Ggra1735.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1735.t1
Unique NameGgra1735.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length583
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:500331..502079 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog653948.CCA26673
PFAMsPkinase,cNMP_binding
Max annot lvl2759|Eukaryota
KEGG koko:K08794,ko:K17530
KEGG Pathwayko04921,ko04925,map04921,map04925
Evalue4.29e-37
EggNOG OGsKOG0032@1|root,KOG0032@2759|Eukaryota
EC2.7.11.1,2.7.11.17
Descriptionprotein serine/threonine kinase activity
COG categoryT
BRITEko00000,ko00001,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1735Ggra1735Gracilaria gracilis GNS1m malegenetig00000050_pilon 500331..502079 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1735.t1.stop1Ggra1735.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 500331..500333 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1735.t1.CDS1Ggra1735.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 500331..502079 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1735.t1.exon1Ggra1735.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 500331..502079 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1735.t1.start1Ggra1735.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 502077..502079 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1735.t1Ggra1735.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 500331..502079 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1735.t1 ID=Ggra1735.t1|Name=Ggra1735.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=583bp
MSSPSLLAAHHTPRAPHVRSRPRVHRLSDETPEDRQRFPDYSLMRRDRRP
QPMLNIPPPRTAAHIPHLFPDDVLPVPETTTPDLHANYPPNGGYVRATHS
AHVPLTRAPERQHSPLRPWMTPAIVSAGYVVVRVVSEGSFGTVLKAKRSA
DAAWVAIKVVKKVQLTEKDTNALRTQALVLRTIRHNYIVRFIDDFEDDYC
FYHVFEYLSGGDLYDRLESRGKPYTEAQVLFLAKQIFYAIAYLHALRAAH
RDIKLENFVFETTPQDQRQVMKLIDFDLLVVRNSHSPAAETCSDVCGTIL
YVSPEIASAKEHVPEQSDVWACGVMLYVLLSYSMPFQGDTNREILRAVRT
QHPNFSSGVWTSISPATKQLINDLLHKSASQRPTAAEALERVKYLSSQMG
EIDSSSRLRLLTKGLRSVSLNLWDPSGNLVRHRRSSDLRKSERFENARRA
HSSFPAPDDASSMSSMQTSLVMRSHVDSELTSENMDLVLSQQYTPQETTY
IKASRRRRAQTPRYDPYSNTEFRTSPALGNVLVQKQVAMDQSDKMEMHAL
QVNPEETVLRHRRSLKGRLGSRIRNWITMGNR*
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spliced messenger RNA

>Ggra1735.t1 ID=Ggra1735.t1|Name=Ggra1735.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1749bp|location=Sequence derived from alignment at tig00000050_pilon:500331..502079- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTCCCCGTCGCTACTCGCAGCACATCATACCCCGCGTGCGCCGCA
CGTGCGCTCGCGCCCCCGCGTTCACCGCCTCTCCGATGAGACGCCTGAGG
ACCGTCAGCGCTTTCCCGACTACTCGCTCATGCGTCGCGATCGACGCCCA
CAGCCCATGCTTAATATCCCGCCCCCACGCACCGCCGCCCACATCCCGCA
CCTCTTTCCCGACGACGTGCTGCCAGTTCCCGAGACCACTACCCCCGATC
TTCACGCCAATTACCCGCCAAACGGCGGCTATGTGCGCGCCACCCACTCG
GCCCATGTCCCGCTCACGCGCGCGCCTGAGCGCCAGCACTCCCCGCTGCG
CCCGTGGATGACGCCTGCCATTGTGTCCGCCGGCTACGTCGTCGTGCGCG
TCGTCAGCGAGGGCAGCTTTGGCACTGTGCTCAAGGCTAAGCGCAGCGCT
GACGCCGCCTGGGTCGCCATCAAGGTTGTCAAAAAGGTCCAGCTCACCGA
GAAGGACACCAACGCCCTCCGAACCCAGGCGCTCGTTCTGCGCACCATTC
GACATAACTACATTGTTCGCTTTATCGACGATTTTGAAGATGACTACTGC
TTTTACCACGTCTTTGAGTACCTCAGCGGCGGCGACTTGTACGACCGTCT
TGAATCGCGAGGCAAGCCCTACACAGAAGCGCAGGTTCTGTTCCTCGCCA
AGCAAATCTTTTATGCTATCGCTTATTTGCATGCTCTGCGCGCCGCGCAC
CGTGATATCAAGCTGGAGAACTTTGTGTTTGAAACCACCCCGCAAGACCA
ACGGCAGGTTATGAAGCTCATAGACTTTGACCTGCTTGTCGTGCGAAACA
GCCATTCACCAGCCGCCGAAACCTGTTCTGATGTCTGCGGTACCATCCTG
TATGTCTCGCCTGAAATCGCCAGTGCCAAGGAACATGTCCCAGAACAGTC
CGACGTGTGGGCTTGCGGTGTCATGCTGTACGTGTTGCTTTCGTATAGTA
TGCCGTTCCAGGGCGACACCAACCGCGAAATACTGCGCGCCGTGCGTACA
CAGCACCCTAATTTCTCATCCGGTGTATGGACATCCATTTCTCCAGCTAC
CAAACAACTCATCAATGACCTCTTGCACAAGAGCGCTTCTCAGCGACCCA
CTGCCGCAGAGGCATTGGAGCGCGTCAAGTACCTCTCGTCCCAGATGGGT
GAAATAGATTCTAGCTCTCGTCTTCGTCTTCTCACCAAGGGCTTGCGTTC
TGTCAGCCTTAACCTTTGGGACCCATCTGGCAATTTGGTGCGCCATCGAC
GTTCGTCTGACCTCAGAAAGTCAGAACGCTTTGAAAATGCGCGCCGAGCT
CATTCCAGTTTTCCGGCACCTGATGATGCCTCCTCAATGTCCAGCATGCA
AACCTCGCTCGTAATGCGCTCTCACGTAGACTCTGAACTTACAAGCGAAA
ATATGGACCTTGTTCTGTCGCAACAGTACACACCTCAAGAAACCACATAT
ATCAAGGCGTCTAGGCGTCGACGCGCACAAACCCCTCGGTATGATCCTTA
TAGCAATACAGAGTTCCGCACTTCACCTGCTCTTGGTAATGTTTTGGTTC
AAAAGCAGGTCGCGATGGATCAGTCCGACAAAATGGAAATGCATGCATTG
CAGGTGAACCCAGAGGAAACGGTTCTTCGCCATCGTCGTTCTCTGAAAGG
GCGATTAGGCTCTCGAATTCGAAATTGGATAACCATGGGCAATCGCTAA
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protein sequence of Ggra1735.t1

>Ggra1735.t1 ID=Ggra1735.t1|Name=Ggra1735.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=583bp
MSSPSLLAAHHTPRAPHVRSRPRVHRLSDETPEDRQRFPDYSLMRRDRRP
QPMLNIPPPRTAAHIPHLFPDDVLPVPETTTPDLHANYPPNGGYVRATHS
AHVPLTRAPERQHSPLRPWMTPAIVSAGYVVVRVVSEGSFGTVLKAKRSA
DAAWVAIKVVKKVQLTEKDTNALRTQALVLRTIRHNYIVRFIDDFEDDYC
FYHVFEYLSGGDLYDRLESRGKPYTEAQVLFLAKQIFYAIAYLHALRAAH
RDIKLENFVFETTPQDQRQVMKLIDFDLLVVRNSHSPAAETCSDVCGTIL
YVSPEIASAKEHVPEQSDVWACGVMLYVLLSYSMPFQGDTNREILRAVRT
QHPNFSSGVWTSISPATKQLINDLLHKSASQRPTAAEALERVKYLSSQMG
EIDSSSRLRLLTKGLRSVSLNLWDPSGNLVRHRRSSDLRKSERFENARRA
HSSFPAPDDASSMSSMQTSLVMRSHVDSELTSENMDLVLSQQYTPQETTY
IKASRRRRAQTPRYDPYSNTEFRTSPALGNVLVQKQVAMDQSDKMEMHAL
QVNPEETVLRHRRSLKGRLGSRIRNWITMGNR*
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mRNA from alignment at tig00000050_pilon:500331..502079-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1735.t1 ID=Ggra1735.t1|Name=Ggra1735.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1749bp|location=Sequence derived from alignment at tig00000050_pilon:500331..502079- (Gracilaria gracilis GNS1m male)
ATGTCTTCCCCGTCGCTACTCGCAGCACATCATACCCCGCGTGCGCCGCA
CGTGCGCTCGCGCCCCCGCGTTCACCGCCTCTCCGATGAGACGCCTGAGG
ACCGTCAGCGCTTTCCCGACTACTCGCTCATGCGTCGCGATCGACGCCCA
CAGCCCATGCTTAATATCCCGCCCCCACGCACCGCCGCCCACATCCCGCA
CCTCTTTCCCGACGACGTGCTGCCAGTTCCCGAGACCACTACCCCCGATC
TTCACGCCAATTACCCGCCAAACGGCGGCTATGTGCGCGCCACCCACTCG
GCCCATGTCCCGCTCACGCGCGCGCCTGAGCGCCAGCACTCCCCGCTGCG
CCCGTGGATGACGCCTGCCATTGTGTCCGCCGGCTACGTCGTCGTGCGCG
TCGTCAGCGAGGGCAGCTTTGGCACTGTGCTCAAGGCTAAGCGCAGCGCT
GACGCCGCCTGGGTCGCCATCAAGGTTGTCAAAAAGGTCCAGCTCACCGA
GAAGGACACCAACGCCCTCCGAACCCAGGCGCTCGTTCTGCGCACCATTC
GACATAACTACATTGTTCGCTTTATCGACGATTTTGAAGATGACTACTGC
TTTTACCACGTCTTTGAGTACCTCAGCGGCGGCGACTTGTACGACCGTCT
TGAATCGCGAGGCAAGCCCTACACAGAAGCGCAGGTTCTGTTCCTCGCCA
AGCAAATCTTTTATGCTATCGCTTATTTGCATGCTCTGCGCGCCGCGCAC
CGTGATATCAAGCTGGAGAACTTTGTGTTTGAAACCACCCCGCAAGACCA
ACGGCAGGTTATGAAGCTCATAGACTTTGACCTGCTTGTCGTGCGAAACA
GCCATTCACCAGCCGCCGAAACCTGTTCTGATGTCTGCGGTACCATCCTG
TATGTCTCGCCTGAAATCGCCAGTGCCAAGGAACATGTCCCAGAACAGTC
CGACGTGTGGGCTTGCGGTGTCATGCTGTACGTGTTGCTTTCGTATAGTA
TGCCGTTCCAGGGCGACACCAACCGCGAAATACTGCGCGCCGTGCGTACA
CAGCACCCTAATTTCTCATCCGGTGTATGGACATCCATTTCTCCAGCTAC
CAAACAACTCATCAATGACCTCTTGCACAAGAGCGCTTCTCAGCGACCCA
CTGCCGCAGAGGCATTGGAGCGCGTCAAGTACCTCTCGTCCCAGATGGGT
GAAATAGATTCTAGCTCTCGTCTTCGTCTTCTCACCAAGGGCTTGCGTTC
TGTCAGCCTTAACCTTTGGGACCCATCTGGCAATTTGGTGCGCCATCGAC
GTTCGTCTGACCTCAGAAAGTCAGAACGCTTTGAAAATGCGCGCCGAGCT
CATTCCAGTTTTCCGGCACCTGATGATGCCTCCTCAATGTCCAGCATGCA
AACCTCGCTCGTAATGCGCTCTCACGTAGACTCTGAACTTACAAGCGAAA
ATATGGACCTTGTTCTGTCGCAACAGTACACACCTCAAGAAACCACATAT
ATCAAGGCGTCTAGGCGTCGACGCGCACAAACCCCTCGGTATGATCCTTA
TAGCAATACAGAGTTCCGCACTTCACCTGCTCTTGGTAATGTTTTGGTTC
AAAAGCAGGTCGCGATGGATCAGTCCGACAAAATGGAAATGCATGCATTG
CAGGTGAACCCAGAGGAAACGGTTCTTCGCCATCGTCGTTCTCTGAAAGG
GCGATTAGGCTCTCGAATTCGAAATTGGATAACCATGGGCAATCGCTAA
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Coding sequence (CDS) from alignment at tig00000050_pilon:500331..502079-

>Ggra1735.t1 ID=Ggra1735.t1|Name=Ggra1735.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1749bp|location=Sequence derived from alignment at tig00000050_pilon:500331..502079- (Gracilaria gracilis GNS1m male)
ATGTCTTCCCCGTCGCTACTCGCAGCACATCATACCCCGCGTGCGCCGCA
CGTGCGCTCGCGCCCCCGCGTTCACCGCCTCTCCGATGAGACGCCTGAGG
ACCGTCAGCGCTTTCCCGACTACTCGCTCATGCGTCGCGATCGACGCCCA
CAGCCCATGCTTAATATCCCGCCCCCACGCACCGCCGCCCACATCCCGCA
CCTCTTTCCCGACGACGTGCTGCCAGTTCCCGAGACCACTACCCCCGATC
TTCACGCCAATTACCCGCCAAACGGCGGCTATGTGCGCGCCACCCACTCG
GCCCATGTCCCGCTCACGCGCGCGCCTGAGCGCCAGCACTCCCCGCTGCG
CCCGTGGATGACGCCTGCCATTGTGTCCGCCGGCTACGTCGTCGTGCGCG
TCGTCAGCGAGGGCAGCTTTGGCACTGTGCTCAAGGCTAAGCGCAGCGCT
GACGCCGCCTGGGTCGCCATCAAGGTTGTCAAAAAGGTCCAGCTCACCGA
GAAGGACACCAACGCCCTCCGAACCCAGGCGCTCGTTCTGCGCACCATTC
GACATAACTACATTGTTCGCTTTATCGACGATTTTGAAGATGACTACTGC
TTTTACCACGTCTTTGAGTACCTCAGCGGCGGCGACTTGTACGACCGTCT
TGAATCGCGAGGCAAGCCCTACACAGAAGCGCAGGTTCTGTTCCTCGCCA
AGCAAATCTTTTATGCTATCGCTTATTTGCATGCTCTGCGCGCCGCGCAC
CGTGATATCAAGCTGGAGAACTTTGTGTTTGAAACCACCCCGCAAGACCA
ACGGCAGGTTATGAAGCTCATAGACTTTGACCTGCTTGTCGTGCGAAACA
GCCATTCACCAGCCGCCGAAACCTGTTCTGATGTCTGCGGTACCATCCTG
TATGTCTCGCCTGAAATCGCCAGTGCCAAGGAACATGTCCCAGAACAGTC
CGACGTGTGGGCTTGCGGTGTCATGCTGTACGTGTTGCTTTCGTATAGTA
TGCCGTTCCAGGGCGACACCAACCGCGAAATACTGCGCGCCGTGCGTACA
CAGCACCCTAATTTCTCATCCGGTGTATGGACATCCATTTCTCCAGCTAC
CAAACAACTCATCAATGACCTCTTGCACAAGAGCGCTTCTCAGCGACCCA
CTGCCGCAGAGGCATTGGAGCGCGTCAAGTACCTCTCGTCCCAGATGGGT
GAAATAGATTCTAGCTCTCGTCTTCGTCTTCTCACCAAGGGCTTGCGTTC
TGTCAGCCTTAACCTTTGGGACCCATCTGGCAATTTGGTGCGCCATCGAC
GTTCGTCTGACCTCAGAAAGTCAGAACGCTTTGAAAATGCGCGCCGAGCT
CATTCCAGTTTTCCGGCACCTGATGATGCCTCCTCAATGTCCAGCATGCA
AACCTCGCTCGTAATGCGCTCTCACGTAGACTCTGAACTTACAAGCGAAA
ATATGGACCTTGTTCTGTCGCAACAGTACACACCTCAAGAAACCACATAT
ATCAAGGCGTCTAGGCGTCGACGCGCACAAACCCCTCGGTATGATCCTTA
TAGCAATACAGAGTTCCGCACTTCACCTGCTCTTGGTAATGTTTTGGTTC
AAAAGCAGGTCGCGATGGATCAGTCCGACAAAATGGAAATGCATGCATTG
CAGGTGAACCCAGAGGAAACGGTTCTTCGCCATCGTCGTTCTCTGAAAGG
GCGATTAGGCTCTCGAATTCGAAATTGGATAACCATGGGCAATCGCTAA
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