Ggra1734.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1734.t1
Unique NameGgra1734.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length468
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:497743..499146 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707001.1
PFAMsPkinase_Tyr
Max annot lvl2759|Eukaryota
KEGG koko:K04424,ko:K08847
KEGG Pathwayko04010,ko04217,ko04621,ko04623,ko04668,map04010,map04217,map04621,map04623,map04668
GOsGO:0003674,GO:0003824,GO:0004672,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0023052,GO:0035556,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0071704,GO:0140096,GO:1901564
Evalue2.71e-108
EggNOG OGsCOG0515@1|root,KOG0192@2759|Eukaryota
EC2.7.11.1,2.7.11.25
Descriptionprotein kinase activity
COG categoryKLT
BRITEko00000,ko00001,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1734Ggra1734Gracilaria gracilis GNS1m malegenetig00000050_pilon 497743..499146 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1734.t1.stop1Ggra1734.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 497743..497745 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1734.t1.CDS1Ggra1734.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 497743..499146 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1734.t1.exon1Ggra1734.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 497743..499146 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1734.t1.start1Ggra1734.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 499144..499146 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1734.t1Ggra1734.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 497743..499146 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1734.t1 ID=Ggra1734.t1|Name=Ggra1734.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=468bp
MVVFGRKKKKSEPNPDSFDRAVSQDTTPKSISFGPASFSFRGNGFYKALT
SSSKSFRSLKKGFGEGLISPTTPNTAGGFLDTRPSNSQRFGAEDSEAYDE
VVHHSANATPAMSPAMAAIHARTMEDIARQERESKGGQSSQKSGAAAGAS
HGSKHARRQENLPDRLERHRTPRSQNATSAKSSSSKEGLSEHWMIDMKDV
VLSKTIGHSSFGTVNEGRFNGTKVAVKTIHFGSGSNSLDGLSSFRKEAEL
NCKLRHPNIVLFMGIAVQPNKICIVTELMSRGNVRDLLVSKVKGKILRLD
WSLRQQWALDTAQGMAYLHSLRPPMIHRDLKTTNLLVDKGMNVKICDFGL
SRFKTDKLMTAVGTVHFAAPEVLNHERYTEKADLFSFGTVMWELYTRQCV
FQGLPQIEVYSQVVSGNMPDVDRDCDARYRALMKECWTTDPTKRPCFREV
IDRLSVLVDELESDSGG*
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spliced messenger RNA

>Ggra1734.t1 ID=Ggra1734.t1|Name=Ggra1734.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1404bp|location=Sequence derived from alignment at tig00000050_pilon:497743..499146- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGTCTTCGGACGAAAGAAGAAAAAGAGCGAACCGAACCCGGACAG
TTTCGACCGAGCCGTATCACAGGACACGACGCCCAAATCAATATCATTTG
GACCAGCATCATTCAGTTTTCGTGGGAACGGGTTCTACAAGGCCTTGACT
TCCAGCAGCAAATCGTTCCGAAGTTTGAAGAAGGGATTTGGGGAAGGATT
GATATCACCTACAACCCCAAACACCGCAGGGGGCTTTCTGGATACGAGAC
CATCCAATTCACAAAGATTTGGGGCTGAAGACTCCGAAGCTTATGATGAA
GTTGTGCACCATAGTGCTAACGCAACGCCTGCAATGTCCCCCGCTATGGC
GGCTATACACGCGCGAACGATGGAAGATATTGCTAGACAAGAGCGGGAAA
GCAAAGGCGGACAAAGCTCTCAAAAGTCTGGAGCGGCAGCGGGTGCAAGT
CATGGGTCAAAGCATGCTAGAAGACAGGAGAATCTTCCCGACCGCCTTGA
AAGACATCGTACACCTCGCTCACAGAACGCGACGTCGGCAAAGTCATCAT
CGAGCAAGGAGGGGTTGTCAGAACATTGGATGATAGACATGAAAGACGTT
GTTCTAAGCAAAACAATTGGACACAGCTCTTTTGGTACAGTTAATGAAGG
TAGGTTCAATGGCACCAAGGTGGCTGTGAAGACAATTCATTTCGGCTCTG
GTTCGAATTCTTTGGACGGTCTGTCTTCGTTTAGAAAAGAAGCGGAGCTA
AACTGCAAACTTCGACATCCGAATATTGTTTTGTTCATGGGAATAGCCGT
ACAGCCAAACAAGATCTGCATCGTTACAGAGCTTATGTCGAGAGGAAACG
TCCGAGATTTACTCGTTTCGAAAGTGAAGGGTAAAATACTACGACTAGAT
TGGAGTTTGCGGCAGCAATGGGCATTGGATACCGCCCAAGGCATGGCGTA
CCTACACTCATTAAGACCACCTATGATTCATAGGGATCTCAAGACTACAA
ACCTACTAGTGGACAAGGGAATGAATGTGAAAATCTGCGACTTCGGTCTC
TCGCGCTTCAAAACGGACAAGCTTATGACGGCTGTTGGGACTGTTCATTT
TGCCGCGCCAGAAGTTTTAAACCACGAGAGGTATACAGAGAAAGCAGACT
TGTTCTCATTCGGCACTGTGATGTGGGAGTTGTACACAAGACAATGCGTG
TTCCAAGGCCTTCCTCAGATCGAGGTGTACAGCCAGGTTGTTTCTGGAAA
TATGCCGGACGTGGACAGGGATTGCGACGCGCGGTATAGGGCGTTGATGA
AGGAATGTTGGACAACAGATCCCACAAAGCGACCGTGTTTCCGGGAGGTT
ATTGATCGACTAAGCGTATTGGTTGATGAACTAGAATCTGATTCCGGAGG
TTAA
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protein sequence of Ggra1734.t1

>Ggra1734.t1 ID=Ggra1734.t1|Name=Ggra1734.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=468bp
MVVFGRKKKKSEPNPDSFDRAVSQDTTPKSISFGPASFSFRGNGFYKALT
SSSKSFRSLKKGFGEGLISPTTPNTAGGFLDTRPSNSQRFGAEDSEAYDE
VVHHSANATPAMSPAMAAIHARTMEDIARQERESKGGQSSQKSGAAAGAS
HGSKHARRQENLPDRLERHRTPRSQNATSAKSSSSKEGLSEHWMIDMKDV
VLSKTIGHSSFGTVNEGRFNGTKVAVKTIHFGSGSNSLDGLSSFRKEAEL
NCKLRHPNIVLFMGIAVQPNKICIVTELMSRGNVRDLLVSKVKGKILRLD
WSLRQQWALDTAQGMAYLHSLRPPMIHRDLKTTNLLVDKGMNVKICDFGL
SRFKTDKLMTAVGTVHFAAPEVLNHERYTEKADLFSFGTVMWELYTRQCV
FQGLPQIEVYSQVVSGNMPDVDRDCDARYRALMKECWTTDPTKRPCFREV
IDRLSVLVDELESDSGG*
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mRNA from alignment at tig00000050_pilon:497743..499146-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1734.t1 ID=Ggra1734.t1|Name=Ggra1734.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1404bp|location=Sequence derived from alignment at tig00000050_pilon:497743..499146- (Gracilaria gracilis GNS1m male)
ATGGTTGTCTTCGGACGAAAGAAGAAAAAGAGCGAACCGAACCCGGACAG
TTTCGACCGAGCCGTATCACAGGACACGACGCCCAAATCAATATCATTTG
GACCAGCATCATTCAGTTTTCGTGGGAACGGGTTCTACAAGGCCTTGACT
TCCAGCAGCAAATCGTTCCGAAGTTTGAAGAAGGGATTTGGGGAAGGATT
GATATCACCTACAACCCCAAACACCGCAGGGGGCTTTCTGGATACGAGAC
CATCCAATTCACAAAGATTTGGGGCTGAAGACTCCGAAGCTTATGATGAA
GTTGTGCACCATAGTGCTAACGCAACGCCTGCAATGTCCCCCGCTATGGC
GGCTATACACGCGCGAACGATGGAAGATATTGCTAGACAAGAGCGGGAAA
GCAAAGGCGGACAAAGCTCTCAAAAGTCTGGAGCGGCAGCGGGTGCAAGT
CATGGGTCAAAGCATGCTAGAAGACAGGAGAATCTTCCCGACCGCCTTGA
AAGACATCGTACACCTCGCTCACAGAACGCGACGTCGGCAAAGTCATCAT
CGAGCAAGGAGGGGTTGTCAGAACATTGGATGATAGACATGAAAGACGTT
GTTCTAAGCAAAACAATTGGACACAGCTCTTTTGGTACAGTTAATGAAGG
TAGGTTCAATGGCACCAAGGTGGCTGTGAAGACAATTCATTTCGGCTCTG
GTTCGAATTCTTTGGACGGTCTGTCTTCGTTTAGAAAAGAAGCGGAGCTA
AACTGCAAACTTCGACATCCGAATATTGTTTTGTTCATGGGAATAGCCGT
ACAGCCAAACAAGATCTGCATCGTTACAGAGCTTATGTCGAGAGGAAACG
TCCGAGATTTACTCGTTTCGAAAGTGAAGGGTAAAATACTACGACTAGAT
TGGAGTTTGCGGCAGCAATGGGCATTGGATACCGCCCAAGGCATGGCGTA
CCTACACTCATTAAGACCACCTATGATTCATAGGGATCTCAAGACTACAA
ACCTACTAGTGGACAAGGGAATGAATGTGAAAATCTGCGACTTCGGTCTC
TCGCGCTTCAAAACGGACAAGCTTATGACGGCTGTTGGGACTGTTCATTT
TGCCGCGCCAGAAGTTTTAAACCACGAGAGGTATACAGAGAAAGCAGACT
TGTTCTCATTCGGCACTGTGATGTGGGAGTTGTACACAAGACAATGCGTG
TTCCAAGGCCTTCCTCAGATCGAGGTGTACAGCCAGGTTGTTTCTGGAAA
TATGCCGGACGTGGACAGGGATTGCGACGCGCGGTATAGGGCGTTGATGA
AGGAATGTTGGACAACAGATCCCACAAAGCGACCGTGTTTCCGGGAGGTT
ATTGATCGACTAAGCGTATTGGTTGATGAACTAGAATCTGATTCCGGAGG
TTAA
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Coding sequence (CDS) from alignment at tig00000050_pilon:497743..499146-

>Ggra1734.t1 ID=Ggra1734.t1|Name=Ggra1734.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1404bp|location=Sequence derived from alignment at tig00000050_pilon:497743..499146- (Gracilaria gracilis GNS1m male)
ATGGTTGTCTTCGGACGAAAGAAGAAAAAGAGCGAACCGAACCCGGACAG
TTTCGACCGAGCCGTATCACAGGACACGACGCCCAAATCAATATCATTTG
GACCAGCATCATTCAGTTTTCGTGGGAACGGGTTCTACAAGGCCTTGACT
TCCAGCAGCAAATCGTTCCGAAGTTTGAAGAAGGGATTTGGGGAAGGATT
GATATCACCTACAACCCCAAACACCGCAGGGGGCTTTCTGGATACGAGAC
CATCCAATTCACAAAGATTTGGGGCTGAAGACTCCGAAGCTTATGATGAA
GTTGTGCACCATAGTGCTAACGCAACGCCTGCAATGTCCCCCGCTATGGC
GGCTATACACGCGCGAACGATGGAAGATATTGCTAGACAAGAGCGGGAAA
GCAAAGGCGGACAAAGCTCTCAAAAGTCTGGAGCGGCAGCGGGTGCAAGT
CATGGGTCAAAGCATGCTAGAAGACAGGAGAATCTTCCCGACCGCCTTGA
AAGACATCGTACACCTCGCTCACAGAACGCGACGTCGGCAAAGTCATCAT
CGAGCAAGGAGGGGTTGTCAGAACATTGGATGATAGACATGAAAGACGTT
GTTCTAAGCAAAACAATTGGACACAGCTCTTTTGGTACAGTTAATGAAGG
TAGGTTCAATGGCACCAAGGTGGCTGTGAAGACAATTCATTTCGGCTCTG
GTTCGAATTCTTTGGACGGTCTGTCTTCGTTTAGAAAAGAAGCGGAGCTA
AACTGCAAACTTCGACATCCGAATATTGTTTTGTTCATGGGAATAGCCGT
ACAGCCAAACAAGATCTGCATCGTTACAGAGCTTATGTCGAGAGGAAACG
TCCGAGATTTACTCGTTTCGAAAGTGAAGGGTAAAATACTACGACTAGAT
TGGAGTTTGCGGCAGCAATGGGCATTGGATACCGCCCAAGGCATGGCGTA
CCTACACTCATTAAGACCACCTATGATTCATAGGGATCTCAAGACTACAA
ACCTACTAGTGGACAAGGGAATGAATGTGAAAATCTGCGACTTCGGTCTC
TCGCGCTTCAAAACGGACAAGCTTATGACGGCTGTTGGGACTGTTCATTT
TGCCGCGCCAGAAGTTTTAAACCACGAGAGGTATACAGAGAAAGCAGACT
TGTTCTCATTCGGCACTGTGATGTGGGAGTTGTACACAAGACAATGCGTG
TTCCAAGGCCTTCCTCAGATCGAGGTGTACAGCCAGGTTGTTTCTGGAAA
TATGCCGGACGTGGACAGGGATTGCGACGCGCGGTATAGGGCGTTGATGA
AGGAATGTTGGACAACAGATCCCACAAAGCGACCGTGTTTCCGGGAGGTT
ATTGATCGACTAAGCGTATTGGTTGATGAACTAGAATCTGATTCCGGAGG
TTAA
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