Ggra1731.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1731.t1
Unique NameGgra1731.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length264
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:489857..490648 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1433126.BN938_1275
PFAMsGlyco_hydro_16
Max annot lvl976|Bacteroidetes
Evalue6.55e-44
EggNOG OGsCOG2273@1|root,COG2273@2|Bacteria,4NVAB@976|Bacteroidetes,2FV4Z@200643|Bacteroidia
DescriptionGlycosyl hydrolases family 16
COG categoryG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1731Ggra1731Gracilaria gracilis GNS1m malegenetig00000050_pilon 489857..490648 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1731.t1.stop1Ggra1731.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 489857..489859 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1731.t1.CDS1Ggra1731.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 489857..490648 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1731.t1.exon1Ggra1731.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 489857..490648 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1731.t1.start1Ggra1731.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 490646..490648 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1731.t1Ggra1731.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 489857..490648 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1731.t1 ID=Ggra1731.t1|Name=Ggra1731.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=264bp
MFRPIREPRKTPPRIDPGRGHRWVQDWEMSDEFESVSRAMPWKRRHRWEI
GHPQWLGRKPSFFKAENVEVRNGRMLIHAREDTAPRGYPAGYGKFSSAFV
RTKKTRLYGYFEIFCTLMDSRMSSAFWLARNTPELWTEIDVFEYSTSDKR
QGTPYSQLFNTNYHIHRHPRGVKYNDPGVYDAGRDLSKEPIKAALDWRED
RIVWYLNDREVRREKNRHHHQPLHVQLDSESFPNWFGLPATGGSHKNNLP
NAFQIHYVRTWYR*
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spliced messenger RNA

>Ggra1731.t1 ID=Ggra1731.t1|Name=Ggra1731.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=792bp|location=Sequence derived from alignment at tig00000050_pilon:489857..490648- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTCGTCCGATACGCGAACCGCGCAAGACTCCTCCCCGAATTGATCC
AGGACGTGGACACCGATGGGTTCAGGACTGGGAAATGTCGGATGAGTTCG
AGTCTGTATCCAGGGCAATGCCCTGGAAACGCCGACACAGGTGGGAAATC
GGACATCCCCAGTGGCTGGGAAGAAAACCATCATTCTTCAAAGCAGAAAA
CGTTGAAGTGCGAAACGGGAGAATGCTCATTCATGCCAGAGAAGATACAG
CTCCAAGAGGGTACCCTGCAGGCTATGGAAAGTTTTCATCCGCATTTGTG
CGTACCAAGAAAACAAGGTTGTACGGCTACTTTGAGATATTCTGTACGCT
TATGGACAGCAGAATGTCAAGCGCTTTTTGGCTTGCCCGCAATACACCAG
AGTTGTGGACGGAGATCGACGTATTTGAATATTCCACATCCGATAAGAGA
CAGGGAACTCCATACAGTCAGCTATTTAACACAAACTATCACATCCATCG
CCACCCGCGAGGAGTGAAGTACAACGACCCGGGTGTGTACGATGCCGGGC
GTGATCTGAGCAAAGAACCAATTAAAGCGGCGTTGGACTGGCGGGAGGAC
AGAATTGTGTGGTATCTGAATGACAGAGAGGTACGCCGAGAGAAGAACAG
GCATCATCATCAACCGCTCCATGTTCAACTTGACTCGGAGTCTTTCCCGA
ACTGGTTCGGTCTTCCTGCGACCGGCGGGTCACACAAGAACAACTTACCG
AACGCATTCCAGATTCACTACGTCCGCACTTGGTACAGGTAA
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protein sequence of Ggra1731.t1

>Ggra1731.t1 ID=Ggra1731.t1|Name=Ggra1731.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=264bp
MFRPIREPRKTPPRIDPGRGHRWVQDWEMSDEFESVSRAMPWKRRHRWEI
GHPQWLGRKPSFFKAENVEVRNGRMLIHAREDTAPRGYPAGYGKFSSAFV
RTKKTRLYGYFEIFCTLMDSRMSSAFWLARNTPELWTEIDVFEYSTSDKR
QGTPYSQLFNTNYHIHRHPRGVKYNDPGVYDAGRDLSKEPIKAALDWRED
RIVWYLNDREVRREKNRHHHQPLHVQLDSESFPNWFGLPATGGSHKNNLP
NAFQIHYVRTWYR*
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mRNA from alignment at tig00000050_pilon:489857..490648-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1731.t1 ID=Ggra1731.t1|Name=Ggra1731.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=792bp|location=Sequence derived from alignment at tig00000050_pilon:489857..490648- (Gracilaria gracilis GNS1m male)
ATGTTTCGTCCGATACGCGAACCGCGCAAGACTCCTCCCCGAATTGATCC
AGGACGTGGACACCGATGGGTTCAGGACTGGGAAATGTCGGATGAGTTCG
AGTCTGTATCCAGGGCAATGCCCTGGAAACGCCGACACAGGTGGGAAATC
GGACATCCCCAGTGGCTGGGAAGAAAACCATCATTCTTCAAAGCAGAAAA
CGTTGAAGTGCGAAACGGGAGAATGCTCATTCATGCCAGAGAAGATACAG
CTCCAAGAGGGTACCCTGCAGGCTATGGAAAGTTTTCATCCGCATTTGTG
CGTACCAAGAAAACAAGGTTGTACGGCTACTTTGAGATATTCTGTACGCT
TATGGACAGCAGAATGTCAAGCGCTTTTTGGCTTGCCCGCAATACACCAG
AGTTGTGGACGGAGATCGACGTATTTGAATATTCCACATCCGATAAGAGA
CAGGGAACTCCATACAGTCAGCTATTTAACACAAACTATCACATCCATCG
CCACCCGCGAGGAGTGAAGTACAACGACCCGGGTGTGTACGATGCCGGGC
GTGATCTGAGCAAAGAACCAATTAAAGCGGCGTTGGACTGGCGGGAGGAC
AGAATTGTGTGGTATCTGAATGACAGAGAGGTACGCCGAGAGAAGAACAG
GCATCATCATCAACCGCTCCATGTTCAACTTGACTCGGAGTCTTTCCCGA
ACTGGTTCGGTCTTCCTGCGACCGGCGGGTCACACAAGAACAACTTACCG
AACGCATTCCAGATTCACTACGTCCGCACTTGGTACAGGTAA
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Coding sequence (CDS) from alignment at tig00000050_pilon:489857..490648-

>Ggra1731.t1 ID=Ggra1731.t1|Name=Ggra1731.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=792bp|location=Sequence derived from alignment at tig00000050_pilon:489857..490648- (Gracilaria gracilis GNS1m male)
ATGTTTCGTCCGATACGCGAACCGCGCAAGACTCCTCCCCGAATTGATCC
AGGACGTGGACACCGATGGGTTCAGGACTGGGAAATGTCGGATGAGTTCG
AGTCTGTATCCAGGGCAATGCCCTGGAAACGCCGACACAGGTGGGAAATC
GGACATCCCCAGTGGCTGGGAAGAAAACCATCATTCTTCAAAGCAGAAAA
CGTTGAAGTGCGAAACGGGAGAATGCTCATTCATGCCAGAGAAGATACAG
CTCCAAGAGGGTACCCTGCAGGCTATGGAAAGTTTTCATCCGCATTTGTG
CGTACCAAGAAAACAAGGTTGTACGGCTACTTTGAGATATTCTGTACGCT
TATGGACAGCAGAATGTCAAGCGCTTTTTGGCTTGCCCGCAATACACCAG
AGTTGTGGACGGAGATCGACGTATTTGAATATTCCACATCCGATAAGAGA
CAGGGAACTCCATACAGTCAGCTATTTAACACAAACTATCACATCCATCG
CCACCCGCGAGGAGTGAAGTACAACGACCCGGGTGTGTACGATGCCGGGC
GTGATCTGAGCAAAGAACCAATTAAAGCGGCGTTGGACTGGCGGGAGGAC
AGAATTGTGTGGTATCTGAATGACAGAGAGGTACGCCGAGAGAAGAACAG
GCATCATCATCAACCGCTCCATGTTCAACTTGACTCGGAGTCTTTCCCGA
ACTGGTTCGGTCTTCCTGCGACCGGCGGGTCACACAAGAACAACTTACCG
AACGCATTCCAGATTCACTACGTCCGCACTTGGTACAGGTAA
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