Ggra1729.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1729.t1
Unique NameGgra1729.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length397
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:487638..488828 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog72019.SARC_11857T0
PFAMszf-MYND
Max annot lvl2759|Eukaryota
Evalue5.76e-52
EggNOG OGs2A8AQ@1|root,2RYG3@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1729Ggra1729Gracilaria gracilis GNS1m malegenetig00000050_pilon 487638..488828 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1729.t1.stop1Ggra1729.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 487638..487640 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1729.t1.CDS1Ggra1729.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 487638..488828 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1729.t1.exon1Ggra1729.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 487638..488828 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1729.t1.start1Ggra1729.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 488826..488828 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1729.t1Ggra1729.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 487638..488828 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1729.t1 ID=Ggra1729.t1|Name=Ggra1729.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=397bp
MPSQREASSDFNDILERLRQCIPPFNGTDPNTSPTWHCKAPRCESYDASQ
PRRLKACSRCKLAYYCNVSCQRSDFAEHKTECKRLAQLQKDFDAHTRQLS
AYTGPLMLEVITDQPRNLFQQHGGHFWEILETRDYCRARCELANEIELMA
HWYEVAPLLEKALTHILELLRLIVSDNLGLRDVVPFTMLRLNQDERCAAF
ITHWVRRMCAHGGEGESIDALHEQSAEGDWLYGNADCYADVFETVPNADP
DAVSIAMLIALCIIKLRIIAKYDADCRQMEIFQATSTGRQLDDGSAQVIA
QSVVGGDGQAQRVAEQERLVELYFDIIHEHNPTLLPSIINPAPLKNCDAP
RYCSRGAPSEAYYVLMGCNRLFVRVPGAEERLKRRFGSHPQYDCHM*
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spliced messenger RNA

>Ggra1729.t1 ID=Ggra1729.t1|Name=Ggra1729.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1191bp|location=Sequence derived from alignment at tig00000050_pilon:487638..488828- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGTCACAACGCGAGGCGTCGAGCGACTTCAACGACATCCTGGAGCG
GTTGCGCCAGTGCATTCCGCCATTCAACGGCACTGACCCCAACACCAGCC
CCACCTGGCACTGCAAGGCCCCCCGCTGCGAGAGCTACGACGCCTCGCAG
CCCCGCCGTCTCAAGGCGTGTTCCCGCTGCAAGCTAGCCTACTACTGCAA
TGTCTCCTGTCAGCGAAGCGACTTTGCAGAGCACAAGACCGAGTGCAAGC
GCCTCGCCCAACTGCAGAAAGACTTCGACGCACACACACGCCAACTCTCC
GCGTACACCGGCCCGCTTATGCTCGAGGTCATCACTGATCAACCGCGCAA
CCTCTTTCAGCAGCATGGCGGTCACTTCTGGGAGATTTTAGAAACGCGCG
ACTACTGCCGCGCTCGATGCGAGCTTGCGAACGAGATCGAGCTCATGGCG
CACTGGTACGAAGTGGCGCCGCTGTTGGAAAAAGCTCTCACGCATATTCT
CGAACTTCTCCGACTCATAGTGTCTGACAACCTTGGTTTGCGTGATGTAG
TGCCTTTCACAATGCTCCGTCTTAACCAGGACGAGCGCTGCGCTGCGTTC
ATTACGCACTGGGTTCGCCGTATGTGCGCGCATGGCGGCGAAGGAGAGTC
GATAGATGCTTTGCACGAGCAGTCCGCCGAGGGTGACTGGCTGTACGGCA
ACGCCGATTGTTACGCCGACGTGTTCGAGACTGTGCCCAACGCTGACCCT
GACGCAGTTTCCATCGCAATGCTGATTGCGCTGTGTATCATAAAGCTGCG
TATCATCGCAAAGTATGACGCTGATTGCCGTCAAATGGAGATATTTCAGG
CGACGTCCACCGGTCGCCAGCTGGACGATGGCAGTGCTCAAGTTATTGCG
CAATCTGTCGTGGGCGGTGACGGACAGGCGCAGCGTGTTGCAGAGCAGGA
AAGGCTCGTGGAGCTATACTTTGATATCATCCATGAGCATAACCCCACAT
TGCTGCCTTCCATCATCAACCCGGCGCCGCTTAAGAACTGTGACGCTCCG
CGGTATTGTTCGCGGGGTGCGCCTTCTGAGGCTTACTACGTGCTTATGGG
CTGCAACCGGCTGTTTGTCCGCGTGCCTGGTGCGGAGGAGCGCCTGAAGA
GACGATTCGGTTCTCATCCGCAATATGATTGCCACATGTGA
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protein sequence of Ggra1729.t1

>Ggra1729.t1 ID=Ggra1729.t1|Name=Ggra1729.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=397bp
MPSQREASSDFNDILERLRQCIPPFNGTDPNTSPTWHCKAPRCESYDASQ
PRRLKACSRCKLAYYCNVSCQRSDFAEHKTECKRLAQLQKDFDAHTRQLS
AYTGPLMLEVITDQPRNLFQQHGGHFWEILETRDYCRARCELANEIELMA
HWYEVAPLLEKALTHILELLRLIVSDNLGLRDVVPFTMLRLNQDERCAAF
ITHWVRRMCAHGGEGESIDALHEQSAEGDWLYGNADCYADVFETVPNADP
DAVSIAMLIALCIIKLRIIAKYDADCRQMEIFQATSTGRQLDDGSAQVIA
QSVVGGDGQAQRVAEQERLVELYFDIIHEHNPTLLPSIINPAPLKNCDAP
RYCSRGAPSEAYYVLMGCNRLFVRVPGAEERLKRRFGSHPQYDCHM*
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mRNA from alignment at tig00000050_pilon:487638..488828-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1729.t1 ID=Ggra1729.t1|Name=Ggra1729.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1191bp|location=Sequence derived from alignment at tig00000050_pilon:487638..488828- (Gracilaria gracilis GNS1m male)
ATGCCGTCACAACGCGAGGCGTCGAGCGACTTCAACGACATCCTGGAGCG
GTTGCGCCAGTGCATTCCGCCATTCAACGGCACTGACCCCAACACCAGCC
CCACCTGGCACTGCAAGGCCCCCCGCTGCGAGAGCTACGACGCCTCGCAG
CCCCGCCGTCTCAAGGCGTGTTCCCGCTGCAAGCTAGCCTACTACTGCAA
TGTCTCCTGTCAGCGAAGCGACTTTGCAGAGCACAAGACCGAGTGCAAGC
GCCTCGCCCAACTGCAGAAAGACTTCGACGCACACACACGCCAACTCTCC
GCGTACACCGGCCCGCTTATGCTCGAGGTCATCACTGATCAACCGCGCAA
CCTCTTTCAGCAGCATGGCGGTCACTTCTGGGAGATTTTAGAAACGCGCG
ACTACTGCCGCGCTCGATGCGAGCTTGCGAACGAGATCGAGCTCATGGCG
CACTGGTACGAAGTGGCGCCGCTGTTGGAAAAAGCTCTCACGCATATTCT
CGAACTTCTCCGACTCATAGTGTCTGACAACCTTGGTTTGCGTGATGTAG
TGCCTTTCACAATGCTCCGTCTTAACCAGGACGAGCGCTGCGCTGCGTTC
ATTACGCACTGGGTTCGCCGTATGTGCGCGCATGGCGGCGAAGGAGAGTC
GATAGATGCTTTGCACGAGCAGTCCGCCGAGGGTGACTGGCTGTACGGCA
ACGCCGATTGTTACGCCGACGTGTTCGAGACTGTGCCCAACGCTGACCCT
GACGCAGTTTCCATCGCAATGCTGATTGCGCTGTGTATCATAAAGCTGCG
TATCATCGCAAAGTATGACGCTGATTGCCGTCAAATGGAGATATTTCAGG
CGACGTCCACCGGTCGCCAGCTGGACGATGGCAGTGCTCAAGTTATTGCG
CAATCTGTCGTGGGCGGTGACGGACAGGCGCAGCGTGTTGCAGAGCAGGA
AAGGCTCGTGGAGCTATACTTTGATATCATCCATGAGCATAACCCCACAT
TGCTGCCTTCCATCATCAACCCGGCGCCGCTTAAGAACTGTGACGCTCCG
CGGTATTGTTCGCGGGGTGCGCCTTCTGAGGCTTACTACGTGCTTATGGG
CTGCAACCGGCTGTTTGTCCGCGTGCCTGGTGCGGAGGAGCGCCTGAAGA
GACGATTCGGTTCTCATCCGCAATATGATTGCCACATGTGA
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Coding sequence (CDS) from alignment at tig00000050_pilon:487638..488828-

>Ggra1729.t1 ID=Ggra1729.t1|Name=Ggra1729.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1191bp|location=Sequence derived from alignment at tig00000050_pilon:487638..488828- (Gracilaria gracilis GNS1m male)
ATGCCGTCACAACGCGAGGCGTCGAGCGACTTCAACGACATCCTGGAGCG
GTTGCGCCAGTGCATTCCGCCATTCAACGGCACTGACCCCAACACCAGCC
CCACCTGGCACTGCAAGGCCCCCCGCTGCGAGAGCTACGACGCCTCGCAG
CCCCGCCGTCTCAAGGCGTGTTCCCGCTGCAAGCTAGCCTACTACTGCAA
TGTCTCCTGTCAGCGAAGCGACTTTGCAGAGCACAAGACCGAGTGCAAGC
GCCTCGCCCAACTGCAGAAAGACTTCGACGCACACACACGCCAACTCTCC
GCGTACACCGGCCCGCTTATGCTCGAGGTCATCACTGATCAACCGCGCAA
CCTCTTTCAGCAGCATGGCGGTCACTTCTGGGAGATTTTAGAAACGCGCG
ACTACTGCCGCGCTCGATGCGAGCTTGCGAACGAGATCGAGCTCATGGCG
CACTGGTACGAAGTGGCGCCGCTGTTGGAAAAAGCTCTCACGCATATTCT
CGAACTTCTCCGACTCATAGTGTCTGACAACCTTGGTTTGCGTGATGTAG
TGCCTTTCACAATGCTCCGTCTTAACCAGGACGAGCGCTGCGCTGCGTTC
ATTACGCACTGGGTTCGCCGTATGTGCGCGCATGGCGGCGAAGGAGAGTC
GATAGATGCTTTGCACGAGCAGTCCGCCGAGGGTGACTGGCTGTACGGCA
ACGCCGATTGTTACGCCGACGTGTTCGAGACTGTGCCCAACGCTGACCCT
GACGCAGTTTCCATCGCAATGCTGATTGCGCTGTGTATCATAAAGCTGCG
TATCATCGCAAAGTATGACGCTGATTGCCGTCAAATGGAGATATTTCAGG
CGACGTCCACCGGTCGCCAGCTGGACGATGGCAGTGCTCAAGTTATTGCG
CAATCTGTCGTGGGCGGTGACGGACAGGCGCAGCGTGTTGCAGAGCAGGA
AAGGCTCGTGGAGCTATACTTTGATATCATCCATGAGCATAACCCCACAT
TGCTGCCTTCCATCATCAACCCGGCGCCGCTTAAGAACTGTGACGCTCCG
CGGTATTGTTCGCGGGGTGCGCCTTCTGAGGCTTACTACGTGCTTATGGG
CTGCAACCGGCTGTTTGTCCGCGTGCCTGGTGCGGAGGAGCGCCTGAAGA
GACGATTCGGTTCTCATCCGCAATATGATTGCCACATGTGA
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