG
GTTTTTGAAAGATTGGCGGCGATTGAACGTCAGTATAACAAGAGCACGTT
TCCTTCTCATCGTAGTGGGTGACGAGAATACCCTTTGCTATGACCCACAC
TGGCGAGCTTGGATAAAGTCGCACCCCAAAATCGATATTCTAGAACTCAT
AGACCACTGA

protein sequence of Ggra1738.t1

>Ggra1738.t1 ID=Ggra1738.t1|Name=Ggra1738.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=720bp
MIDPAFCFPRPSFVHDHVNRSCSRKTWTCRRPNSKGKQRSKPGRGRSSKR
EALRNAMEFYSNHFEPLLGKELEAEQQQQRLLRSENAPGLKLHNLGVNRI
RRLFSDIVYSLESRATLPHARFGKGDLIDIYYKTEAVQAVILSRQSKKLL
ISVPVSSEAENRMSTFVAAKIRVSAESGVNTLAYERALAAIDLFANGETP
LNSSFARLIILSFIDEEAQVPMSTLNSFMSTSSPRKRKGASTESSFWANL
AGEKVGSFKEERANQLVNKLKPSLNLSQIRAIRAGLRQKLTLIQGPPGTG
KTLTTAHLISCAHQLGHGPILACAGTNIATDNLMRKVVTACPKARVIRLG
RVSAMEQDIWDRSLDSLLERNRRVRRARQEAERGVEVNLRTVEKEVAYEI
LKHADVVVATCVGCGRDEIKGFEFPLIIIDEATQVTEPDSLIPFSCSGNF
ESQCVLVGDHFQLPPTVLSTEPNSKAAGLEVSLFLRLWACGVHVQLLDTQ
YRMHPEISRFPSSHFYSGMLRNGVRAMDRPVPSILSQKANLLFAQGRSVF
CNIDNGTEESASSSLRLEKQHIGTSFLNKAEAQAVVTIVSLITQGKETQE
ESRSKRVGRFDIGIISPYEGQVRLLHDLLVDNDNSEMKISTVDGFQGQEK
DVIVVSTVRSNQNGKTGFLKDWRRLNVSITRARFLLIVVGDENTLCYDPH
WRAWIKSHPKIDILELIDH*

mRNA from alignment at tig00000050_pilon:510286..512445-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1738.t1 ID=Ggra1738.t1|Name=Ggra1738.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2160bp|location=Sequence derived from alignment at tig00000050_pilon:510286..512445- (Gracilaria gracilis GNS1m male)
ATGATAGACCCCGCTTTTTGCTTCCCTAGGCCCAGCTTTGTTCATGACCA
TGTTAACCGAAGCTGTTCTCGAAAGACATGGACCTGTCGAAGACCAAATT
CGAAAGGCAAACAACGTTCTAAGCCAGGTAGAGGGCGCTCGTCCAAGCGT
GAAGCACTTAGAAATGCAATGGAGTTTTACAGCAATCATTTCGAACCTTT
GCTGGGCAAAGAATTGGAAGCAGAACAGCAACAGCAACGCTTGTTACGTT
CAGAAAATGCACCAGGATTGAAGCTTCATAATCTTGGCGTGAATCGAATC
AGGAGGCTGTTCTCTGATATTGTCTACTCATTAGAATCCCGAGCCACTCT
CCCGCATGCGCGGTTTGGAAAGGGCGACTTGATTGATATATATTACAAGA
CCGAAGCCGTCCAGGCAGTAATACTATCCCGTCAGTCGAAGAAGTTACTT
ATTTCGGTCCCCGTCAGTTCAGAGGCTGAGAATCGAATGAGTACATTTGT
CGCTGCAAAAATTCGCGTCAGTGCTGAATCCGGCGTGAACACCTTAGCCT
ACGAACGAGCTCTCGCTGCGATAGACTTGTTTGCAAATGGAGAAACCCCT
TTGAATTCGAGTTTCGCCCGCCTCATTATTTTATCATTCATTGACGAAGA
AGCACAGGTACCGATGAGCACGCTAAACTCCTTTATGAGTACCAGTTCTC
CACGAAAACGAAAGGGCGCGTCTACTGAATCGAGTTTCTGGGCAAACCTA
GCTGGTGAAAAAGTTGGTTCTTTTAAAGAAGAACGCGCAAACCAGTTGGT
GAACAAACTGAAGCCCTCCCTGAACCTGAGCCAAATAAGAGCCATAAGGG
CGGGTTTACGTCAGAAGTTGACACTGATTCAAGGTCCACCAGGAACTGGT
AAGACTCTAACTACCGCCCATCTGATCTCATGCGCTCATCAACTGGGCCA
TGGTCCAATACTTGCGTGTGCCGGAACCAATATTGCTACTGATAATCTAA
TGCGAAAAGTAGTCACAGCTTGCCCAAAGGCGAGAGTAATCCGACTCGGT
AGAGTATCAGCAATGGAACAAGATATTTGGGATAGATCACTGGACAGCCT
TCTTGAACGGAACAGAAGGGTCCGCCGAGCACGACAGGAAGCCGAGCGTG
GTGTTGAGGTAAATCTAAGAACCGTCGAAAAAGAAGTTGCTTATGAGATT
TTGAAACATGCAGATGTAGTTGTTGCCACATGTGTTGGATGTGGTAGAGA
TGAGATTAAGGGGTTTGAGTTCCCATTGATTATCATCGATGAGGCCACTC
AGGTGACCGAACCGGATTCCCTTATTCCATTTTCTTGTTCAGGAAACTTT
GAATCACAGTGTGTGCTTGTTGGGGATCATTTTCAATTGCCTCCAACTGT
ATTGTCAACAGAACCCAACTCCAAAGCTGCAGGACTAGAAGTGAGCCTGT
TCCTGAGACTATGGGCATGTGGAGTACATGTCCAGTTGCTAGATACACAG
TATCGAATGCACCCAGAAATATCACGTTTCCCGTCGTCGCATTTCTATTC
AGGTATGTTGCGTAACGGTGTGAGAGCGATGGATCGCCCAGTTCCATCCA
TTCTAAGCCAAAAAGCGAATTTGCTCTTTGCCCAAGGTCGTTCAGTGTTT
TGTAATATCGATAATGGCACTGAAGAAAGCGCATCTAGCTCGCTACGACT
TGAAAAACAACACATCGGGACGTCATTCTTGAACAAGGCTGAAGCTCAAG
CAGTGGTCACAATTGTCTCGCTCATAACACAAGGAAAGGAGACGCAGGAA
GAAAGCCGCTCAAAGCGGGTGGGAAGGTTTGATATTGGAATCATATCACC
ATATGAAGGCCAAGTTCGACTTTTGCATGATCTTCTAGTGGACAACGATA
ATTCGGAAATGAAAATAAGCACAGTTGATGGTTTCCAAGGACAAGAAAAA
GATGTGATCGTTGTCTCGACAGTCCGAAGCAACCAGAATGGCAAAACTGG
GTTTTTGAAAGATTGGCGGCGATTGAACGTCAGTATAACAAGAGCACGTT
TCCTTCTCATCGTAGTGGGTGACGAGAATACCCTTTGCTATGACCCACAC
TGGCGAGCTTGGATAAAGTCGCACCCCAAAATCGATATTCTAGAACTCAT
AGACCACTGA

Coding sequence (CDS) from alignment at tig00000050_pilon:510286..512445-

>Ggra1738.t1 ID=Ggra1738.t1|Name=Ggra1738.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2160bp|location=Sequence derived from alignment at tig00000050_pilon:510286..512445- (Gracilaria gracilis GNS1m male)
ATGATAGACCCCGCTTTTTGCTTCCCTAGGCCCAGCTTTGTTCATGACCA
TGTTAACCGAAGCTGTTCTCGAAAGACATGGACCTGTCGAAGACCAAATT
CGAAAGGCAAACAACGTTCTAAGCCAGGTAGAGGGCGCTCGTCCAAGCGT
GAAGCACTTAGAAATGCAATGGAGTTTTACAGCAATCATTTCGAACCTTT
GCTGGGCAAAGAATTGGAAGCAGAACAGCAACAGCAACGCTTGTTACGTT
CAGAAAATGCACCAGGATTGAAGCTTCATAATCTTGGCGTGAATCGAATC
AGGAGGCTGTTCTCTGATATTGTCTACTCATTAGAATCCCGAGCCACTCT
CCCGCATGCGCGGTTTGGAAAGGGCGACTTGATTGATATATATTACAAGA
CCGAAGCCGTCCAGGCAGTAATACTATCCCGTCAGTCGAAGAAGTTACTT
ATTTCGGTCCCCGTCAGTTCAGAGGCTGAGAATCGAATGAGTACATTTGT
CGCTGCAAAAATTCGCGTCAGTGCTGAATCCGGCGTGAACACCTTAGCCT
ACGAACGAGCTCTCGCTGCGATAGACTTGTTTGCAAATGGAGAAACCCCT
TTGAATTCGAGTTTCGCCCGCCTCATTATTTTATCATTCATTGACGAAGA
AGCACAGGTACCGATGAGCACGCTAAACTCCTTTATGAGTACCAGTTCTC
CACGAAAACGAAAGGGCGCGTCTACTGAATCGAGTTTCTGGGCAAACCTA
GCTGGTGAAAAAGTTGGTTCTTTTAAAGAAGAACGCGCAAACCAGTTGGT
GAACAAACTGAAGCCCTCCCTGAACCTGAGCCAAATAAGAGCCATAAGGG
CGGGTTTACGTCAGAAGTTGACACTGATTCAAGGTCCACCAGGAACTGGT
AAGACTCTAACTACCGCCCATCTGATCTCATGCGCTCATCAACTGGGCCA
TGGTCCAATACTTGCGTGTGCCGGAACCAATATTGCTACTGATAATCTAA
TGCGAAAAGTAGTCACAGCTTGCCCAAAGGCGAGAGTAATCCGACTCGGT
AGAGTATCAGCAATGGAACAAGATATTTGGGATAGATCACTGGACAGCCT
TCTTGAACGGAACAGAAGGGTCCGCCGAGCACGACAGGAAGCCGAGCGTG
GTGTTGAGGTAAATCTAAGAACCGTCGAAAAAGAAGTTGCTTATGAGATT
TTGAAACATGCAGATGTAGTTGTTGCCACATGTGTTGGATGTGGTAGAGA
TGAGATTAAGGGGTTTGAGTTCCCATTGATTATCATCGATGAGGCCACTC
AGGTGACCGAACCGGATTCCCTTATTCCATTTTCTTGTTCAGGAAACTTT
GAATCACAGTGTGTGCTTGTTGGGGATCATTTTCAATTGCCTCCAACTGT
ATTGTCAACAGAACCCAACTCCAAAGCTGCAGGACTAGAAGTGAGCCTGT
TCCTGAGACTATGGGCATGTGGAGTACATGTCCAGTTGCTAGATACACAG
TATCGAATGCACCCAGAAATATCACGTTTCCCGTCGTCGCATTTCTATTC
AGGTATGTTGCGTAACGGTGTGAGAGCGATGGATCGCCCAGTTCCATCCA
TTCTAAGCCAAAAAGCGAATTTGCTCTTTGCCCAAGGTCGTTCAGTGTTT
TGTAATATCGATAATGGCACTGAAGAAAGCGCATCTAGCTCGCTACGACT
TGAAAAACAACACATCGGGACGTCATTCTTGAACAAGGCTGAAGCTCAAG
CAGTGGTCACAATTGTCTCGCTCATAACACAAGGAAAGGAGACGCAGGAA
GAAAGCCGCTCAAAGCGGGTGGGAAGGTTTGATATTGGAATCATATCACC
ATATGAAGGCCAAGTTCGACTTTTGCATGATCTTCTAGTGGACAACGATA
ATTCGGAAATGAAAATAAGCACAGTTGATGGTTTCCAAGGACAAGAAAAA
GATGTGATCGTTGTCTCGACAGTCCGAAGCAACCAGAATGGCAAAACTGG
GTTTTTGAAAGATTGGCGGCGATTGAACGTCAGTATAACAAGAGCACGTT
TCCTTCTCATCGTAGTGGGTGACGAGAATACCCTTTGCTATGACCCACAC
TGGCGAGCTTGGATAAAGTCGCACCCCAAAATCGATATTCTAGAACTCAT
AGACCACTGA