Ggra1724.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1724.t1
Unique NameGgra1724.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length201
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:472186..472788 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708785.1
PFAMsAhpC-TSA
Max annot lvl2759|Eukaryota
KEGG koko:K03564
Evalue1.96e-40
EggNOG OGsCOG1225@1|root,KOG0855@2759|Eukaryota
EC1.11.1.15
Descriptionperoxiredoxin activity
COG categoryO
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1724Ggra1724Gracilaria gracilis GNS1m malegenetig00000050_pilon 472186..472788 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1724.t1.start1Ggra1724.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 472186..472188 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1724.t1.CDS1Ggra1724.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 472186..472788 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1724.t1.exon1Ggra1724.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 472186..472788 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1724.t1.stop1Ggra1724.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 472786..472788 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1724.t1Ggra1724.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 472186..472788 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1724.t1 ID=Ggra1724.t1|Name=Ggra1724.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=201bp
MAFVPSAARLPQLRASISLHSCSSTASKFIAARVPNRSRLAIRRFVAATP
TMVAEGQSAPDFERTDIDGNNIKLSELRGTNVVLYFSALQGPGCTSQSCT
FRDAAEDFASLDAKIIAISAQADSKNSQFKRANRLSFPIISDSDKQLQKM
YGVPSTFGLIPGRVTYVIDKEGVIRKIFNSQFNVTQHVAIAKETLQSLDK
*
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spliced messenger RNA

>Ggra1724.t1 ID=Ggra1724.t1|Name=Ggra1724.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=603bp|location=Sequence derived from alignment at tig00000050_pilon:472186..472788+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTTCGTTCCTTCTGCTGCGCGTCTTCCGCAGCTTCGCGCTTCTAT
ATCACTCCACTCGTGCTCCTCAACAGCATCCAAATTCATCGCCGCCCGTG
TGCCAAATCGCTCCCGTCTTGCCATTCGCCGCTTCGTCGCCGCCACCCCC
ACCATGGTTGCCGAAGGCCAATCGGCGCCCGATTTCGAACGTACCGACAT
CGACGGCAACAATATCAAGCTGTCAGAGCTCCGTGGAACCAATGTTGTTC
TCTACTTCAGTGCTCTGCAAGGGCCTGGTTGCACTTCTCAATCCTGCACC
TTTCGTGACGCCGCAGAGGATTTCGCAAGCTTAGATGCCAAGATCATTGC
CATCTCAGCGCAGGCAGACAGCAAGAATTCTCAGTTTAAGCGCGCTAACC
GCTTGTCGTTTCCCATAATTTCGGATTCAGACAAACAGTTGCAGAAGATG
TACGGAGTTCCTTCCACCTTTGGACTCATTCCGGGAAGAGTTACCTATGT
CATTGACAAGGAGGGTGTTATTCGAAAGATATTCAATTCCCAGTTTAATG
TTACACAGCACGTTGCTATCGCAAAGGAAACCTTGCAATCACTAGACAAG
TAA
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protein sequence of Ggra1724.t1

>Ggra1724.t1 ID=Ggra1724.t1|Name=Ggra1724.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=201bp
MAFVPSAARLPQLRASISLHSCSSTASKFIAARVPNRSRLAIRRFVAATP
TMVAEGQSAPDFERTDIDGNNIKLSELRGTNVVLYFSALQGPGCTSQSCT
FRDAAEDFASLDAKIIAISAQADSKNSQFKRANRLSFPIISDSDKQLQKM
YGVPSTFGLIPGRVTYVIDKEGVIRKIFNSQFNVTQHVAIAKETLQSLDK
*
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mRNA from alignment at tig00000050_pilon:472186..472788+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1724.t1 ID=Ggra1724.t1|Name=Ggra1724.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=603bp|location=Sequence derived from alignment at tig00000050_pilon:472186..472788+ (Gracilaria gracilis GNS1m male)
ATGGCCTTCGTTCCTTCTGCTGCGCGTCTTCCGCAGCTTCGCGCTTCTAT
ATCACTCCACTCGTGCTCCTCAACAGCATCCAAATTCATCGCCGCCCGTG
TGCCAAATCGCTCCCGTCTTGCCATTCGCCGCTTCGTCGCCGCCACCCCC
ACCATGGTTGCCGAAGGCCAATCGGCGCCCGATTTCGAACGTACCGACAT
CGACGGCAACAATATCAAGCTGTCAGAGCTCCGTGGAACCAATGTTGTTC
TCTACTTCAGTGCTCTGCAAGGGCCTGGTTGCACTTCTCAATCCTGCACC
TTTCGTGACGCCGCAGAGGATTTCGCAAGCTTAGATGCCAAGATCATTGC
CATCTCAGCGCAGGCAGACAGCAAGAATTCTCAGTTTAAGCGCGCTAACC
GCTTGTCGTTTCCCATAATTTCGGATTCAGACAAACAGTTGCAGAAGATG
TACGGAGTTCCTTCCACCTTTGGACTCATTCCGGGAAGAGTTACCTATGT
CATTGACAAGGAGGGTGTTATTCGAAAGATATTCAATTCCCAGTTTAATG
TTACACAGCACGTTGCTATCGCAAAGGAAACCTTGCAATCACTAGACAAG
TAA
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Coding sequence (CDS) from alignment at tig00000050_pilon:472186..472788+

>Ggra1724.t1 ID=Ggra1724.t1|Name=Ggra1724.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=603bp|location=Sequence derived from alignment at tig00000050_pilon:472186..472788+ (Gracilaria gracilis GNS1m male)
ATGGCCTTCGTTCCTTCTGCTGCGCGTCTTCCGCAGCTTCGCGCTTCTAT
ATCACTCCACTCGTGCTCCTCAACAGCATCCAAATTCATCGCCGCCCGTG
TGCCAAATCGCTCCCGTCTTGCCATTCGCCGCTTCGTCGCCGCCACCCCC
ACCATGGTTGCCGAAGGCCAATCGGCGCCCGATTTCGAACGTACCGACAT
CGACGGCAACAATATCAAGCTGTCAGAGCTCCGTGGAACCAATGTTGTTC
TCTACTTCAGTGCTCTGCAAGGGCCTGGTTGCACTTCTCAATCCTGCACC
TTTCGTGACGCCGCAGAGGATTTCGCAAGCTTAGATGCCAAGATCATTGC
CATCTCAGCGCAGGCAGACAGCAAGAATTCTCAGTTTAAGCGCGCTAACC
GCTTGTCGTTTCCCATAATTTCGGATTCAGACAAACAGTTGCAGAAGATG
TACGGAGTTCCTTCCACCTTTGGACTCATTCCGGGAAGAGTTACCTATGT
CATTGACAAGGAGGGTGTTATTCGAAAGATATTCAATTCCCAGTTTAATG
TTACACAGCACGTTGCTATCGCAAAGGAAACCTTGCAATCACTAGACAAG
TAA
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