Ggra1728.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1728.t1
Unique Name	Ggra1728.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	592

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000050_pilon	contig	tig00000050_pilon:485500..487275 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1437425.CSEC_1537
PFAMs	GFO_IDH_MocA,Hexapep
Max annot lvl	204428\|Chlamydiae
KEGG rclass	RC00004,RC00166
KEGG ko	ko:K13018
KEGG Reaction	R10100
KEGG Pathway	ko00520,map00520
Evalue	9.71e-112
EggNOG OGs	COG0110@1\|root,COG0673@1\|root,COG0110@2\|Bacteria,COG0673@2\|Bacteria,2JFKU@204428\|Chlamydiae
EC	2.3.1.201
Description	Oxidoreductase family, NAD-binding Rossmann fold
COG category	S
BRITE	ko00000,ko00001,ko01000,ko01005

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1728	Ggra1728	Gracilaria gracilis GNS1m male	gene	tig00000050_pilon 485500..487275 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1728.t1.stop1	Ggra1728.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000050_pilon 485500..485502 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1728.t1.CDS1	Ggra1728.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000050_pilon 485500..487275 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1728.t1.exon1	Ggra1728.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000050_pilon 485500..487275 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1728.t1.start1	Ggra1728.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000050_pilon 487273..487275 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1728.t1	Ggra1728.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000050_pilon 485500..487275 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000050_pilon:485500..487275-
coding sequence from alignment at tig00000050_pilon:485500..487275-

mRNA sequence

>Ggra1728.t1 ID=Ggra1728.t1|Name=Ggra1728.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=592bp
MTPSTRISRSAVHMLVDEGPAPAIIIVGAGKWGANIITTAAALKLSLAIV
DSNSEALALARCNPRIPPACQFFSSLDKALRVLPSAAVVVATPPSTHFAV
AKQAIAANRHVLVEKPLCDTLQHAQQLVDLARSHNVTLMVDHLLHYSVHH
RRMLCLIESGMIGKVTRVAMSRKNFGTVRSEENVLWSFTPHDVSILLAIC
GTNTPTNVSCTGHKIVSTHVEDSVCLQVRFRDGVHAQIDANWMHPFKERR
TIVYGSKGCIVLNEAMPDPSLKKIQAFNWSVKRKLDGTGVKIEKSEGDIL
EYLKDQSIEAVCELEQMETKQPLQVVLEHFLESIKEQTAPRTDGNEGVRV
LRILSAASESLLKNGQSIQLGKASPSLQTFKSFVHPTAVVDQGAVLGKGT
KVWHFSHIMPGAVLSEQCNVGQNVYIGGKAKLGKNVKVQNNVSIYDKVHI
EDDVFLGPSCVLTNVKNPRSHVSRKHEYMSTTIRKGATVGANATIVCGVT
LGRFCFVGAGAVVTKDVPPHAMVYGNPAVVKGWMSTTGVKLKNDYSLTGE
GRNVLTCPETNEVYTLYEDGVQVNGRWHGGPYVIRDETASR*

spliced messenger RNA

>Ggra1728.t1 ID=Ggra1728.t1|Name=Ggra1728.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1776bp|location=Sequence derived from alignment at tig00000050_pilon:485500..487275- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCCCTCTACCCGAATCTCGCGCTCCGCCGTCCACATGCTCGTCGA
CGAAGGCCCCGCGCCAGCTATCATTATCGTGGGCGCTGGGAAATGGGGCG
CCAACATTATCACGACTGCCGCCGCGCTCAAGCTATCCCTTGCCATCGTC
GATAGCAACTCCGAGGCGCTGGCTCTCGCCCGATGTAATCCGCGTATTCC
ACCGGCATGCCAGTTCTTCTCCAGCCTGGACAAGGCCTTGCGTGTTTTGC
CGAGCGCCGCCGTTGTGGTTGCCACTCCACCTTCCACGCATTTCGCCGTC
GCCAAGCAGGCCATTGCTGCCAATCGACATGTGCTGGTTGAGAAGCCCTT
GTGCGATACTTTGCAGCATGCACAACAACTTGTCGATCTTGCGCGCAGTC
ACAACGTCACCCTAATGGTCGATCACCTTCTTCACTACAGCGTGCACCAT
AGGAGAATGCTGTGTCTCATAGAATCGGGAATGATCGGAAAGGTCACTCG
GGTCGCTATGAGTCGAAAGAACTTTGGCACGGTTCGATCCGAGGAGAATG
TTTTGTGGAGCTTCACCCCGCACGATGTGTCCATTCTGCTCGCCATTTGC
GGCACCAATACGCCCACAAACGTTTCGTGCACCGGTCATAAGATTGTTTC
TACCCACGTCGAAGACTCCGTTTGTTTGCAAGTGCGCTTTCGGGATGGTG
TACATGCTCAGATTGATGCAAACTGGATGCATCCTTTTAAGGAGAGGAGA
ACAATTGTGTACGGCTCCAAGGGTTGCATTGTTCTTAACGAGGCTATGCC
GGACCCCAGTCTCAAGAAGATCCAGGCCTTCAACTGGTCTGTCAAACGCA
AACTAGACGGAACAGGTGTCAAAATAGAGAAGAGCGAAGGCGACATTTTG
GAATATCTCAAGGACCAAAGCATTGAAGCCGTTTGTGAGTTGGAGCAAAT
GGAAACGAAACAACCACTTCAAGTCGTCCTTGAGCATTTTCTGGAGTCTA
TCAAGGAGCAAACAGCCCCGCGAACGGATGGAAACGAGGGAGTGCGCGTT
CTTAGAATCCTTTCAGCTGCGAGTGAATCTCTGTTGAAGAACGGCCAGTC
AATACAGCTGGGAAAAGCATCTCCCTCGTTGCAGACTTTCAAATCGTTCG
TGCATCCCACCGCAGTCGTCGACCAGGGCGCCGTTTTGGGAAAAGGTACA
AAAGTATGGCACTTTTCGCACATTATGCCTGGCGCCGTGTTGAGCGAGCA
GTGTAACGTTGGACAGAACGTGTACATAGGAGGAAAAGCCAAACTTGGAA
AGAATGTTAAGGTACAGAACAATGTTTCTATCTATGACAAAGTGCATATC
GAAGACGACGTATTTCTTGGGCCCAGTTGCGTACTGACGAATGTCAAAAA
TCCTAGGTCTCATGTCAGTCGAAAGCATGAGTACATGTCTACCACGATTA
GAAAAGGCGCCACTGTTGGTGCCAACGCGACGATTGTATGTGGGGTGACA
CTCGGACGTTTTTGTTTTGTGGGAGCTGGAGCAGTTGTGACGAAGGACGT
CCCACCGCATGCCATGGTATACGGAAATCCGGCTGTTGTGAAAGGATGGA
TGTCAACGACTGGCGTAAAGTTGAAGAACGATTACTCGTTAACAGGAGAA
GGCCGGAATGTGTTGACATGCCCAGAGACGAACGAGGTGTATACTCTTTA
CGAAGATGGTGTGCAAGTAAATGGTCGATGGCATGGCGGTCCATACGTCA
TTCGAGACGAAACCGCATCGCGATGA

protein sequence of Ggra1728.t1

>Ggra1728.t1 ID=Ggra1728.t1|Name=Ggra1728.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=592bp
MTPSTRISRSAVHMLVDEGPAPAIIIVGAGKWGANIITTAAALKLSLAIV
DSNSEALALARCNPRIPPACQFFSSLDKALRVLPSAAVVVATPPSTHFAV
AKQAIAANRHVLVEKPLCDTLQHAQQLVDLARSHNVTLMVDHLLHYSVHH
RRMLCLIESGMIGKVTRVAMSRKNFGTVRSEENVLWSFTPHDVSILLAIC
GTNTPTNVSCTGHKIVSTHVEDSVCLQVRFRDGVHAQIDANWMHPFKERR
TIVYGSKGCIVLNEAMPDPSLKKIQAFNWSVKRKLDGTGVKIEKSEGDIL
EYLKDQSIEAVCELEQMETKQPLQVVLEHFLESIKEQTAPRTDGNEGVRV
LRILSAASESLLKNGQSIQLGKASPSLQTFKSFVHPTAVVDQGAVLGKGT
KVWHFSHIMPGAVLSEQCNVGQNVYIGGKAKLGKNVKVQNNVSIYDKVHI
EDDVFLGPSCVLTNVKNPRSHVSRKHEYMSTTIRKGATVGANATIVCGVT
LGRFCFVGAGAVVTKDVPPHAMVYGNPAVVKGWMSTTGVKLKNDYSLTGE
GRNVLTCPETNEVYTLYEDGVQVNGRWHGGPYVIRDETASR*

mRNA from alignment at tig00000050_pilon:485500..487275-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1728.t1 ID=Ggra1728.t1|Name=Ggra1728.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1776bp|location=Sequence derived from alignment at tig00000050_pilon:485500..487275- (Gracilaria gracilis GNS1m male)
ATGACGCCCTCTACCCGAATCTCGCGCTCCGCCGTCCACATGCTCGTCGA
CGAAGGCCCCGCGCCAGCTATCATTATCGTGGGCGCTGGGAAATGGGGCG
CCAACATTATCACGACTGCCGCCGCGCTCAAGCTATCCCTTGCCATCGTC
GATAGCAACTCCGAGGCGCTGGCTCTCGCCCGATGTAATCCGCGTATTCC
ACCGGCATGCCAGTTCTTCTCCAGCCTGGACAAGGCCTTGCGTGTTTTGC
CGAGCGCCGCCGTTGTGGTTGCCACTCCACCTTCCACGCATTTCGCCGTC
GCCAAGCAGGCCATTGCTGCCAATCGACATGTGCTGGTTGAGAAGCCCTT
GTGCGATACTTTGCAGCATGCACAACAACTTGTCGATCTTGCGCGCAGTC
ACAACGTCACCCTAATGGTCGATCACCTTCTTCACTACAGCGTGCACCAT
AGGAGAATGCTGTGTCTCATAGAATCGGGAATGATCGGAAAGGTCACTCG
GGTCGCTATGAGTCGAAAGAACTTTGGCACGGTTCGATCCGAGGAGAATG
TTTTGTGGAGCTTCACCCCGCACGATGTGTCCATTCTGCTCGCCATTTGC
GGCACCAATACGCCCACAAACGTTTCGTGCACCGGTCATAAGATTGTTTC
TACCCACGTCGAAGACTCCGTTTGTTTGCAAGTGCGCTTTCGGGATGGTG
TACATGCTCAGATTGATGCAAACTGGATGCATCCTTTTAAGGAGAGGAGA
ACAATTGTGTACGGCTCCAAGGGTTGCATTGTTCTTAACGAGGCTATGCC
GGACCCCAGTCTCAAGAAGATCCAGGCCTTCAACTGGTCTGTCAAACGCA
AACTAGACGGAACAGGTGTCAAAATAGAGAAGAGCGAAGGCGACATTTTG
GAATATCTCAAGGACCAAAGCATTGAAGCCGTTTGTGAGTTGGAGCAAAT
GGAAACGAAACAACCACTTCAAGTCGTCCTTGAGCATTTTCTGGAGTCTA
TCAAGGAGCAAACAGCCCCGCGAACGGATGGAAACGAGGGAGTGCGCGTT
CTTAGAATCCTTTCAGCTGCGAGTGAATCTCTGTTGAAGAACGGCCAGTC
AATACAGCTGGGAAAAGCATCTCCCTCGTTGCAGACTTTCAAATCGTTCG
TGCATCCCACCGCAGTCGTCGACCAGGGCGCCGTTTTGGGAAAAGGTACA
AAAGTATGGCACTTTTCGCACATTATGCCTGGCGCCGTGTTGAGCGAGCA
GTGTAACGTTGGACAGAACGTGTACATAGGAGGAAAAGCCAAACTTGGAA
AGAATGTTAAGGTACAGAACAATGTTTCTATCTATGACAAAGTGCATATC
GAAGACGACGTATTTCTTGGGCCCAGTTGCGTACTGACGAATGTCAAAAA
TCCTAGGTCTCATGTCAGTCGAAAGCATGAGTACATGTCTACCACGATTA
GAAAAGGCGCCACTGTTGGTGCCAACGCGACGATTGTATGTGGGGTGACA
CTCGGACGTTTTTGTTTTGTGGGAGCTGGAGCAGTTGTGACGAAGGACGT
CCCACCGCATGCCATGGTATACGGAAATCCGGCTGTTGTGAAAGGATGGA
TGTCAACGACTGGCGTAAAGTTGAAGAACGATTACTCGTTAACAGGAGAA
GGCCGGAATGTGTTGACATGCCCAGAGACGAACGAGGTGTATACTCTTTA
CGAAGATGGTGTGCAAGTAAATGGTCGATGGCATGGCGGTCCATACGTCA
TTCGAGACGAAACCGCATCGCGATGA

Coding sequence (CDS) from alignment at tig00000050_pilon:485500..487275-

>Ggra1728.t1 ID=Ggra1728.t1|Name=Ggra1728.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1776bp|location=Sequence derived from alignment at tig00000050_pilon:485500..487275- (Gracilaria gracilis GNS1m male)
ATGACGCCCTCTACCCGAATCTCGCGCTCCGCCGTCCACATGCTCGTCGA
CGAAGGCCCCGCGCCAGCTATCATTATCGTGGGCGCTGGGAAATGGGGCG
CCAACATTATCACGACTGCCGCCGCGCTCAAGCTATCCCTTGCCATCGTC
GATAGCAACTCCGAGGCGCTGGCTCTCGCCCGATGTAATCCGCGTATTCC
ACCGGCATGCCAGTTCTTCTCCAGCCTGGACAAGGCCTTGCGTGTTTTGC
CGAGCGCCGCCGTTGTGGTTGCCACTCCACCTTCCACGCATTTCGCCGTC
GCCAAGCAGGCCATTGCTGCCAATCGACATGTGCTGGTTGAGAAGCCCTT
GTGCGATACTTTGCAGCATGCACAACAACTTGTCGATCTTGCGCGCAGTC
ACAACGTCACCCTAATGGTCGATCACCTTCTTCACTACAGCGTGCACCAT
AGGAGAATGCTGTGTCTCATAGAATCGGGAATGATCGGAAAGGTCACTCG
GGTCGCTATGAGTCGAAAGAACTTTGGCACGGTTCGATCCGAGGAGAATG
TTTTGTGGAGCTTCACCCCGCACGATGTGTCCATTCTGCTCGCCATTTGC
GGCACCAATACGCCCACAAACGTTTCGTGCACCGGTCATAAGATTGTTTC
TACCCACGTCGAAGACTCCGTTTGTTTGCAAGTGCGCTTTCGGGATGGTG
TACATGCTCAGATTGATGCAAACTGGATGCATCCTTTTAAGGAGAGGAGA
ACAATTGTGTACGGCTCCAAGGGTTGCATTGTTCTTAACGAGGCTATGCC
GGACCCCAGTCTCAAGAAGATCCAGGCCTTCAACTGGTCTGTCAAACGCA
AACTAGACGGAACAGGTGTCAAAATAGAGAAGAGCGAAGGCGACATTTTG
GAATATCTCAAGGACCAAAGCATTGAAGCCGTTTGTGAGTTGGAGCAAAT
GGAAACGAAACAACCACTTCAAGTCGTCCTTGAGCATTTTCTGGAGTCTA
TCAAGGAGCAAACAGCCCCGCGAACGGATGGAAACGAGGGAGTGCGCGTT
CTTAGAATCCTTTCAGCTGCGAGTGAATCTCTGTTGAAGAACGGCCAGTC
AATACAGCTGGGAAAAGCATCTCCCTCGTTGCAGACTTTCAAATCGTTCG
TGCATCCCACCGCAGTCGTCGACCAGGGCGCCGTTTTGGGAAAAGGTACA
AAAGTATGGCACTTTTCGCACATTATGCCTGGCGCCGTGTTGAGCGAGCA
GTGTAACGTTGGACAGAACGTGTACATAGGAGGAAAAGCCAAACTTGGAA
AGAATGTTAAGGTACAGAACAATGTTTCTATCTATGACAAAGTGCATATC
GAAGACGACGTATTTCTTGGGCCCAGTTGCGTACTGACGAATGTCAAAAA
TCCTAGGTCTCATGTCAGTCGAAAGCATGAGTACATGTCTACCACGATTA
GAAAAGGCGCCACTGTTGGTGCCAACGCGACGATTGTATGTGGGGTGACA
CTCGGACGTTTTTGTTTTGTGGGAGCTGGAGCAGTTGTGACGAAGGACGT
CCCACCGCATGCCATGGTATACGGAAATCCGGCTGTTGTGAAAGGATGGA
TGTCAACGACTGGCGTAAAGTTGAAGAACGATTACTCGTTAACAGGAGAA
GGCCGGAATGTGTTGACATGCCCAGAGACGAACGAGGTGTATACTCTTTA
CGAAGATGGTGTGCAAGTAAATGGTCGATGGCATGGCGGTCCATACGTCA
TTCGAGACGAAACCGCATCGCGATGA