Ggra1737.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1737.t1
Unique NameGgra1737.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length380
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:508764..509903 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5762.XP_002681081.1
Max annot lvl2759|Eukaryota
Evalue2.74e-13
EggNOG OGs2E2MC@1|root,2S9UJ@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1737Ggra1737Gracilaria gracilis GNS1m malegenetig00000050_pilon 508764..509903 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1737.t1.start1Ggra1737.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 508764..508766 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1737.t1.CDS1Ggra1737.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 508764..509903 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1737.t1.exon1Ggra1737.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 508764..509903 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1737.t1.stop1Ggra1737.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 509901..509903 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1737.t1Ggra1737.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 508764..509903 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1737.t1 ID=Ggra1737.t1|Name=Ggra1737.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=380bp
MAVNSPKPRYSFSAIKPRKVARALSSFRRLHFSHAGWLLSCILLCYILFG
PSRRISDEDSSLGLLQDDDLIRMRMEAAQNMSHSHSTDAPYKLGNKFCIL
QPTLSSGKTHWTTDDARNHIALRAFLRTFAATVTEGERKNFRFSIYYGHD
SDDPVLGSPKLRAAFKAEARRILEEKSFEEDVVQLIFTPLYGLHGRINAI
WNVLAKDAYYDGCDYFFLSNDDMVFFTKSWVSSSRDSLNGIGSPVGHKRP
CRYFGIVRFKDEWASWATFTFHVSTRMHMEIFGGVYYPVPYNSAHNDYWI
NYVYRHFDASKYRSEVRVRNRVEDVEYALAHPKDTTKVAPPRYEYDKRGD
ARKHIVEGRLRVQEWLDRYRKTSFCQKPL*
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spliced messenger RNA

>Ggra1737.t1 ID=Ggra1737.t1|Name=Ggra1737.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1140bp|location=Sequence derived from alignment at tig00000050_pilon:508764..509903+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGTCAATTCACCAAAGCCGCGATACTCGTTTTCTGCAATCAAACC
GCGCAAAGTGGCTCGGGCATTGTCCTCTTTTCGTCGACTACACTTTTCCC
ACGCAGGCTGGTTACTTTCATGTATATTACTTTGTTACATTCTTTTTGGC
CCAAGTCGCCGCATTTCGGATGAAGACAGTTCTCTTGGTTTGCTTCAAGA
CGATGATCTTATACGAATGAGGATGGAAGCCGCTCAGAATATGTCTCACT
CCCATTCTACAGACGCTCCATATAAACTTGGCAATAAGTTCTGTATTCTT
CAACCAACCCTTTCTTCAGGTAAGACGCACTGGACCACCGATGACGCTCG
CAATCATATTGCGTTGCGTGCTTTTCTTCGAACATTTGCTGCCACCGTCA
CAGAAGGAGAACGCAAGAATTTTCGGTTTTCTATATATTACGGTCATGAT
TCAGATGATCCTGTGCTCGGATCCCCTAAGCTCCGTGCTGCATTCAAAGC
GGAGGCGCGACGTATCTTGGAGGAGAAGAGTTTCGAAGAAGATGTCGTTC
AACTCATATTCACCCCACTGTATGGTCTTCATGGTCGCATTAACGCCATA
TGGAACGTTCTAGCAAAGGATGCCTATTACGATGGCTGCGATTACTTCTT
TTTATCCAATGATGATATGGTTTTCTTTACCAAGTCATGGGTATCAAGCT
CTCGCGATTCTTTGAATGGAATTGGTTCTCCGGTTGGCCATAAACGACCA
TGCAGATACTTCGGGATCGTTCGCTTCAAGGACGAATGGGCCAGCTGGGC
CACATTCACTTTTCACGTCTCAACTCGCATGCATATGGAGATCTTCGGCG
GTGTGTATTACCCCGTTCCGTATAATTCAGCCCATAATGACTATTGGATC
AACTACGTCTATCGCCACTTTGATGCCAGCAAGTACCGATCAGAAGTGCG
AGTTCGCAACCGCGTCGAGGACGTTGAATATGCTCTAGCTCATCCAAAAG
ATACAACCAAGGTGGCCCCACCTCGTTATGAGTATGATAAGAGGGGTGAT
GCACGGAAACACATTGTGGAGGGCAGACTACGCGTACAAGAGTGGTTGGA
TCGATATCGAAAAACATCATTTTGTCAAAAGCCTCTTTAA
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protein sequence of Ggra1737.t1

>Ggra1737.t1 ID=Ggra1737.t1|Name=Ggra1737.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=380bp
MAVNSPKPRYSFSAIKPRKVARALSSFRRLHFSHAGWLLSCILLCYILFG
PSRRISDEDSSLGLLQDDDLIRMRMEAAQNMSHSHSTDAPYKLGNKFCIL
QPTLSSGKTHWTTDDARNHIALRAFLRTFAATVTEGERKNFRFSIYYGHD
SDDPVLGSPKLRAAFKAEARRILEEKSFEEDVVQLIFTPLYGLHGRINAI
WNVLAKDAYYDGCDYFFLSNDDMVFFTKSWVSSSRDSLNGIGSPVGHKRP
CRYFGIVRFKDEWASWATFTFHVSTRMHMEIFGGVYYPVPYNSAHNDYWI
NYVYRHFDASKYRSEVRVRNRVEDVEYALAHPKDTTKVAPPRYEYDKRGD
ARKHIVEGRLRVQEWLDRYRKTSFCQKPL*
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mRNA from alignment at tig00000050_pilon:508764..509903+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1737.t1 ID=Ggra1737.t1|Name=Ggra1737.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1140bp|location=Sequence derived from alignment at tig00000050_pilon:508764..509903+ (Gracilaria gracilis GNS1m male)
ATGGCAGTCAATTCACCAAAGCCGCGATACTCGTTTTCTGCAATCAAACC
GCGCAAAGTGGCTCGGGCATTGTCCTCTTTTCGTCGACTACACTTTTCCC
ACGCAGGCTGGTTACTTTCATGTATATTACTTTGTTACATTCTTTTTGGC
CCAAGTCGCCGCATTTCGGATGAAGACAGTTCTCTTGGTTTGCTTCAAGA
CGATGATCTTATACGAATGAGGATGGAAGCCGCTCAGAATATGTCTCACT
CCCATTCTACAGACGCTCCATATAAACTTGGCAATAAGTTCTGTATTCTT
CAACCAACCCTTTCTTCAGGTAAGACGCACTGGACCACCGATGACGCTCG
CAATCATATTGCGTTGCGTGCTTTTCTTCGAACATTTGCTGCCACCGTCA
CAGAAGGAGAACGCAAGAATTTTCGGTTTTCTATATATTACGGTCATGAT
TCAGATGATCCTGTGCTCGGATCCCCTAAGCTCCGTGCTGCATTCAAAGC
GGAGGCGCGACGTATCTTGGAGGAGAAGAGTTTCGAAGAAGATGTCGTTC
AACTCATATTCACCCCACTGTATGGTCTTCATGGTCGCATTAACGCCATA
TGGAACGTTCTAGCAAAGGATGCCTATTACGATGGCTGCGATTACTTCTT
TTTATCCAATGATGATATGGTTTTCTTTACCAAGTCATGGGTATCAAGCT
CTCGCGATTCTTTGAATGGAATTGGTTCTCCGGTTGGCCATAAACGACCA
TGCAGATACTTCGGGATCGTTCGCTTCAAGGACGAATGGGCCAGCTGGGC
CACATTCACTTTTCACGTCTCAACTCGCATGCATATGGAGATCTTCGGCG
GTGTGTATTACCCCGTTCCGTATAATTCAGCCCATAATGACTATTGGATC
AACTACGTCTATCGCCACTTTGATGCCAGCAAGTACCGATCAGAAGTGCG
AGTTCGCAACCGCGTCGAGGACGTTGAATATGCTCTAGCTCATCCAAAAG
ATACAACCAAGGTGGCCCCACCTCGTTATGAGTATGATAAGAGGGGTGAT
GCACGGAAACACATTGTGGAGGGCAGACTACGCGTACAAGAGTGGTTGGA
TCGATATCGAAAAACATCATTTTGTCAAAAGCCTCTTTAA
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Coding sequence (CDS) from alignment at tig00000050_pilon:508764..509903+

>Ggra1737.t1 ID=Ggra1737.t1|Name=Ggra1737.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1140bp|location=Sequence derived from alignment at tig00000050_pilon:508764..509903+ (Gracilaria gracilis GNS1m male)
ATGGCAGTCAATTCACCAAAGCCGCGATACTCGTTTTCTGCAATCAAACC
GCGCAAAGTGGCTCGGGCATTGTCCTCTTTTCGTCGACTACACTTTTCCC
ACGCAGGCTGGTTACTTTCATGTATATTACTTTGTTACATTCTTTTTGGC
CCAAGTCGCCGCATTTCGGATGAAGACAGTTCTCTTGGTTTGCTTCAAGA
CGATGATCTTATACGAATGAGGATGGAAGCCGCTCAGAATATGTCTCACT
CCCATTCTACAGACGCTCCATATAAACTTGGCAATAAGTTCTGTATTCTT
CAACCAACCCTTTCTTCAGGTAAGACGCACTGGACCACCGATGACGCTCG
CAATCATATTGCGTTGCGTGCTTTTCTTCGAACATTTGCTGCCACCGTCA
CAGAAGGAGAACGCAAGAATTTTCGGTTTTCTATATATTACGGTCATGAT
TCAGATGATCCTGTGCTCGGATCCCCTAAGCTCCGTGCTGCATTCAAAGC
GGAGGCGCGACGTATCTTGGAGGAGAAGAGTTTCGAAGAAGATGTCGTTC
AACTCATATTCACCCCACTGTATGGTCTTCATGGTCGCATTAACGCCATA
TGGAACGTTCTAGCAAAGGATGCCTATTACGATGGCTGCGATTACTTCTT
TTTATCCAATGATGATATGGTTTTCTTTACCAAGTCATGGGTATCAAGCT
CTCGCGATTCTTTGAATGGAATTGGTTCTCCGGTTGGCCATAAACGACCA
TGCAGATACTTCGGGATCGTTCGCTTCAAGGACGAATGGGCCAGCTGGGC
CACATTCACTTTTCACGTCTCAACTCGCATGCATATGGAGATCTTCGGCG
GTGTGTATTACCCCGTTCCGTATAATTCAGCCCATAATGACTATTGGATC
AACTACGTCTATCGCCACTTTGATGCCAGCAAGTACCGATCAGAAGTGCG
AGTTCGCAACCGCGTCGAGGACGTTGAATATGCTCTAGCTCATCCAAAAG
ATACAACCAAGGTGGCCCCACCTCGTTATGAGTATGATAAGAGGGGTGAT
GCACGGAAACACATTGTGGAGGGCAGACTACGCGTACAAGAGTGGTTGGA
TCGATATCGAAAAACATCATTTTGTCAAAAGCCTCTTTAA
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