Ggra1727.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1727.t1
Unique Name	Ggra1727.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	288

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000050_pilon	contig	tig00000050_pilon:479122..479985 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	583355.Caka_0059
PFAMs	Big_4,Glyco_hydro_16,RicinB_lectin_2
Max annot lvl	2\|Bacteria
KEGG ko	ko:K20846
Evalue	1.23e-55
EggNOG OGs	COG2273@1\|root,COG2273@2\|Bacteria
EC	3.2.1.83
Description	xyloglucan:xyloglucosyl transferase activity
COG category	G
CAZy	GH16
BRITE	ko00000,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1727	Ggra1727	Gracilaria gracilis GNS1m male	gene	tig00000050_pilon 479122..479985 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1727.t1.start1	Ggra1727.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000050_pilon 479122..479124 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1727.t1.CDS1	Ggra1727.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000050_pilon 479122..479985 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1727.t1.exon1	Ggra1727.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000050_pilon 479122..479985 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1727.t1.stop1	Ggra1727.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000050_pilon 479983..479985 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1727.t1	Ggra1727.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000050_pilon 479122..479985 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000050_pilon:479122..479985+
coding sequence from alignment at tig00000050_pilon:479122..479985+

mRNA sequence

>Ggra1727.t1 ID=Ggra1727.t1|Name=Ggra1727.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=288bp
MKKLLKRSEELKTVVSQQVQSRQEQWHNVKHETMGLLDRLLDRIPSRPAG
KDGRWRFVENVSDEFEGESLNEDKWEPFNRNWRGRAPGWFNRENVVVAND
CLQLHSRLQDAPANYPADYHTFSTAFVRSRAKVKYGYFEAKVQPADSCIA
SAFWFVRNDRESWNEIDVFEVSSKEGFECKYTMNAHVFRVGGETLQRKLH
HPQGISLPFRVCDEPFTAALDWTPEYIKWIVNGHVVRQLANEHWHDEMWV
QFDCETMPNWFGMPRCEMNCDVPCCFKVYYVRAWQRE*

spliced messenger RNA

>Ggra1727.t1 ID=Ggra1727.t1|Name=Ggra1727.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=864bp|location=Sequence derived from alignment at tig00000050_pilon:479122..479985+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGAAACTGCTCAAGCGTTCGGAGGAACTGAAAACAGTGGTGAGTCA
GCAGGTGCAATCGCGTCAGGAACAGTGGCACAACGTGAAGCACGAGACAA
TGGGTTTGTTGGACAGATTATTGGATCGCATTCCGTCGCGTCCAGCCGGA
AAGGACGGAAGGTGGAGATTTGTTGAGAACGTGAGTGACGAGTTCGAAGG
CGAGTCATTAAACGAGGACAAGTGGGAGCCGTTCAACAGAAACTGGAGAG
GGCGAGCGCCCGGGTGGTTCAACCGAGAAAATGTGGTGGTTGCAAATGAT
TGTTTGCAACTGCACTCGCGGCTACAAGATGCGCCGGCCAACTACCCCGC
GGACTACCACACATTCTCGACGGCTTTTGTGCGAAGCAGGGCCAAGGTGA
AGTACGGGTACTTTGAAGCAAAGGTGCAGCCCGCAGACTCTTGCATCGCA
AGTGCGTTCTGGTTTGTGCGCAACGACCGCGAGTCGTGGAATGAAATCGA
TGTGTTCGAAGTGAGTAGTAAGGAGGGATTCGAGTGTAAATATACGATGA
ACGCACATGTGTTCCGCGTCGGGGGTGAAACTCTACAACGCAAGTTACAT
CATCCGCAGGGGATATCGCTGCCATTCCGCGTGTGTGATGAACCATTCAC
AGCGGCGCTGGATTGGACACCGGAATATATCAAGTGGATTGTGAACGGAC
ATGTGGTTCGACAATTAGCTAATGAGCATTGGCACGATGAAATGTGGGTG
CAGTTCGACTGCGAGACGATGCCCAACTGGTTTGGAATGCCCAGGTGTGA
AATGAACTGTGATGTGCCGTGCTGCTTCAAGGTATATTATGTGCGAGCAT
GGCAGCGGGAGTAG

protein sequence of Ggra1727.t1

>Ggra1727.t1 ID=Ggra1727.t1|Name=Ggra1727.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=288bp
MKKLLKRSEELKTVVSQQVQSRQEQWHNVKHETMGLLDRLLDRIPSRPAG
KDGRWRFVENVSDEFEGESLNEDKWEPFNRNWRGRAPGWFNRENVVVAND
CLQLHSRLQDAPANYPADYHTFSTAFVRSRAKVKYGYFEAKVQPADSCIA
SAFWFVRNDRESWNEIDVFEVSSKEGFECKYTMNAHVFRVGGETLQRKLH
HPQGISLPFRVCDEPFTAALDWTPEYIKWIVNGHVVRQLANEHWHDEMWV
QFDCETMPNWFGMPRCEMNCDVPCCFKVYYVRAWQRE*

mRNA from alignment at tig00000050_pilon:479122..479985+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1727.t1 ID=Ggra1727.t1|Name=Ggra1727.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=864bp|location=Sequence derived from alignment at tig00000050_pilon:479122..479985+ (Gracilaria gracilis GNS1m male)
ATGAAGAAACTGCTCAAGCGTTCGGAGGAACTGAAAACAGTGGTGAGTCA
GCAGGTGCAATCGCGTCAGGAACAGTGGCACAACGTGAAGCACGAGACAA
TGGGTTTGTTGGACAGATTATTGGATCGCATTCCGTCGCGTCCAGCCGGA
AAGGACGGAAGGTGGAGATTTGTTGAGAACGTGAGTGACGAGTTCGAAGG
CGAGTCATTAAACGAGGACAAGTGGGAGCCGTTCAACAGAAACTGGAGAG
GGCGAGCGCCCGGGTGGTTCAACCGAGAAAATGTGGTGGTTGCAAATGAT
TGTTTGCAACTGCACTCGCGGCTACAAGATGCGCCGGCCAACTACCCCGC
GGACTACCACACATTCTCGACGGCTTTTGTGCGAAGCAGGGCCAAGGTGA
AGTACGGGTACTTTGAAGCAAAGGTGCAGCCCGCAGACTCTTGCATCGCA
AGTGCGTTCTGGTTTGTGCGCAACGACCGCGAGTCGTGGAATGAAATCGA
TGTGTTCGAAGTGAGTAGTAAGGAGGGATTCGAGTGTAAATATACGATGA
ACGCACATGTGTTCCGCGTCGGGGGTGAAACTCTACAACGCAAGTTACAT
CATCCGCAGGGGATATCGCTGCCATTCCGCGTGTGTGATGAACCATTCAC
AGCGGCGCTGGATTGGACACCGGAATATATCAAGTGGATTGTGAACGGAC
ATGTGGTTCGACAATTAGCTAATGAGCATTGGCACGATGAAATGTGGGTG
CAGTTCGACTGCGAGACGATGCCCAACTGGTTTGGAATGCCCAGGTGTGA
AATGAACTGTGATGTGCCGTGCTGCTTCAAGGTATATTATGTGCGAGCAT
GGCAGCGGGAGTAG

Coding sequence (CDS) from alignment at tig00000050_pilon:479122..479985+

>Ggra1727.t1 ID=Ggra1727.t1|Name=Ggra1727.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=864bp|location=Sequence derived from alignment at tig00000050_pilon:479122..479985+ (Gracilaria gracilis GNS1m male)
ATGAAGAAACTGCTCAAGCGTTCGGAGGAACTGAAAACAGTGGTGAGTCA
GCAGGTGCAATCGCGTCAGGAACAGTGGCACAACGTGAAGCACGAGACAA
TGGGTTTGTTGGACAGATTATTGGATCGCATTCCGTCGCGTCCAGCCGGA
AAGGACGGAAGGTGGAGATTTGTTGAGAACGTGAGTGACGAGTTCGAAGG
CGAGTCATTAAACGAGGACAAGTGGGAGCCGTTCAACAGAAACTGGAGAG
GGCGAGCGCCCGGGTGGTTCAACCGAGAAAATGTGGTGGTTGCAAATGAT
TGTTTGCAACTGCACTCGCGGCTACAAGATGCGCCGGCCAACTACCCCGC
GGACTACCACACATTCTCGACGGCTTTTGTGCGAAGCAGGGCCAAGGTGA
AGTACGGGTACTTTGAAGCAAAGGTGCAGCCCGCAGACTCTTGCATCGCA
AGTGCGTTCTGGTTTGTGCGCAACGACCGCGAGTCGTGGAATGAAATCGA
TGTGTTCGAAGTGAGTAGTAAGGAGGGATTCGAGTGTAAATATACGATGA
ACGCACATGTGTTCCGCGTCGGGGGTGAAACTCTACAACGCAAGTTACAT
CATCCGCAGGGGATATCGCTGCCATTCCGCGTGTGTGATGAACCATTCAC
AGCGGCGCTGGATTGGACACCGGAATATATCAAGTGGATTGTGAACGGAC
ATGTGGTTCGACAATTAGCTAATGAGCATTGGCACGATGAAATGTGGGTG
CAGTTCGACTGCGAGACGATGCCCAACTGGTTTGGAATGCCCAGGTGTGA
AATGAACTGTGATGTGCCGTGCTGCTTCAAGGTATATTATGTGCGAGCAT
GGCAGCGGGAGTAG