Ggra1723.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1723.t1
Unique NameGgra1723.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length367
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:470411..471607 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704865.1
Preferred nameTSG101
PFAMsLdh_1_C,Ldh_1_N,UEV,Vps23_core
Max annot lvl2759|Eukaryota
KEGG koko:K08576,ko:K11974,ko:K12183
KEGG Pathwayko04144,ko04217,ko04621,map04144,map04217,map04621
KEGG ModuleM00409
GOsGO:0000813,GO:0001558,GO:0001932,GO:0001933,GO:0003674,GO:0003676,GO:0003677,GO:0003712,GO:0003713,GO:0003714,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005768,GO:0005769,GO:0005770,GO:0005771,GO:0005829,GO:0005886,GO:0006355,GO:0006464,GO:0006469,GO:0006508,GO:0006511,GO:0006513,GO:0006807,GO:0006810,GO:0006858,GO:0006887,GO:0006914,GO:0006996,GO:0007032,GO:0007034,GO:0007041,GO:0007049,GO:0007050,GO:0007163,GO:0007175,GO:0007176,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0008285,GO:0008333,GO:0008544,GO:0009056,GO:0009057,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009913,GO:0009966,GO:0009968,GO:0009987,GO:0010008,GO:0010256,GO:0010468,GO:0010469,GO:0010556,GO:0010557,GO:0010558,GO:0010563,GO:0010604,GO:0010605,GO:0010629,GO:0010646,GO:0010648,GO:0012505,GO:0016020,GO:0016032,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0016322,GO:0016567,GO:0017157,GO:0019058,GO:0019068,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019899,GO:0019941,GO:0021700,GO:0022008,GO:0022402,GO:0022411,GO:0022607,GO:0023051,GO:0023057,GO:0030011,GO:0030100,GO:0030154,GO:0030163,GO:0030182,GO:0030216,GO:0030374,GO:0030587,GO:0030855,GO:0031090,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031400,GO:0031410,GO:0031625,GO:0031974,GO:0031981,GO:0031982,GO:0032182,GO:0032268,GO:0032269,GO:0032446,GO:0032501,GO:0032502,GO:0032509,GO:0032510,GO:0032801,GO:0032879,GO:0032880,GO:0032940,GO:0032984,GO:0032991,GO:0033043,GO:0033673,GO:0035088,GO:0035090,GO:0036211,GO:0036257,GO:0036258,GO:0036452,GO:0039702,GO:0040008,GO:0040012,GO:0040017,GO:0042058,GO:0042059,GO:0042127,GO:0042325,GO:0042326,GO:0042551,GO:0042802,GO:0042803,GO:0043086,GO:0043112,GO:0043130,GO:0043162,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043230,GO:0043231,GO:0043232,GO:0043233,GO:0043405,GO:0043408,GO:0043412,GO:0043549,GO:0043588,GO:0043632,GO:0043900,GO:0043901,GO:0043902,GO:0043903,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044092,GO:0044126,GO:0044130,GO:0044144,GO:0044146,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044403,GO:0044419,GO:0044421,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045570,GO:0045571,GO:0045786,GO:0045807,GO:0045859,GO:0045892,GO:0045921,GO:0045926,GO:0045934,GO:0045935,GO:0045936,GO:0046620,GO:0046621,GO:0046755,GO:0046790,GO:0046903,GO:0046907,GO:0046983,GO:0048306,GO:0048468,GO:0048469,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048524,GO:0048583,GO:0048585,GO:0048638,GO:0048640,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050730,GO:0050732,GO:0050789,GO:0050790,GO:0050792,GO:0050793,GO:0050794,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051093,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051239,GO:0051241,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051338,GO:0051348,GO:0051603,GO:0051641,GO:0051649,GO:0051703,GO:0051704,GO:0051726,GO:0060255,GO:0060341,GO:0060429,GO:0060627,GO:0061097,GO:0061099,GO:0061245,GO:0061919,GO:0065007,GO:0065009,GO:0070013,GO:0070062,GO:0070201,GO:0070647,GO:0070925,GO:0071695,GO:0071704,GO:0071840,GO:0071900,GO:0071944,GO:0071985,GO:0080090,GO:0090087,GO:0090702,GO:0097159,GO:0097352,GO:0097708,GO:0097734,GO:0098588,GO:0098796,GO:0098805,GO:0099120,GO:0140110,GO:0140112,GO:1901184,GO:1901185,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1902115,GO:1902186,GO:1902188,GO:1902531,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1903530,GO:1903532,GO:1903541,GO:1903543,GO:1903551,GO:1903561,GO:1903772,GO:1903774,GO:1903827,GO:1903829,GO:1903900,GO:1903902,GO:1904951,GO:1990182,GO:2000026,GO:2000112,GO:2000113,GO:2000272,GO:2000395,GO:2000397,GO:2001141
Evalue1.01e-30
EggNOG OGsKOG2391@1|root,KOG2391@2759|Eukaryota
EC2.3.2.31
DescriptionTumor susceptibility
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko04121,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1723Ggra1723Gracilaria gracilis GNS1m malegenetig00000050_pilon 470411..471607 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1723.t1Ggra1723.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 470411..471607 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1723.t1.stop1Ggra1723.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 470411..470413 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1723.t1.CDS1Ggra1723.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 470411..471445 -
Ggra1723.t1.CDS2Ggra1723.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000050_pilon 471542..471607 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1723.t1.exon1Ggra1723.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 470411..471445 -
Ggra1723.t1.exon2Ggra1723.t1.exon2Gracilaria gracilis GNS1m maleexontig00000050_pilon 471542..471607 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1723.t1.intron1Ggra1723.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000050_pilon 471446..471541 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1723.t1.start1Ggra1723.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 471605..471607 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1723.t1 ID=Ggra1723.t1|Name=Ggra1723.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=367bp
MWRPQAPAQPATTTPRQIQSLVREARCYPPERESRIVRDIHDCCRHFRGL
FPKLDNLAIEPNHSMRLVILDGVIPVKYRQVTYQIPVAIWCPPHYPDDAP
IPYVRPTPDMVLRTRHSQVDTEGRVYLRHYLANWDATQYNLYGVVHAMIR
VFSAEPPVHKRPTIPAPASNEPERRRLISILTTRLSERFNDASEEAVIDI
CQLLKQKDDMLRSGQSVTKEMRFRALQLEKIRREMQQKEADKEALLQWQA
VFNKNGEQDMHDMHDNQLHVDDILAYSDVLDEQICTCIAKDGAFSDVLDQ
LDEAFVKGVIDQDAYMKYVRDISRQQFFPRALKKKIEVAKSKKVEVDEHG
VLRRMRSGPTTPLFAS*
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spliced messenger RNA

>Ggra1723.t1 ID=Ggra1723.t1|Name=Ggra1723.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1101bp|location=Sequence derived from alignment at tig00000050_pilon:470411..471607- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGAGACCTCAGGCGCCGGCGCAGCCTGCTACCACTACCCCGCGTCA
GATTCAGAGCTTGGTGCGAGAGGCTAGATGTTATCCCCCGGAGCGAGAGT
CTCGCATTGTAAGAGACATCCATGACTGCTGTCGTCATTTTCGTGGCTTG
TTTCCAAAGTTGGATAACTTAGCAATCGAACCCAACCATTCCATGCGACT
CGTCATTCTCGACGGCGTTATACCCGTTAAGTATCGTCAAGTAACATATC
AGATCCCCGTCGCTATCTGGTGCCCTCCACACTACCCGGACGACGCACCC
ATTCCATATGTCCGTCCCACGCCAGATATGGTGTTGCGTACACGTCATTC
TCAAGTCGATACCGAGGGGAGAGTATACTTGCGACATTATCTTGCGAACT
GGGATGCTACCCAATATAATTTGTACGGTGTTGTCCATGCCATGATTCGC
GTTTTTTCCGCTGAACCTCCCGTGCATAAGAGGCCGACCATTCCAGCACC
GGCCTCGAATGAACCTGAACGGCGTCGCTTGATTTCCATTCTCACCACAC
GCCTTTCGGAACGCTTCAACGACGCGAGTGAAGAGGCCGTCATTGATATT
TGTCAACTTCTCAAGCAAAAAGACGATATGCTAAGGTCCGGACAATCCGT
CACCAAGGAAATGAGATTCAGGGCATTGCAGCTGGAGAAAATTCGTCGCG
AGATGCAACAGAAAGAAGCCGACAAGGAAGCGTTGTTACAGTGGCAAGCC
GTGTTTAACAAGAATGGCGAGCAAGACATGCACGACATGCACGACAACCA
GCTTCATGTGGATGATATCCTGGCGTATTCCGACGTACTGGATGAACAGA
TTTGTACGTGCATTGCGAAGGACGGCGCGTTTTCGGATGTTCTCGATCAG
CTGGATGAAGCGTTTGTTAAAGGTGTGATTGATCAAGACGCATACATGAA
ATACGTACGAGACATAAGCCGGCAACAATTTTTCCCGCGGGCGTTGAAGA
AGAAAATAGAGGTTGCGAAGTCTAAGAAGGTCGAGGTGGATGAACACGGT
GTTCTTCGTCGCATGAGGTCTGGCCCTACTACACCTCTGTTTGCGTCGTA
G
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protein sequence of Ggra1723.t1

>Ggra1723.t1 ID=Ggra1723.t1|Name=Ggra1723.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=367bp
MWRPQAPAQPATTTPRQIQSLVREARCYPPERESRIVRDIHDCCRHFRGL
FPKLDNLAIEPNHSMRLVILDGVIPVKYRQVTYQIPVAIWCPPHYPDDAP
IPYVRPTPDMVLRTRHSQVDTEGRVYLRHYLANWDATQYNLYGVVHAMIR
VFSAEPPVHKRPTIPAPASNEPERRRLISILTTRLSERFNDASEEAVIDI
CQLLKQKDDMLRSGQSVTKEMRFRALQLEKIRREMQQKEADKEALLQWQA
VFNKNGEQDMHDMHDNQLHVDDILAYSDVLDEQICTCIAKDGAFSDVLDQ
LDEAFVKGVIDQDAYMKYVRDISRQQFFPRALKKKIEVAKSKKVEVDEHG
VLRRMRSGPTTPLFAS*
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mRNA from alignment at tig00000050_pilon:470411..471607-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1723.t1 ID=Ggra1723.t1|Name=Ggra1723.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1197bp|location=Sequence derived from alignment at tig00000050_pilon:470411..471607- (Gracilaria gracilis GNS1m male)
ATGTGGAGACCTCAGGCGCCGGCGCAGCCTGCTACCACTACCCCGCGTCA
GATTCAGAGCTTGGTGGTAAGTTCCTTCCCCATCCTTCCTCTATTCGCCC
TCGTCGGCGCGTTGCTTCTTCGCATATTCTGACCTTCGTGCGCATCTAAA
CCCTGTGAGTAGCGAGAGGCTAGATGTTATCCCCCGGAGCGAGAGTCTCG
CATTGTAAGAGACATCCATGACTGCTGTCGTCATTTTCGTGGCTTGTTTC
CAAAGTTGGATAACTTAGCAATCGAACCCAACCATTCCATGCGACTCGTC
ATTCTCGACGGCGTTATACCCGTTAAGTATCGTCAAGTAACATATCAGAT
CCCCGTCGCTATCTGGTGCCCTCCACACTACCCGGACGACGCACCCATTC
CATATGTCCGTCCCACGCCAGATATGGTGTTGCGTACACGTCATTCTCAA
GTCGATACCGAGGGGAGAGTATACTTGCGACATTATCTTGCGAACTGGGA
TGCTACCCAATATAATTTGTACGGTGTTGTCCATGCCATGATTCGCGTTT
TTTCCGCTGAACCTCCCGTGCATAAGAGGCCGACCATTCCAGCACCGGCC
TCGAATGAACCTGAACGGCGTCGCTTGATTTCCATTCTCACCACACGCCT
TTCGGAACGCTTCAACGACGCGAGTGAAGAGGCCGTCATTGATATTTGTC
AACTTCTCAAGCAAAAAGACGATATGCTAAGGTCCGGACAATCCGTCACC
AAGGAAATGAGATTCAGGGCATTGCAGCTGGAGAAAATTCGTCGCGAGAT
GCAACAGAAAGAAGCCGACAAGGAAGCGTTGTTACAGTGGCAAGCCGTGT
TTAACAAGAATGGCGAGCAAGACATGCACGACATGCACGACAACCAGCTT
CATGTGGATGATATCCTGGCGTATTCCGACGTACTGGATGAACAGATTTG
TACGTGCATTGCGAAGGACGGCGCGTTTTCGGATGTTCTCGATCAGCTGG
ATGAAGCGTTTGTTAAAGGTGTGATTGATCAAGACGCATACATGAAATAC
GTACGAGACATAAGCCGGCAACAATTTTTCCCGCGGGCGTTGAAGAAGAA
AATAGAGGTTGCGAAGTCTAAGAAGGTCGAGGTGGATGAACACGGTGTTC
TTCGTCGCATGAGGTCTGGCCCTACTACACCTCTGTTTGCGTCGTAG
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Coding sequence (CDS) from alignment at tig00000050_pilon:470411..471607-

>Ggra1723.t1 ID=Ggra1723.t1|Name=Ggra1723.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1101bp|location=Sequence derived from alignment at tig00000050_pilon:470411..471607- (Gracilaria gracilis GNS1m male)
ATGTGGAGACCTCAGGCGCCGGCGCAGCCTGCTACCACTACCCCGCGTCA
GATTCAGAGCTTGGTGCGAGAGGCTAGATGTTATCCCCCGGAGCGAGAGT
CTCGCATTGTAAGAGACATCCATGACTGCTGTCGTCATTTTCGTGGCTTG
TTTCCAAAGTTGGATAACTTAGCAATCGAACCCAACCATTCCATGCGACT
CGTCATTCTCGACGGCGTTATACCCGTTAAGTATCGTCAAGTAACATATC
AGATCCCCGTCGCTATCTGGTGCCCTCCACACTACCCGGACGACGCACCC
ATTCCATATGTCCGTCCCACGCCAGATATGGTGTTGCGTACACGTCATTC
TCAAGTCGATACCGAGGGGAGAGTATACTTGCGACATTATCTTGCGAACT
GGGATGCTACCCAATATAATTTGTACGGTGTTGTCCATGCCATGATTCGC
GTTTTTTCCGCTGAACCTCCCGTGCATAAGAGGCCGACCATTCCAGCACC
GGCCTCGAATGAACCTGAACGGCGTCGCTTGATTTCCATTCTCACCACAC
GCCTTTCGGAACGCTTCAACGACGCGAGTGAAGAGGCCGTCATTGATATT
TGTCAACTTCTCAAGCAAAAAGACGATATGCTAAGGTCCGGACAATCCGT
CACCAAGGAAATGAGATTCAGGGCATTGCAGCTGGAGAAAATTCGTCGCG
AGATGCAACAGAAAGAAGCCGACAAGGAAGCGTTGTTACAGTGGCAAGCC
GTGTTTAACAAGAATGGCGAGCAAGACATGCACGACATGCACGACAACCA
GCTTCATGTGGATGATATCCTGGCGTATTCCGACGTACTGGATGAACAGA
TTTGTACGTGCATTGCGAAGGACGGCGCGTTTTCGGATGTTCTCGATCAG
CTGGATGAAGCGTTTGTTAAAGGTGTGATTGATCAAGACGCATACATGAA
ATACGTACGAGACATAAGCCGGCAACAATTTTTCCCGCGGGCGTTGAAGA
AGAAAATAGAGGTTGCGAAGTCTAAGAAGGTCGAGGTGGATGAACACGGT
GTTCTTCGTCGCATGAGGTCTGGCCCTACTACACCTCTGTTTGCGTCGTA
G
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