Ggra1725.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1725.t1
Unique NameGgra1725.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length602
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:472814..474619 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog35720.XP_003649757.1
PFAMsMMR_HSR1
Max annot lvl4751|Fungi
KEGG koko:K14539
KEGG Pathwayko03008,map03008
GOsGO:0000003,GO:0000027,GO:0000054,GO:0000166,GO:0000746,GO:0000747,GO:0001882,GO:0001883,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005937,GO:0006403,GO:0006405,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007049,GO:0008104,GO:0008150,GO:0009653,GO:0009987,GO:0015031,GO:0015833,GO:0015931,GO:0015934,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019953,GO:0022402,GO:0022413,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0030154,GO:0030427,GO:0030435,GO:0030437,GO:0031503,GO:0032502,GO:0032505,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033036,GO:0033750,GO:0034293,GO:0034613,GO:0034622,GO:0035639,GO:0036094,GO:0042254,GO:0042255,GO:0042273,GO:0042886,GO:0042995,GO:0043167,GO:0043168,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043332,GO:0043933,GO:0043934,GO:0043935,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044463,GO:0044464,GO:0044703,GO:0044764,GO:0045184,GO:0046907,GO:0048468,GO:0048646,GO:0048856,GO:0048869,GO:0050657,GO:0050658,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051286,GO:0051321,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051704,GO:0065003,GO:0070727,GO:0070925,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071705,GO:0071826,GO:0071840,GO:0097159,GO:0097367,GO:0120025,GO:0120038,GO:1901265,GO:1901363,GO:1903046,GO:1990904
Evalue2.16e-94
EggNOG OGsCOG1161@1|root,KOG1424@2759|Eukaryota,38DR0@33154|Opisthokonta,3NVEZ@4751|Fungi,3QMUF@4890|Ascomycota,217SD@147550|Sordariomycetes,3U587@5139|Sordariales,3HF8V@35718|Chaetomiaceae
DescriptionFerrous iron transport protein B
COG categoryS
BRITEko00000,ko00001,ko01000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1725Ggra1725Gracilaria gracilis GNS1m malegenetig00000050_pilon 472814..474619 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1725.t1.stop1Ggra1725.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 472814..472816 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1725.t1.CDS1Ggra1725.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 472814..474619 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1725.t1.exon1Ggra1725.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 472814..474619 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1725.t1.start1Ggra1725.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 474617..474619 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1725.t1Ggra1725.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 472814..474619 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1725.t1 ID=Ggra1725.t1|Name=Ggra1725.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=602bp
MPRKGKASDLGRALARRRERDAKEARNHAKTAAGQLAAATGRHTMDFTTE
TRLQSILDATDLEELMLNASQANEDFVAERYARPLAPQTVVVTPMTRRAG
KQEAAARRELDRTALRIPRRPRWDASTTYEQLMTNETDEFLRWRRAIASM
EEQHSLASTIGGPMMTPFEKNLEVWRQLWRVIERSDVVVQIVDARNPLLY
YCEDLYRYVSEEMGRSHLLLLNKSDLLSSVMIERWGHYFESRNIDVVFFS
AFTSSVDEQAHDKNVIGVHDLVEKLSSYERRAPQTQANQRLVVGMCGYPN
VGKSSTINVLLERIATDVASASSDSRLDKGTDICNDEGNGESSIRTDKSV
AENSDISASQSVDHKHHKRVAVSSTPGKTKHFQTLVLTDTVLLCDCPGLV
FPNFSSSKAELICAGVLSIDTMRGDHVTPVSLIAQRIPAAILEGVYGIRF
EHHKPGVFEEEEDAGIQDGYVSGSKLLDTHARARGFMSDHDKPDQSRSAR
VLLKDYVKGRIIYVLGPPGEEGESGIGPDVFAKKGKLVYARTEARKEELA
AREGQSQEEGLDTGYAENGSKATVKARISGRKKRTQAKEFVRVERSFMNT
G*
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spliced messenger RNA

>Ggra1725.t1 ID=Ggra1725.t1|Name=Ggra1725.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1806bp|location=Sequence derived from alignment at tig00000050_pilon:472814..474619- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCAAGGAAAGGAAAAGCATCCGACCTAGGTCGCGCCCTAGCACGAAG
GCGTGAGCGAGATGCAAAAGAGGCAAGAAATCATGCGAAAACAGCGGCAG
GTCAGTTGGCGGCGGCGACTGGTAGACACACCATGGACTTCACCACTGAA
ACAAGACTGCAGTCCATACTGGATGCCACTGATTTGGAGGAGCTCATGTT
GAATGCTTCTCAAGCGAATGAAGATTTTGTCGCGGAACGGTACGCTCGTC
CTTTGGCTCCACAAACGGTAGTTGTCACTCCGATGACTAGACGCGCTGGT
AAACAGGAAGCTGCGGCGAGGAGGGAACTTGATAGAACGGCACTGCGAAT
TCCAAGACGCCCAAGGTGGGATGCCAGCACCACATATGAGCAACTCATGA
CAAATGAAACTGATGAATTTCTGAGGTGGCGGAGAGCAATTGCTTCTATG
GAGGAACAGCATAGTCTGGCTAGTACAATAGGCGGACCTATGATGACTCC
CTTTGAGAAGAATCTTGAAGTATGGAGACAGCTTTGGCGGGTGATAGAGC
GCTCGGATGTTGTGGTTCAGATTGTCGATGCCAGAAATCCGTTGTTGTAT
TATTGTGAAGACTTGTATCGATATGTTTCGGAAGAGATGGGAAGGTCCCA
CTTATTGTTGTTGAACAAATCGGATTTGCTATCATCTGTAATGATTGAAC
GATGGGGGCACTACTTTGAAAGCCGTAACATTGATGTCGTATTCTTCTCC
GCGTTTACATCCAGTGTGGATGAACAGGCTCACGATAAGAATGTTATTGG
TGTTCATGATCTTGTGGAAAAGCTGAGTAGCTATGAGAGAAGAGCACCTC
AAACACAGGCAAACCAACGTCTAGTGGTGGGGATGTGTGGATATCCTAAT
GTTGGAAAGTCATCTACCATCAATGTATTGCTTGAAAGGATTGCAACTGA
CGTGGCATCAGCTTCATCTGACTCTCGACTAGACAAGGGTACTGACATTT
GCAATGACGAAGGCAATGGCGAGAGCAGCATACGTACCGATAAGAGTGTT
GCCGAGAACAGTGACATATCTGCGTCACAATCGGTGGATCACAAGCATCA
CAAACGAGTGGCAGTGTCATCAACGCCAGGCAAGACAAAACACTTCCAGA
CGCTTGTTCTAACGGATACGGTGTTGCTGTGCGATTGCCCTGGGTTAGTA
TTTCCAAACTTTTCATCATCAAAGGCAGAGCTAATATGTGCAGGCGTACT
TTCCATAGATACGATGCGAGGAGATCACGTAACACCTGTATCACTAATTG
CACAACGCATCCCAGCAGCCATACTAGAAGGAGTGTACGGAATTCGGTTT
GAACACCACAAACCGGGCGTTTTTGAGGAAGAGGAAGACGCTGGCATACA
AGATGGATATGTATCCGGAAGCAAACTGCTTGATACACATGCCAGAGCAC
GGGGGTTTATGTCGGACCACGACAAGCCTGATCAGTCGAGAAGTGCACGG
GTGCTGCTAAAGGACTACGTGAAAGGGAGAATTATATATGTGCTTGGGCC
GCCTGGCGAAGAAGGAGAAAGCGGAATCGGCCCTGATGTTTTTGCTAAGA
AGGGTAAACTTGTATATGCGAGAACGGAGGCCAGAAAGGAGGAATTGGCG
GCCAGGGAAGGGCAAAGCCAGGAGGAAGGACTAGACACAGGTTATGCAGA
GAACGGGAGCAAGGCAACAGTGAAAGCGCGAATTAGTGGACGAAAGAAAC
GCACTCAAGCTAAGGAATTCGTACGAGTGGAGCGGAGTTTTATGAACACG
GGATAA
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protein sequence of Ggra1725.t1

>Ggra1725.t1 ID=Ggra1725.t1|Name=Ggra1725.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=602bp
MPRKGKASDLGRALARRRERDAKEARNHAKTAAGQLAAATGRHTMDFTTE
TRLQSILDATDLEELMLNASQANEDFVAERYARPLAPQTVVVTPMTRRAG
KQEAAARRELDRTALRIPRRPRWDASTTYEQLMTNETDEFLRWRRAIASM
EEQHSLASTIGGPMMTPFEKNLEVWRQLWRVIERSDVVVQIVDARNPLLY
YCEDLYRYVSEEMGRSHLLLLNKSDLLSSVMIERWGHYFESRNIDVVFFS
AFTSSVDEQAHDKNVIGVHDLVEKLSSYERRAPQTQANQRLVVGMCGYPN
VGKSSTINVLLERIATDVASASSDSRLDKGTDICNDEGNGESSIRTDKSV
AENSDISASQSVDHKHHKRVAVSSTPGKTKHFQTLVLTDTVLLCDCPGLV
FPNFSSSKAELICAGVLSIDTMRGDHVTPVSLIAQRIPAAILEGVYGIRF
EHHKPGVFEEEEDAGIQDGYVSGSKLLDTHARARGFMSDHDKPDQSRSAR
VLLKDYVKGRIIYVLGPPGEEGESGIGPDVFAKKGKLVYARTEARKEELA
AREGQSQEEGLDTGYAENGSKATVKARISGRKKRTQAKEFVRVERSFMNT
G*
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mRNA from alignment at tig00000050_pilon:472814..474619-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1725.t1 ID=Ggra1725.t1|Name=Ggra1725.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1806bp|location=Sequence derived from alignment at tig00000050_pilon:472814..474619- (Gracilaria gracilis GNS1m male)
ATGCCAAGGAAAGGAAAAGCATCCGACCTAGGTCGCGCCCTAGCACGAAG
GCGTGAGCGAGATGCAAAAGAGGCAAGAAATCATGCGAAAACAGCGGCAG
GTCAGTTGGCGGCGGCGACTGGTAGACACACCATGGACTTCACCACTGAA
ACAAGACTGCAGTCCATACTGGATGCCACTGATTTGGAGGAGCTCATGTT
GAATGCTTCTCAAGCGAATGAAGATTTTGTCGCGGAACGGTACGCTCGTC
CTTTGGCTCCACAAACGGTAGTTGTCACTCCGATGACTAGACGCGCTGGT
AAACAGGAAGCTGCGGCGAGGAGGGAACTTGATAGAACGGCACTGCGAAT
TCCAAGACGCCCAAGGTGGGATGCCAGCACCACATATGAGCAACTCATGA
CAAATGAAACTGATGAATTTCTGAGGTGGCGGAGAGCAATTGCTTCTATG
GAGGAACAGCATAGTCTGGCTAGTACAATAGGCGGACCTATGATGACTCC
CTTTGAGAAGAATCTTGAAGTATGGAGACAGCTTTGGCGGGTGATAGAGC
GCTCGGATGTTGTGGTTCAGATTGTCGATGCCAGAAATCCGTTGTTGTAT
TATTGTGAAGACTTGTATCGATATGTTTCGGAAGAGATGGGAAGGTCCCA
CTTATTGTTGTTGAACAAATCGGATTTGCTATCATCTGTAATGATTGAAC
GATGGGGGCACTACTTTGAAAGCCGTAACATTGATGTCGTATTCTTCTCC
GCGTTTACATCCAGTGTGGATGAACAGGCTCACGATAAGAATGTTATTGG
TGTTCATGATCTTGTGGAAAAGCTGAGTAGCTATGAGAGAAGAGCACCTC
AAACACAGGCAAACCAACGTCTAGTGGTGGGGATGTGTGGATATCCTAAT
GTTGGAAAGTCATCTACCATCAATGTATTGCTTGAAAGGATTGCAACTGA
CGTGGCATCAGCTTCATCTGACTCTCGACTAGACAAGGGTACTGACATTT
GCAATGACGAAGGCAATGGCGAGAGCAGCATACGTACCGATAAGAGTGTT
GCCGAGAACAGTGACATATCTGCGTCACAATCGGTGGATCACAAGCATCA
CAAACGAGTGGCAGTGTCATCAACGCCAGGCAAGACAAAACACTTCCAGA
CGCTTGTTCTAACGGATACGGTGTTGCTGTGCGATTGCCCTGGGTTAGTA
TTTCCAAACTTTTCATCATCAAAGGCAGAGCTAATATGTGCAGGCGTACT
TTCCATAGATACGATGCGAGGAGATCACGTAACACCTGTATCACTAATTG
CACAACGCATCCCAGCAGCCATACTAGAAGGAGTGTACGGAATTCGGTTT
GAACACCACAAACCGGGCGTTTTTGAGGAAGAGGAAGACGCTGGCATACA
AGATGGATATGTATCCGGAAGCAAACTGCTTGATACACATGCCAGAGCAC
GGGGGTTTATGTCGGACCACGACAAGCCTGATCAGTCGAGAAGTGCACGG
GTGCTGCTAAAGGACTACGTGAAAGGGAGAATTATATATGTGCTTGGGCC
GCCTGGCGAAGAAGGAGAAAGCGGAATCGGCCCTGATGTTTTTGCTAAGA
AGGGTAAACTTGTATATGCGAGAACGGAGGCCAGAAAGGAGGAATTGGCG
GCCAGGGAAGGGCAAAGCCAGGAGGAAGGACTAGACACAGGTTATGCAGA
GAACGGGAGCAAGGCAACAGTGAAAGCGCGAATTAGTGGACGAAAGAAAC
GCACTCAAGCTAAGGAATTCGTACGAGTGGAGCGGAGTTTTATGAACACG
GGATAA
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Coding sequence (CDS) from alignment at tig00000050_pilon:472814..474619-

>Ggra1725.t1 ID=Ggra1725.t1|Name=Ggra1725.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1806bp|location=Sequence derived from alignment at tig00000050_pilon:472814..474619- (Gracilaria gracilis GNS1m male)
ATGCCAAGGAAAGGAAAAGCATCCGACCTAGGTCGCGCCCTAGCACGAAG
GCGTGAGCGAGATGCAAAAGAGGCAAGAAATCATGCGAAAACAGCGGCAG
GTCAGTTGGCGGCGGCGACTGGTAGACACACCATGGACTTCACCACTGAA
ACAAGACTGCAGTCCATACTGGATGCCACTGATTTGGAGGAGCTCATGTT
GAATGCTTCTCAAGCGAATGAAGATTTTGTCGCGGAACGGTACGCTCGTC
CTTTGGCTCCACAAACGGTAGTTGTCACTCCGATGACTAGACGCGCTGGT
AAACAGGAAGCTGCGGCGAGGAGGGAACTTGATAGAACGGCACTGCGAAT
TCCAAGACGCCCAAGGTGGGATGCCAGCACCACATATGAGCAACTCATGA
CAAATGAAACTGATGAATTTCTGAGGTGGCGGAGAGCAATTGCTTCTATG
GAGGAACAGCATAGTCTGGCTAGTACAATAGGCGGACCTATGATGACTCC
CTTTGAGAAGAATCTTGAAGTATGGAGACAGCTTTGGCGGGTGATAGAGC
GCTCGGATGTTGTGGTTCAGATTGTCGATGCCAGAAATCCGTTGTTGTAT
TATTGTGAAGACTTGTATCGATATGTTTCGGAAGAGATGGGAAGGTCCCA
CTTATTGTTGTTGAACAAATCGGATTTGCTATCATCTGTAATGATTGAAC
GATGGGGGCACTACTTTGAAAGCCGTAACATTGATGTCGTATTCTTCTCC
GCGTTTACATCCAGTGTGGATGAACAGGCTCACGATAAGAATGTTATTGG
TGTTCATGATCTTGTGGAAAAGCTGAGTAGCTATGAGAGAAGAGCACCTC
AAACACAGGCAAACCAACGTCTAGTGGTGGGGATGTGTGGATATCCTAAT
GTTGGAAAGTCATCTACCATCAATGTATTGCTTGAAAGGATTGCAACTGA
CGTGGCATCAGCTTCATCTGACTCTCGACTAGACAAGGGTACTGACATTT
GCAATGACGAAGGCAATGGCGAGAGCAGCATACGTACCGATAAGAGTGTT
GCCGAGAACAGTGACATATCTGCGTCACAATCGGTGGATCACAAGCATCA
CAAACGAGTGGCAGTGTCATCAACGCCAGGCAAGACAAAACACTTCCAGA
CGCTTGTTCTAACGGATACGGTGTTGCTGTGCGATTGCCCTGGGTTAGTA
TTTCCAAACTTTTCATCATCAAAGGCAGAGCTAATATGTGCAGGCGTACT
TTCCATAGATACGATGCGAGGAGATCACGTAACACCTGTATCACTAATTG
CACAACGCATCCCAGCAGCCATACTAGAAGGAGTGTACGGAATTCGGTTT
GAACACCACAAACCGGGCGTTTTTGAGGAAGAGGAAGACGCTGGCATACA
AGATGGATATGTATCCGGAAGCAAACTGCTTGATACACATGCCAGAGCAC
GGGGGTTTATGTCGGACCACGACAAGCCTGATCAGTCGAGAAGTGCACGG
GTGCTGCTAAAGGACTACGTGAAAGGGAGAATTATATATGTGCTTGGGCC
GCCTGGCGAAGAAGGAGAAAGCGGAATCGGCCCTGATGTTTTTGCTAAGA
AGGGTAAACTTGTATATGCGAGAACGGAGGCCAGAAAGGAGGAATTGGCG
GCCAGGGAAGGGCAAAGCCAGGAGGAAGGACTAGACACAGGTTATGCAGA
GAACGGGAGCAAGGCAACAGTGAAAGCGCGAATTAGTGGACGAAAGAAAC
GCACTCAAGCTAAGGAATTCGTACGAGTGGAGCGGAGTTTTATGAACACG
GGATAA
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