Ggra1726.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1726.t1
Unique NameGgra1726.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length279
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:477027..478131 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog583355.Caka_0059
PFAMsBig_4,Glyco_hydro_16,RicinB_lectin_2
Max annot lvl2|Bacteria
KEGG koko:K20846
Evalue2.56e-39
EggNOG OGsCOG2273@1|root,COG2273@2|Bacteria
EC3.2.1.83
Descriptionxyloglucan:xyloglucosyl transferase activity
COG categoryG
CAZyGH16
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1726Ggra1726Gracilaria gracilis GNS1m malegenetig00000050_pilon 477027..478131 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1726.t1Ggra1726.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 477027..478131 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1726.t1.start1Ggra1726.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 477027..477029 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1726.t1.CDS1Ggra1726.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 477027..477128 +
Ggra1726.t1.CDS2Ggra1726.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000050_pilon 477214..477421 +
Ggra1726.t1.CDS3Ggra1726.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000050_pilon 477518..477851 +
Ggra1726.t1.CDS4Ggra1726.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000050_pilon 477939..478131 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1726.t1.exon1Ggra1726.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 477027..477128 +
Ggra1726.t1.exon2Ggra1726.t1.exon2Gracilaria gracilis GNS1m maleexontig00000050_pilon 477214..477421 +
Ggra1726.t1.exon3Ggra1726.t1.exon3Gracilaria gracilis GNS1m maleexontig00000050_pilon 477518..477851 +
Ggra1726.t1.exon4Ggra1726.t1.exon4Gracilaria gracilis GNS1m maleexontig00000050_pilon 477939..478131 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1726.t1.intron1Ggra1726.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000050_pilon 477129..477213 +
Ggra1726.t1.intron2Ggra1726.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000050_pilon 477422..477517 +
Ggra1726.t1.intron3Ggra1726.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000050_pilon 477852..477938 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1726.t1.stop1Ggra1726.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 478129..478131 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1726.t1 ID=Ggra1726.t1|Name=Ggra1726.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=279bp
MSRFLGCGCPQRPQYEVEPCVWAGRSNDWEPVHALTDEFRGSTLNLHKWY
PYSPFSFGTKPGLFIPSNVSVSNQRACLRAEFGDLPSDAPSGYKQWATSA
LVSQSRQLYGYFECRFRASDTAMVSRFMLIAKRKRKEMSVDVFSYSAQGE
NKRLVYMDAMFSAKNEDGQKVEATHPLKKIILDMPEHPVTVGIDWTPDHL
KTYVDGHVIRHLENKYWHSPMHVGFFLETLPDRFGMPDKEQLKSRASMEI
NYVRAWHRTKGDRQERTPGMKDESENKI*
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spliced messenger RNA

>Ggra1726.t1 ID=Ggra1726.t1|Name=Ggra1726.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=837bp|location=Sequence derived from alignment at tig00000050_pilon:477027..478131+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCAGATTTCTCGGCTGTGGATGCCCCCAACGCCCGCAATATGAGGT
GGAGCCGTGCGTGTGGGCGGGACGCTCCAATGACTGGGAACCAGTGCATG
CGTTAACGGACGAATTCCGAGGTTCTACGTTGAACTTGCACAAATGGTAT
CCATATTCTCCCTTTTCTTTCGGCACAAAGCCTGGTCTGTTCATTCCATC
CAATGTATCTGTTTCGAATCAGAGAGCATGTCTTCGGGCAGAGTTCGGTG
ACTTACCCAGTGATGCACCCTCTGGTTACAAACAATGGGCAACCAGTGCT
CTGGTTTCGCAATCTCGCCAATTATACGGATACTTTGAATGCCGATTCAG
GGCCAGCGATACTGCCATGGTATCGCGGTTTATGCTGATAGCAAAACGGA
AGAGAAAGGAAATGAGCGTTGATGTTTTTTCGTACAGCGCGCAGGGGGAG
AACAAACGATTGGTGTACATGGACGCCATGTTTTCCGCGAAGAATGAAGA
CGGACAAAAGGTCGAAGCCACGCATCCGCTGAAAAAGATTATCCTTGACA
TGCCGGAACATCCTGTCACCGTTGGCATTGACTGGACTCCGGACCATCTG
AAGACCTATGTTGACGGCCATGTGATTCGGCATCTTGAAAACAAGTACTG
GCATTCGCCGATGCATGTCGGATTCTTTCTGGAAACTCTTCCTGATAGGT
TTGGAATGCCCGACAAGGAACAGTTGAAGAGTCGTGCATCTATGGAGATT
AATTACGTCCGAGCGTGGCATCGCACCAAGGGCGATAGACAAGAACGAAC
GCCCGGTATGAAAGATGAATCAGAGAACAAAATATGA
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protein sequence of Ggra1726.t1

>Ggra1726.t1 ID=Ggra1726.t1|Name=Ggra1726.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=279bp
MSRFLGCGCPQRPQYEVEPCVWAGRSNDWEPVHALTDEFRGSTLNLHKWY
PYSPFSFGTKPGLFIPSNVSVSNQRACLRAEFGDLPSDAPSGYKQWATSA
LVSQSRQLYGYFECRFRASDTAMVSRFMLIAKRKRKEMSVDVFSYSAQGE
NKRLVYMDAMFSAKNEDGQKVEATHPLKKIILDMPEHPVTVGIDWTPDHL
KTYVDGHVIRHLENKYWHSPMHVGFFLETLPDRFGMPDKEQLKSRASMEI
NYVRAWHRTKGDRQERTPGMKDESENKI*
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mRNA from alignment at tig00000050_pilon:477027..478131+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1726.t1 ID=Ggra1726.t1|Name=Ggra1726.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1105bp|location=Sequence derived from alignment at tig00000050_pilon:477027..478131+ (Gracilaria gracilis GNS1m male)
ATGAGCAGATTTCTCGGCTGTGGATGCCCCCAACGCCCGCAATATGAGGT
GGAGCCGTGCGTGTGGGCGGGACGCTCCAATGACTGGGAACCAGTGCATG
CGGTAAGTAACCAAACAGTTCGGGTTGGGATCGCACGTACCGTAGTTCCG
TAATTCGCTGACTTCCCTTTCTCTGACTACTGAGAAGTTAACGGACGAAT
TCCGAGGTTCTACGTTGAACTTGCACAAATGGTATCCATATTCTCCCTTT
TCTTTCGGCACAAAGCCTGGTCTGTTCATTCCATCCAATGTATCTGTTTC
GAATCAGAGAGCATGTCTTCGGGCAGAGTTCGGTGACTTACCCAGTGATG
CACCCTCTGGTTACAAACAATGGGCAACCAGTGCTCTGGTTTCGCGTAAG
TTTCGCAATGTATCCGCGAAGATAATACATCAAAAGTTGAATCGATCTAA
TCCGAATATAATAGACTGACATGCTTTGTTCTCGAGTGTAGAATCTCGCC
AATTATACGGATACTTTGAATGCCGATTCAGGGCCAGCGATACTGCCATG
GTATCGCGGTTTATGCTGATAGCAAAACGGAAGAGAAAGGAAATGAGCGT
TGATGTTTTTTCGTACAGCGCGCAGGGGGAGAACAAACGATTGGTGTACA
TGGACGCCATGTTTTCCGCGAAGAATGAAGACGGACAAAAGGTCGAAGCC
ACGCATCCGCTGAAAAAGATTATCCTTGACATGCCGGAACATCCTGTCAC
CGTTGGCATTGACTGGACTCCGGACCATCTGAAGACCTATGTTGACGGCC
ATGTGATTCGGCATCTTGAAAACAAGTACGTAGAAGTTGGGAACGTAATA
GATGGAGAAAACTAACGTTCAATATGCTGACTATAGACATGTCTGCGTTC
ACTGCTGTACAGGTACTGGCATTCGCCGATGCATGTCGGATTCTTTCTGG
AAACTCTTCCTGATAGGTTTGGAATGCCCGACAAGGAACAGTTGAAGAGT
CGTGCATCTATGGAGATTAATTACGTCCGAGCGTGGCATCGCACCAAGGG
CGATAGACAAGAACGAACGCCCGGTATGAAAGATGAATCAGAGAACAAAA
TATGA
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Coding sequence (CDS) from alignment at tig00000050_pilon:477027..478131+

>Ggra1726.t1 ID=Ggra1726.t1|Name=Ggra1726.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=837bp|location=Sequence derived from alignment at tig00000050_pilon:477027..478131+ (Gracilaria gracilis GNS1m male)
ATGAGCAGATTTCTCGGCTGTGGATGCCCCCAACGCCCGCAATATGAGGT
GGAGCCGTGCGTGTGGGCGGGACGCTCCAATGACTGGGAACCAGTGCATG
CGTTAACGGACGAATTCCGAGGTTCTACGTTGAACTTGCACAAATGGTAT
CCATATTCTCCCTTTTCTTTCGGCACAAAGCCTGGTCTGTTCATTCCATC
CAATGTATCTGTTTCGAATCAGAGAGCATGTCTTCGGGCAGAGTTCGGTG
ACTTACCCAGTGATGCACCCTCTGGTTACAAACAATGGGCAACCAGTGCT
CTGGTTTCGCAATCTCGCCAATTATACGGATACTTTGAATGCCGATTCAG
GGCCAGCGATACTGCCATGGTATCGCGGTTTATGCTGATAGCAAAACGGA
AGAGAAAGGAAATGAGCGTTGATGTTTTTTCGTACAGCGCGCAGGGGGAG
AACAAACGATTGGTGTACATGGACGCCATGTTTTCCGCGAAGAATGAAGA
CGGACAAAAGGTCGAAGCCACGCATCCGCTGAAAAAGATTATCCTTGACA
TGCCGGAACATCCTGTCACCGTTGGCATTGACTGGACTCCGGACCATCTG
AAGACCTATGTTGACGGCCATGTGATTCGGCATCTTGAAAACAAGTACTG
GCATTCGCCGATGCATGTCGGATTCTTTCTGGAAACTCTTCCTGATAGGT
TTGGAATGCCCGACAAGGAACAGTTGAAGAGTCGTGCATCTATGGAGATT
AATTACGTCCGAGCGTGGCATCGCACCAAGGGCGATAGACAAGAACGAAC
GCCCGGTATGAAAGATGAATCAGAGAACAAAATATGA
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